Wall clock time and date at job start Tue Mar 31 2020 06:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46634 * 2 1 4 4 N 1.46499 * 109.46874 * 179.97438 * 3 2 1 5 5 C 1.37107 * 119.99525 * 96.57448 * 4 3 2 6 6 H 1.08003 * 119.99688 * 220.13893 * 5 4 3 7 7 C 1.38948 * 120.00037 * 40.14237 * 5 4 3 8 8 N 1.31413 * 119.99787 * 202.20741 * 7 5 4 9 9 Si 1.86798 * 120.00060 * 22.21129 * 7 5 4 10 10 H 1.48501 * 109.46789 * 269.30191 * 9 7 5 11 11 H 1.48494 * 109.47313 * 29.29923 * 9 7 5 12 12 H 1.48492 * 109.47319 * 149.30515 * 9 7 5 13 13 C 1.34780 * 120.00397 * 276.57373 * 4 3 2 14 14 O 1.21288 * 119.99981 * 356.00212 * 13 4 3 15 15 C 1.50696 * 119.99912 * 176.00560 * 13 4 3 16 16 H 1.09005 * 109.47434 * 39.80932 * 15 13 4 17 17 C 1.53005 * 109.47206 * 279.81114 * 15 13 4 18 18 C 1.52998 * 109.46926 * 180.02562 * 17 15 13 19 19 C 1.52991 * 109.47483 * 60.00147 * 18 17 15 20 20 C 1.53005 * 109.46920 * 299.99857 * 19 18 17 21 21 H 1.08998 * 109.47073 * 180.02562 * 20 19 18 22 22 C 1.50706 * 109.46638 * 299.99812 * 20 19 18 23 23 N 1.34773 * 120.00483 * 299.99818 * 22 20 19 24 24 O 1.21288 * 119.99716 * 120.00360 * 22 20 19 25 25 C 1.52991 * 109.47368 * 59.99824 * 20 19 18 26 26 H 1.09000 * 109.47546 * 299.99292 * 1 2 3 27 27 H 1.09001 * 109.47495 * 60.00052 * 1 2 3 28 28 H 1.09003 * 109.46929 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46819 * 240.00177 * 2 1 3 30 30 H 1.09001 * 109.47495 * 119.99948 * 2 1 3 31 31 H 1.09005 * 109.47207 * 60.00421 * 3 2 1 32 32 H 1.08994 * 109.47474 * 299.99986 * 3 2 1 33 33 H 0.96998 * 119.99509 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46462 * 300.00218 * 17 15 13 35 35 H 1.08998 * 109.47073 * 59.99674 * 17 15 13 36 36 H 1.09006 * 109.46763 * 179.97438 * 18 17 15 37 37 H 1.08997 * 109.47473 * 299.99286 * 18 17 15 38 38 H 1.08998 * 109.47933 * 59.99398 * 19 18 17 39 39 H 1.09000 * 109.47386 * 179.97438 * 19 18 17 40 40 H 0.97005 * 119.99590 * 0.02562 * 23 22 20 41 41 H 0.96997 * 120.00441 * 179.97438 * 23 22 20 42 42 H 1.09006 * 109.47205 * 180.02562 * 25 20 19 43 43 H 1.09005 * 109.47115 * 60.00278 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5048 1.4426 0.0006 5 6 4.1908 1.5784 -1.1787 6 1 5.0801 0.9920 -1.3568 7 6 3.7418 2.4705 -2.1448 8 7 4.0947 2.3114 -3.4007 9 14 2.6367 3.8958 -1.6585 10 1 1.2155 3.4777 -1.7613 11 1 2.9344 4.2983 -0.2605 12 1 2.8816 5.0445 -2.5671 13 6 4.1783 1.3092 1.1604 14 8 3.5737 1.2620 2.2108 15 6 5.6826 1.2188 1.1521 16 1 6.0844 1.9145 0.4155 17 6 6.1059 -0.2066 0.7913 18 6 7.6331 -0.2985 0.7835 19 6 8.1726 0.0581 2.1700 20 6 7.7493 1.4835 2.5308 21 1 8.1340 1.7378 3.5184 22 6 8.3053 2.4455 1.5127 23 7 9.6374 2.5379 1.3298 24 8 7.5540 3.1366 0.8578 25 6 6.2222 1.5755 2.5387 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6765 1.9564 0.8901 32 1 1.6765 1.9564 -0.8899 33 1 3.7815 2.9344 -4.0750 34 1 5.7040 -0.9023 1.5279 35 1 5.7211 -0.4609 -0.1963 36 1 7.9346 -1.3141 0.5269 37 1 8.0352 0.3972 0.0471 38 1 7.7705 -0.6376 2.9065 39 1 9.2606 -0.0078 2.1646 40 1 10.2383 1.9849 1.8534 41 1 9.9952 3.1567 0.6743 42 1 5.9206 2.5911 2.7953 43 1 5.8200 0.8797 3.2751 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344815502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:24 Heat of formation + Delta-G solvation = -92.826687 kcal Electronic energy + Delta-G solvation = -24105.034949 eV Core-core repulsion = 20763.342472 eV Total energy + Delta-G solvation = -3341.692477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31887 -38.67603 -36.48348 -35.05554 -33.61283 -32.90033 -31.54493 -30.58213 -30.28243 -25.96113 -24.74516 -23.61138 -22.50527 -21.19864 -20.89808 -19.12791 -18.72094 -17.10813 -16.95606 -16.06052 -15.97742 -15.23336 -14.97427 -14.40322 -14.20705 -14.06196 -13.67165 -13.58714 -13.28760 -12.92374 -12.57112 -12.38546 -12.09258 -11.82651 -11.75129 -11.58277 -11.48709 -11.24665 -10.93487 -10.78112 -10.67365 -10.43536 -10.32427 -10.11635 -9.93031 -9.69575 -9.65294 -9.48785 -9.14830 -9.00073 -8.29135 -7.59406 -6.36511 -3.94504 2.92344 3.14931 3.31270 3.43923 3.71357 3.89482 4.25780 4.50421 4.90100 4.93422 4.99489 5.11374 5.29868 5.61814 5.63437 5.66609 5.69744 5.72464 5.83133 5.89166 5.92840 6.01080 6.15407 6.16630 6.29801 6.40478 6.45130 6.47183 6.50947 6.53798 6.63449 6.67164 6.85098 6.89760 6.95334 6.99139 7.25035 7.49908 7.54176 8.23203 8.40100 8.54278 9.10934 9.51400 9.85982 10.74551 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.006786 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.318801 B = 4124.949171 C = 4872.029707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C 0.101 3.899 4 N -0.466 5.466 5 C -0.337 4.337 6 H 0.105 0.895 7 C 0.070 3.930 8 N -0.862 5.862 9 Si 0.870 3.130 10 H -0.275 1.275 11 H -0.262 1.262 12 H -0.289 1.289 13 C 0.490 3.510 14 O -0.604 6.604 15 C -0.102 4.102 16 H 0.126 0.874 17 C -0.105 4.105 18 C -0.119 4.119 19 C -0.108 4.108 20 C -0.108 4.108 21 H 0.093 0.907 22 C 0.516 3.484 23 N -0.863 5.863 24 O -0.517 6.517 25 C -0.079 4.079 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.273 0.727 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.396 0.604 41 H 0.397 0.603 42 H 0.066 0.934 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.688 -4.136 8.494 12.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C -0.022 4.022 4 N -0.186 5.186 5 C -0.464 4.464 6 H 0.123 0.877 7 C -0.137 4.137 8 N -0.498 5.498 9 Si 0.697 3.303 10 H -0.202 1.202 11 H -0.186 1.186 12 H -0.215 1.215 13 C 0.280 3.720 14 O -0.490 6.490 15 C -0.123 4.123 16 H 0.144 0.856 17 C -0.143 4.143 18 C -0.157 4.157 19 C -0.145 4.145 20 C -0.130 4.130 21 H 0.111 0.889 22 C 0.300 3.700 23 N -0.427 5.427 24 O -0.391 6.391 25 C -0.117 4.117 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.224 0.776 41 H 0.228 0.772 42 H 0.084 0.916 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.711 -3.712 8.445 12.023 hybrid contribution -0.018 0.841 -0.115 0.849 sum 7.693 -2.871 8.330 11.697 Atomic orbital electron populations 1.21702 0.96481 1.00912 1.01346 1.21761 0.94719 0.98173 1.02238 1.21655 0.83012 0.96461 1.01094 1.43762 1.03693 1.64633 1.06518 1.19052 1.12304 1.23554 0.91443 0.87742 1.25323 0.96665 0.97026 0.94680 1.69770 1.44246 1.35720 1.00022 0.87069 0.80262 0.83023 0.79905 1.20165 1.18575 1.21527 1.20488 0.89547 0.78928 0.83021 1.90492 1.70775 1.56153 1.31556 1.21274 0.93225 0.98877 0.98919 0.85610 1.21421 0.94514 0.95960 1.02423 1.21557 0.96640 1.01234 0.96231 1.21539 0.99789 0.94644 0.98565 1.21416 0.98708 0.94870 0.97958 0.88907 1.20750 0.82146 0.83236 0.83830 1.43934 1.07710 1.46202 1.44870 1.90798 1.57341 1.43925 1.47020 1.21151 0.90411 1.02505 0.97666 0.93098 0.93021 0.93144 0.91474 0.92149 0.92090 0.91213 0.91718 0.92594 0.90632 0.91891 0.91844 0.90780 0.92080 0.77630 0.77227 0.91566 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.91 37.16 0.37 -2.06 16 2 C -0.13 -2.64 6.21 -26.73 -0.17 -2.81 16 3 C 0.10 2.38 3.96 -4.04 -0.02 2.36 16 4 N -0.47 -11.85 2.14 -114.81 -0.25 -12.09 16 5 C -0.34 -9.13 8.49 -14.93 -0.13 -9.26 16 6 H 0.11 2.94 6.04 -52.48 -0.32 2.62 16 7 C 0.07 1.94 5.24 -17.47 -0.09 1.85 16 8 N -0.86 -24.64 13.96 55.50 0.77 -23.87 16 9 Si 0.87 21.92 25.35 -169.99 -4.31 17.61 16 10 H -0.27 -6.56 6.51 56.52 0.37 -6.19 16 11 H -0.26 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 C 0.49 12.05 6.74 -10.99 -0.07 11.98 16 14 O -0.60 -15.69 15.70 5.55 0.09 -15.61 16 15 C -0.10 -2.14 1.42 -91.77 -0.13 -2.27 16 16 H 0.13 3.00 4.60 -51.93 -0.24 2.76 16 17 C -0.11 -1.89 5.02 -26.73 -0.13 -2.02 16 18 C -0.12 -1.68 5.70 -26.74 -0.15 -1.83 16 19 C -0.11 -1.21 5.36 -26.73 -0.14 -1.35 16 20 C -0.11 -1.43 3.01 -91.77 -0.28 -1.71 16 21 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 22 C 0.52 7.69 5.91 -10.98 -0.06 7.62 16 23 N -0.86 -8.63 8.77 31.22 0.27 -8.36 16 24 O -0.52 -10.64 14.49 5.55 0.08 -10.56 16 25 C -0.08 -1.41 3.84 -26.74 -0.10 -1.51 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.44 7.57 -51.93 -0.39 1.05 16 32 H 0.07 1.68 3.86 -51.93 -0.20 1.48 16 33 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.51 6.64 -51.93 -0.35 1.16 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.98 7.22 -51.93 -0.37 0.61 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.50 7.57 -51.93 -0.39 0.11 16 40 H 0.40 2.55 8.25 -40.82 -0.34 2.21 16 41 H 0.40 3.75 8.93 -40.82 -0.36 3.38 16 42 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 43 H 0.07 1.27 7.90 -51.93 -0.41 0.86 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -33.34 330.18 -6.24 -39.58 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.77 Total: 9.34 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -1.11 Total: -1.03 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.80 Total: -44.32 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: 0.17 Total: -26.16 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.31 Total: 17.61 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.34 -6.24 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344815502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.249 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds