Wall clock time and date at job start Tue Mar 31 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46829 * 2 1 4 4 C 1.50701 * 109.46658 * 180.02562 * 3 2 1 5 5 O 1.21280 * 120.00060 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99460 * 180.02562 * 4 3 2 7 7 C 1.47426 * 125.65129 * 359.95113 * 6 4 3 8 8 C 1.54907 * 104.83497 * 204.16364 * 7 6 4 9 9 C 1.55160 * 101.58283 * 322.99712 * 8 7 6 10 10 C 1.47025 * 125.64825 * 179.97438 * 6 4 3 11 11 H 1.09000 * 109.88035 * 298.47807 * 10 6 4 12 12 C 1.50700 * 109.88003 * 59.48506 * 10 6 4 13 13 O 1.21283 * 120.00275 * 0.02562 * 12 10 6 14 14 N 1.34777 * 120.00075 * 179.97438 * 12 10 6 15 15 C 1.46499 * 120.00065 * 180.02562 * 14 12 10 16 16 C 1.53004 * 109.47198 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47211 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99694 * 180.27574 * 17 16 15 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 16 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 16 22 22 H 1.48504 * 109.47209 * 89.99886 * 21 19 17 23 23 H 1.48501 * 109.47358 * 209.99377 * 21 19 17 24 24 H 1.48496 * 109.47341 * 329.99989 * 21 19 17 25 25 H 1.09000 * 109.47509 * 60.00205 * 1 2 3 26 26 H 1.09006 * 109.46940 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47348 * 299.99806 * 1 2 3 28 28 H 1.08999 * 109.47055 * 240.00164 * 2 1 3 29 29 H 1.08996 * 109.46820 * 119.99926 * 2 1 3 30 30 H 1.08999 * 109.47168 * 60.00234 * 3 2 1 31 31 H 1.09000 * 109.46908 * 300.00163 * 3 2 1 32 32 H 1.08991 * 110.36971 * 323.00853 * 7 6 4 33 33 H 1.09003 * 110.36319 * 85.33014 * 7 6 4 34 34 H 1.09001 * 111.00024 * 81.06760 * 8 7 6 35 35 H 1.08994 * 111.00916 * 204.87688 * 8 7 6 36 36 H 1.09002 * 110.71593 * 277.13406 * 9 8 7 37 37 H 1.09004 * 110.71930 * 153.86060 * 9 8 7 38 38 H 0.97000 * 120.00140 * 0.02562 * 14 12 10 39 39 H 1.09000 * 109.47602 * 60.00059 * 15 14 12 40 40 H 1.09007 * 109.47337 * 299.99774 * 15 14 12 41 41 H 1.09000 * 109.47211 * 59.99311 * 16 15 14 42 42 H 1.09007 * 109.46376 * 299.99853 * 16 15 14 43 43 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1533 0.3922 -0.0006 6 7 4.2208 2.6097 -0.0002 7 6 3.6129 3.9528 -0.0002 8 6 4.6942 4.8776 -0.6127 9 6 5.9948 4.2658 -0.0282 10 6 5.6839 2.7545 -0.0002 11 1 6.1009 2.3043 0.9006 12 6 6.2647 2.0894 -1.2214 13 8 5.5333 1.5445 -2.0208 14 7 7.5968 2.1009 -1.4257 15 6 8.1614 1.4547 -2.6132 16 6 9.6834 1.6108 -2.6037 17 6 10.2641 0.9467 -3.8255 18 1 9.6127 0.4614 -4.5373 19 6 11.6273 0.9532 -4.0313 20 7 12.4205 1.5439 -3.1644 21 14 12.3478 0.1232 -5.5418 22 1 12.4252 1.1028 -6.6553 23 1 13.7099 -0.3787 -5.2286 24 1 11.4811 -1.0141 -5.9425 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 2.7131 3.9620 -0.6153 33 1 3.3803 4.2639 1.0183 34 1 4.6889 4.8174 -1.7010 35 1 4.5620 5.9071 -0.2799 36 1 6.1783 4.6402 0.9790 37 1 6.8446 4.4730 -0.6786 38 1 8.1818 2.5370 -0.7866 39 1 7.7535 1.9218 -3.5096 40 1 7.9051 0.3952 -2.6068 41 1 10.0910 1.1435 -1.7073 42 1 9.9399 2.6703 -2.6099 43 1 13.3796 1.5481 -3.3090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342635941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:22 Heat of formation + Delta-G solvation = -92.070959 kcal Electronic energy + Delta-G solvation = -22447.670305 eV Core-core repulsion = 19106.010599 eV Total energy + Delta-G solvation = -3341.659706 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.61258 -38.64054 -37.18260 -34.78419 -34.43236 -32.87141 -31.83181 -30.37301 -29.01072 -27.84249 -24.94482 -23.88737 -22.04889 -21.95648 -20.93336 -20.05211 -19.00795 -17.33146 -17.17456 -16.41790 -15.82892 -15.72373 -15.17180 -14.69531 -14.56524 -14.38188 -14.04424 -13.69030 -13.44609 -13.30080 -12.96647 -12.81322 -12.65566 -12.27380 -12.07388 -11.86101 -11.59075 -11.47162 -11.25517 -11.22989 -11.15918 -10.99679 -10.86814 -10.62019 -10.28327 -9.77678 -9.72293 -9.49641 -9.24843 -8.56901 -8.49365 -8.29771 -6.07613 -4.10116 2.67824 2.89572 3.07102 3.30787 3.36767 3.41626 3.77464 4.24674 4.29260 4.43754 4.67310 4.68482 4.74424 4.86457 5.01864 5.04410 5.17301 5.28334 5.29448 5.34304 5.40150 5.44354 5.50644 5.55986 5.59411 5.69839 5.85628 5.90143 6.01743 6.11742 6.22294 6.39486 6.41712 6.78710 6.98982 7.48261 7.54602 7.64745 7.91058 8.06790 8.27245 8.32067 8.74917 8.95978 9.54586 11.04059 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.003340 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.019772 B = 8382.374227 C = 9226.757811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.131 4.131 4 C 0.532 3.468 5 O -0.520 6.520 6 N -0.607 5.607 7 C 0.102 3.898 8 C -0.134 4.134 9 C -0.125 4.125 10 C 0.116 3.884 11 H 0.098 0.902 12 C 0.500 3.500 13 O -0.530 6.530 14 N -0.723 5.723 15 C 0.124 3.876 16 C 0.014 3.986 17 C -0.521 4.521 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.396 0.604 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.686 8.455 10.811 24.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.171 4.171 4 C 0.321 3.679 5 O -0.395 6.395 6 N -0.343 5.343 7 C -0.021 4.021 8 C -0.172 4.172 9 C -0.163 4.163 10 C 0.009 3.991 11 H 0.116 0.884 12 C 0.283 3.717 13 O -0.406 6.406 14 N -0.374 5.374 15 C 0.002 3.998 16 C -0.024 4.024 17 C -0.559 4.559 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.229 0.771 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.041 0.959 42 H 0.040 0.960 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.761 7.399 10.249 24.307 hybrid contribution 0.905 -0.119 -0.514 1.048 sum -19.856 7.280 9.735 23.282 Atomic orbital electron populations 1.21786 0.95562 1.01903 1.01589 1.21297 0.95075 0.94762 1.03781 1.21657 0.91469 1.00096 1.03873 1.20347 0.89891 0.82085 0.75569 1.90735 1.70210 1.30405 1.48105 1.48270 1.05167 1.06102 1.74730 1.22331 0.97069 0.81927 1.00793 1.22803 0.93807 0.98978 1.01570 1.22693 0.99242 0.91379 1.03007 1.21522 0.82641 0.97102 0.97853 0.88417 1.20639 0.82982 0.80666 0.87414 1.90670 1.59488 1.44168 1.46281 1.46260 1.06376 1.57697 1.27092 1.21683 0.96785 0.96317 0.84998 1.19317 0.87223 0.97784 0.98061 1.21063 0.92021 1.35697 1.07146 0.92295 1.24991 0.97142 0.95416 0.96739 1.69953 1.04010 1.43760 1.35671 0.86514 0.78379 0.79831 0.82855 1.20572 1.21153 1.19718 0.92713 0.92426 0.92837 0.90991 0.91299 0.89315 0.89105 0.90457 0.91067 0.90219 0.89343 0.89394 0.89018 0.77105 0.92780 0.92709 0.95940 0.95989 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.11 -1.18 5.22 -26.73 -0.14 -1.32 16 3 C -0.13 -1.33 4.71 -27.88 -0.13 -1.46 16 4 C 0.53 7.89 6.99 -10.99 -0.08 7.81 16 5 O -0.52 -10.25 15.06 -11.31 -0.17 -10.42 16 6 N -0.61 -7.76 2.87 -164.32 -0.47 -8.23 16 7 C 0.10 0.82 6.69 -2.53 -0.02 0.81 16 8 C -0.13 -1.06 7.09 -24.58 -0.17 -1.23 16 9 C -0.12 -1.15 6.45 -24.90 -0.16 -1.31 16 10 C 0.12 1.55 3.30 -68.11 -0.22 1.33 16 11 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 12 C 0.50 9.16 6.70 -10.98 -0.07 9.08 16 13 O -0.53 -11.99 14.86 -11.31 -0.17 -12.15 16 14 N -0.72 -13.26 5.24 -60.29 -0.32 -13.58 16 15 C 0.12 2.79 5.61 -4.04 -0.02 2.77 16 16 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 17 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 18 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 21 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 28 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 29 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.81 7.85 -51.93 -0.41 0.41 16 32 H 0.08 0.54 7.48 -51.93 -0.39 0.15 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.90 7.48 -51.93 -0.39 0.51 16 38 H 0.40 6.15 8.35 -40.82 -0.34 5.81 16 39 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -36.34 353.75 -8.69 -45.03 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.40 Total: 0.64 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.20 Total: 2.37 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: -0.05 Total: -47.52 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.34 Total: -22.58 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.34 -8.69 -45.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342635941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.045 kcal (2) G-P(sol) polarization free energy of solvation -36.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds