Wall clock time and date at job start Tue Mar 31 2020 06:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47033 * 2 1 4 4 N 1.46498 * 109.46866 * 180.02562 * 3 2 1 5 5 C 1.37098 * 120.00224 * 90.23079 * 4 3 2 6 6 H 1.07995 * 120.00098 * 165.22341 * 5 4 3 7 7 C 1.38944 * 119.99867 * 345.22199 * 5 4 3 8 8 N 1.31414 * 120.00429 * 357.22205 * 7 5 4 9 9 Si 1.86805 * 120.00013 * 177.22308 * 7 5 4 10 10 H 1.48498 * 109.46819 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47233 * 120.00218 * 9 7 5 12 12 H 1.48504 * 109.46868 * 240.00184 * 9 7 5 13 13 C 1.34777 * 119.99603 * 270.23055 * 4 3 2 14 14 O 1.21287 * 120.00563 * 2.69620 * 13 4 3 15 15 C 1.50706 * 119.99871 * 182.69822 * 13 4 3 16 16 H 1.09003 * 109.47186 * 329.09694 * 15 13 4 17 17 C 1.53006 * 109.46952 * 89.09448 * 15 13 4 18 18 C 1.53004 * 109.46820 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.47237 * 300.00007 * 18 17 15 20 20 C 1.52999 * 109.46937 * 60.00242 * 19 18 17 21 21 H 1.09003 * 109.47119 * 59.99965 * 20 19 18 22 22 C 1.50702 * 109.47030 * 179.97438 * 20 19 18 23 23 N 1.34773 * 120.00046 * 299.99775 * 22 20 19 24 24 O 1.21279 * 119.99775 * 120.00284 * 22 20 19 25 25 C 1.52998 * 109.47154 * 209.09485 * 15 13 4 26 26 H 1.09000 * 109.47096 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47603 * 59.99542 * 1 2 3 28 28 H 1.08999 * 109.46394 * 299.99636 * 1 2 3 29 29 H 1.08992 * 109.47603 * 120.00457 * 2 1 3 30 30 H 1.09009 * 109.46478 * 240.00310 * 2 1 3 31 31 H 1.08997 * 109.46641 * 300.00393 * 3 2 1 32 32 H 1.08998 * 109.46873 * 60.00479 * 3 2 1 33 33 H 0.97001 * 120.00512 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46917 * 300.00075 * 17 15 13 35 35 H 1.09003 * 109.46974 * 60.00116 * 17 15 13 36 36 H 1.09001 * 109.46570 * 179.97438 * 18 17 15 37 37 H 1.09004 * 109.46725 * 60.00179 * 18 17 15 38 38 H 1.08993 * 109.47336 * 300.00252 * 19 18 17 39 39 H 1.09000 * 109.46810 * 180.02562 * 19 18 17 40 40 H 0.96996 * 119.99930 * 0.02562 * 23 22 20 41 41 H 0.96994 * 120.00225 * 179.97438 * 23 22 20 42 42 H 1.08993 * 109.47336 * 300.00141 * 25 15 13 43 43 H 1.09001 * 109.46887 * 59.99950 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.4475 -1.1882 6 1 5.2432 1.6860 -1.2031 7 6 3.5293 1.1455 -2.3726 8 7 2.2611 0.8020 -2.3484 9 14 4.4438 1.2278 -3.9994 10 1 5.8507 1.6360 -3.7563 11 1 4.4214 -0.1079 -4.6480 12 1 3.7862 2.2202 -4.8871 13 6 4.1793 1.4376 1.1663 14 8 3.5744 1.3839 2.2162 15 6 5.6851 1.4990 1.1668 16 1 6.0689 1.0111 0.2708 17 6 6.1359 2.9611 1.1841 18 6 7.6647 3.0233 1.1852 19 6 8.2034 2.3088 2.4261 20 6 7.7526 0.8468 2.4088 21 1 8.1368 0.3588 1.5130 22 6 8.2837 0.1428 3.6308 23 7 9.6127 0.0712 3.8429 24 8 7.5152 -0.3594 4.4233 25 6 6.2244 0.7843 2.4074 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 -0.8898 28 1 -0.3632 0.5138 0.8900 29 1 1.8934 -0.5138 0.8898 30 1 1.8933 -0.5138 -0.8901 31 1 1.6766 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.7999 0.5908 -3.1752 34 1 5.7517 3.4702 0.3002 35 1 5.7521 3.4490 2.0801 36 1 7.9858 4.0649 1.1970 37 1 8.0488 2.5353 0.2894 38 1 7.8193 2.7968 3.3218 39 1 9.2925 2.3536 2.4271 40 1 10.2273 0.4731 3.2093 41 1 9.9546 -0.3816 4.6297 42 1 5.8406 1.2722 3.3033 43 1 5.9032 -0.2572 2.3950 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344815503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:27 Heat of formation + Delta-G solvation = -91.479016 kcal Electronic energy + Delta-G solvation = -23538.265452 eV Core-core repulsion = 20196.631415 eV Total energy + Delta-G solvation = -3341.634037 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.05745 -38.74302 -36.80512 -35.06445 -33.67799 -32.20140 -31.44734 -30.60192 -30.31896 -25.83357 -24.59239 -23.72316 -22.46951 -20.82943 -20.14518 -19.41116 -18.96476 -17.60614 -16.89801 -16.11269 -16.01685 -15.07506 -14.55046 -14.36364 -14.15853 -14.03581 -13.66279 -13.52727 -13.24595 -12.93018 -12.49157 -12.25339 -12.00864 -11.89196 -11.41274 -11.27969 -11.09673 -10.97359 -10.79626 -10.61579 -10.47610 -10.43795 -10.22130 -10.18673 -10.04136 -9.83047 -9.68240 -9.60421 -9.53753 -8.69677 -8.18364 -7.61711 -6.20512 -3.88471 2.73769 3.08916 3.18903 3.21250 3.54951 3.96559 4.07460 4.69481 4.80096 4.92215 5.08420 5.10353 5.39513 5.46342 5.60233 5.68112 5.75523 5.87545 5.92374 6.11056 6.23205 6.24799 6.28707 6.31955 6.47737 6.54561 6.56088 6.60771 6.74899 6.83230 6.85109 6.98385 7.04808 7.17194 7.23779 7.32484 7.36432 7.62712 7.86567 7.97879 8.32734 8.53352 9.11816 9.62463 10.02531 10.67727 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017409 B = 0.005479 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.971537 B = 5109.542357 C = 6017.251246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 C 0.143 3.857 4 N -0.445 5.445 5 C -0.322 4.322 6 H 0.099 0.901 7 C 0.028 3.972 8 N -0.866 5.866 9 Si 0.923 3.077 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.460 3.540 14 O -0.606 6.606 15 C -0.092 4.092 16 H 0.090 0.910 17 C -0.107 4.107 18 C -0.114 4.114 19 C -0.107 4.107 20 C -0.108 4.108 21 H 0.097 0.903 22 C 0.520 3.480 23 N -0.861 5.861 24 O -0.537 6.537 25 C -0.077 4.077 26 H 0.035 0.965 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.024 0.976 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.029 0.971 33 H 0.264 0.736 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.399 0.601 41 H 0.397 0.603 42 H 0.076 0.924 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.402 2.265 2.325 12.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C 0.020 3.980 4 N -0.162 5.162 5 C -0.450 4.450 6 H 0.117 0.883 7 C -0.174 4.174 8 N -0.506 5.506 9 Si 0.750 3.250 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 C 0.248 3.752 14 O -0.493 6.493 15 C -0.113 4.113 16 H 0.108 0.892 17 C -0.145 4.145 18 C -0.152 4.152 19 C -0.145 4.145 20 C -0.129 4.129 21 H 0.115 0.885 22 C 0.305 3.695 23 N -0.425 5.425 24 O -0.412 6.412 25 C -0.115 4.115 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.227 0.773 41 H 0.227 0.773 42 H 0.094 0.906 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.267 1.932 3.053 11.832 hybrid contribution 0.905 -0.096 -0.994 1.347 sum 12.171 1.836 2.060 12.480 Atomic orbital electron populations 1.21564 0.97901 0.99447 1.00234 1.21892 0.93527 0.98637 1.01398 1.21336 0.79805 0.96894 0.99982 1.43841 1.05750 1.62054 1.04577 1.19775 0.95248 1.46117 0.83834 0.88319 1.25285 0.96091 0.96454 0.99606 1.70183 1.08969 1.44409 1.27034 0.85923 0.79324 0.77879 0.81869 1.19508 1.20815 1.20782 1.19998 0.88894 0.82415 0.83851 1.90529 1.70195 1.56875 1.31688 1.21070 0.94543 0.96650 0.99046 0.89213 1.21427 0.94465 0.95928 1.02642 1.21521 0.96334 0.99974 0.97343 1.21520 0.99606 0.93539 0.99814 1.21397 0.99047 0.96523 0.95942 0.88488 1.20857 0.82073 0.78966 0.87557 1.43936 1.07733 1.61468 1.29371 1.90758 1.56796 1.46576 1.47109 1.21119 0.90169 1.01553 0.98693 0.94626 0.92931 0.94712 0.95679 0.88384 0.87969 0.95242 0.92468 0.90990 0.91986 0.91782 0.91602 0.91429 0.92066 0.77263 0.77331 0.90560 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.91 37.16 0.37 -2.33 16 2 C -0.12 -2.78 5.59 -26.73 -0.15 -2.93 16 3 C 0.14 3.57 4.60 -4.04 -0.02 3.55 16 4 N -0.44 -11.21 2.62 -114.81 -0.30 -11.51 16 5 C -0.32 -7.82 9.10 -14.94 -0.14 -7.96 16 6 H 0.10 2.23 5.96 -52.49 -0.31 1.92 16 7 C 0.03 0.68 5.33 -17.47 -0.09 0.59 16 8 N -0.87 -21.34 7.39 55.50 0.41 -20.93 16 9 Si 0.92 18.77 29.55 -169.99 -5.02 13.75 16 10 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 13 C 0.46 11.28 6.70 -10.98 -0.07 11.20 16 14 O -0.61 -16.71 15.77 5.55 0.09 -16.63 16 15 C -0.09 -1.77 1.73 -91.77 -0.16 -1.93 16 16 H 0.09 1.72 6.35 -51.93 -0.33 1.39 16 17 C -0.11 -1.75 5.15 -26.73 -0.14 -1.89 16 18 C -0.11 -1.38 5.92 -26.73 -0.16 -1.54 16 19 C -0.11 -1.20 5.10 -26.73 -0.14 -1.33 16 20 C -0.11 -1.45 2.52 -91.80 -0.23 -1.68 16 21 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 22 C 0.52 7.25 7.43 -10.99 -0.08 7.17 16 23 N -0.86 -7.59 8.77 31.22 0.27 -7.31 16 24 O -0.54 -10.17 16.82 5.56 0.09 -10.08 16 25 C -0.08 -1.42 3.36 -26.76 -0.09 -1.51 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.10 2.51 5.95 -51.92 -0.31 2.20 16 31 H 0.10 2.64 5.98 -51.93 -0.31 2.33 16 32 H 0.03 0.75 7.47 -51.93 -0.39 0.37 16 33 H 0.26 6.23 8.31 -40.82 -0.34 5.89 16 34 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 40 H 0.40 2.26 8.25 -40.82 -0.34 1.92 16 41 H 0.40 3.05 8.93 -40.82 -0.36 2.69 16 42 H 0.08 1.57 7.81 -51.93 -0.41 1.17 16 43 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 LS Contribution 336.72 15.07 5.07 5.07 Total: -1.00 -31.20 336.72 -7.41 -38.61 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.93 Total: 9.62 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -1.10 Total: -0.58 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.38 Total: -39.76 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: 0.18 Total: -26.70 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.75 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.20 -7.41 -38.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344815503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.869 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds