Wall clock time and date at job start Tue Mar 31 2020 06:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47177 * 2 1 4 4 N 1.46494 * 109.47137 * 180.02562 * 3 2 1 5 5 C 1.37102 * 120.00279 * 270.00351 * 4 3 2 6 6 H 1.07994 * 119.99972 * 137.29967 * 5 4 3 7 7 C 1.38952 * 119.99709 * 317.29901 * 5 4 3 8 8 N 1.31417 * 119.99411 * 163.08610 * 7 5 4 9 9 Si 1.86792 * 120.00453 * 343.08401 * 7 5 4 10 10 H 1.48505 * 109.46786 * 95.43239 * 9 7 5 11 11 H 1.48497 * 109.47309 * 215.43615 * 9 7 5 12 12 H 1.48497 * 109.47231 * 335.43844 * 9 7 5 13 13 C 1.34782 * 119.99956 * 90.00854 * 4 3 2 14 14 O 1.21288 * 119.99963 * 356.06397 * 13 4 3 15 15 C 1.50698 * 119.99975 * 176.06446 * 13 4 3 16 16 H 1.09003 * 109.46984 * 44.65895 * 15 13 4 17 17 C 1.52998 * 109.47547 * 284.65398 * 15 13 4 18 18 C 1.52998 * 109.47109 * 179.97438 * 17 15 13 19 19 C 1.52997 * 109.47096 * 60.00418 * 18 17 15 20 20 C 1.53001 * 109.47069 * 299.99511 * 19 18 17 21 21 H 1.08996 * 109.46957 * 300.00552 * 20 19 18 22 22 C 1.50693 * 109.47197 * 179.97438 * 20 19 18 23 23 N 1.34783 * 120.00096 * 60.00297 * 22 20 19 24 24 O 1.21279 * 120.00269 * 239.99941 * 22 20 19 25 25 C 1.53002 * 109.47077 * 60.00157 * 20 19 18 26 26 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47484 * 59.99469 * 1 2 3 28 28 H 1.09000 * 109.46837 * 299.99481 * 1 2 3 29 29 H 1.08991 * 109.47416 * 120.00761 * 2 1 3 30 30 H 1.09000 * 109.46837 * 240.00518 * 2 1 3 31 31 H 1.08991 * 109.47568 * 300.00667 * 3 2 1 32 32 H 1.09000 * 109.46814 * 60.00504 * 3 2 1 33 33 H 0.96997 * 119.99658 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46957 * 300.00404 * 17 15 13 35 35 H 1.08995 * 109.46836 * 59.99924 * 17 15 13 36 36 H 1.09001 * 109.46606 * 179.97438 * 18 17 15 37 37 H 1.08996 * 109.47166 * 299.99722 * 18 17 15 38 38 H 1.08998 * 109.47210 * 59.99425 * 19 18 17 39 39 H 1.08996 * 109.47069 * 179.97438 * 19 18 17 40 40 H 0.96998 * 119.99458 * 0.02562 * 23 22 20 41 41 H 0.97000 * 120.00134 * 179.97438 * 23 22 20 42 42 H 1.08999 * 109.47409 * 180.02562 * 25 20 19 43 43 H 1.08998 * 109.47298 * 60.00026 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.4422 1.1864 6 1 5.0563 0.8079 1.3098 7 6 3.7730 2.2581 2.2306 8 7 4.1992 2.0312 3.4528 9 14 2.6053 3.6775 1.8971 10 1 1.2099 3.2427 2.1603 11 1 2.9448 4.8172 2.7864 12 1 2.7328 4.1007 0.4794 13 6 4.1784 1.4428 -1.1682 14 8 3.5736 1.3711 -2.2171 15 6 5.6827 1.5324 -1.1703 16 1 6.0879 0.8582 -0.4157 17 6 6.1087 2.9674 -0.8538 18 6 7.6360 3.0581 -0.8554 19 6 8.1691 2.6600 -2.2331 20 6 7.7431 1.2250 -2.5497 21 1 8.1479 0.5510 -1.7948 22 6 8.2677 0.8332 -3.9069 23 7 9.5945 0.8387 -4.1441 24 8 7.4960 0.5127 -4.7860 25 6 6.2158 1.1342 -2.5481 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 0.8898 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9564 -0.8898 32 1 1.6767 1.9563 0.8900 33 1 3.9071 2.6005 4.1818 34 1 5.7035 3.6415 -1.6084 35 1 5.7293 3.2508 0.1279 36 1 7.9394 4.0805 -0.6303 37 1 8.0408 2.3840 -0.1005 38 1 7.7642 3.3341 -2.9880 39 1 9.2571 2.7251 -2.2344 40 1 10.2116 1.0946 -3.4409 41 1 9.9321 0.5862 -5.0176 42 1 5.9123 0.1118 -2.7732 43 1 5.8110 1.8083 -3.3029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344815505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:34 Heat of formation + Delta-G solvation = -101.027981 kcal Electronic energy + Delta-G solvation = -23570.889497 eV Core-core repulsion = 20228.841385 eV Total energy + Delta-G solvation = -3342.048112 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.09236 -38.94975 -36.84920 -35.19000 -33.69069 -32.99078 -31.65581 -30.57471 -30.41680 -26.04572 -24.86264 -23.69633 -22.56177 -21.17057 -20.51801 -19.45328 -18.86602 -17.58805 -16.92227 -16.22720 -16.06996 -15.22545 -15.05512 -14.47926 -14.33304 -14.02611 -13.95903 -13.64141 -13.33684 -12.98366 -12.77904 -12.41260 -12.26988 -12.04851 -11.89537 -11.57886 -11.34227 -11.01775 -10.94041 -10.86412 -10.75273 -10.44867 -10.31719 -10.16402 -10.05970 -9.86353 -9.76063 -9.68808 -9.52728 -9.12029 -8.44586 -7.70765 -6.47186 -4.12840 2.73014 3.04772 3.20271 3.28570 3.54817 3.77563 4.12295 4.40404 4.80883 4.87374 4.96889 5.04141 5.42111 5.49923 5.60813 5.62657 5.68076 5.72505 5.77413 5.85666 5.89766 5.95986 6.08099 6.17398 6.27189 6.33927 6.37183 6.41393 6.46436 6.52414 6.59438 6.67839 6.76554 6.81163 6.94111 6.95356 6.97550 7.32231 7.43045 8.10471 8.25632 8.31966 8.98009 9.37284 9.73684 10.63129 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.005635 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.906599 B = 4967.427055 C = 5898.344819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.104 3.896 4 N -0.468 5.468 5 C -0.336 4.336 6 H 0.102 0.898 7 C 0.069 3.931 8 N -0.865 5.865 9 Si 0.874 3.126 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.261 1.261 13 C 0.488 3.512 14 O -0.594 6.594 15 C -0.083 4.083 16 H 0.091 0.909 17 C -0.107 4.107 18 C -0.113 4.113 19 C -0.108 4.108 20 C -0.108 4.108 21 H 0.098 0.902 22 C 0.521 3.479 23 N -0.861 5.861 24 O -0.539 6.539 25 C -0.079 4.079 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.274 0.726 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.400 0.600 41 H 0.396 0.604 42 H 0.067 0.933 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.429 0.831 -5.845 10.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.019 4.019 4 N -0.189 5.189 5 C -0.463 4.463 6 H 0.120 0.880 7 C -0.138 4.138 8 N -0.501 5.501 9 Si 0.702 3.298 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.185 1.185 13 C 0.278 3.722 14 O -0.478 6.478 15 C -0.104 4.104 16 H 0.109 0.891 17 C -0.145 4.145 18 C -0.151 4.151 19 C -0.146 4.146 20 C -0.129 4.129 21 H 0.116 0.884 22 C 0.306 3.694 23 N -0.425 5.425 24 O -0.414 6.414 25 C -0.117 4.117 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.228 0.772 41 H 0.227 0.773 42 H 0.085 0.915 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.457 0.673 -6.577 9.965 hybrid contribution -0.089 0.714 0.244 0.760 sum 7.367 1.387 -6.333 9.814 Atomic orbital electron populations 1.21713 0.96508 1.01014 1.01292 1.21759 0.94671 0.98082 1.02455 1.21613 0.83106 0.96524 1.00644 1.43751 1.03711 1.65653 1.05777 1.18999 1.14322 1.24636 0.88376 0.88048 1.25368 0.96691 0.96881 0.94837 1.69718 1.43788 1.37502 0.99057 0.86949 0.80852 0.82654 0.79386 1.20179 1.21572 1.18502 1.20461 0.89599 0.78877 0.83277 1.90550 1.70519 1.54823 1.31919 1.20952 0.93326 0.98780 0.97341 0.89076 1.21403 0.94554 0.95156 1.03355 1.21504 0.96401 1.01348 0.95798 1.21545 0.99762 0.94385 0.98870 1.21397 0.98968 0.98793 0.93734 0.88411 1.20866 0.82063 0.75911 0.90567 1.43941 1.07900 1.72817 1.17815 1.90751 1.56498 1.47249 1.46933 1.21164 0.90435 1.03029 0.97072 0.93072 0.93074 0.93081 0.91321 0.92035 0.91692 0.92087 0.91582 0.92619 0.89489 0.91773 0.91357 0.91553 0.92076 0.77199 0.77341 0.91451 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.13 -2.61 6.26 -26.73 -0.17 -2.77 16 3 C 0.10 2.33 4.13 -4.04 -0.02 2.32 16 4 N -0.47 -11.12 2.10 -114.82 -0.24 -11.36 16 5 C -0.34 -8.34 7.81 -14.93 -0.12 -8.46 16 6 H 0.10 2.63 7.03 -52.49 -0.37 2.27 16 7 C 0.07 1.76 5.36 -17.46 -0.09 1.66 16 8 N -0.87 -23.05 13.96 55.50 0.77 -22.28 16 9 Si 0.87 20.18 24.91 -169.99 -4.23 15.94 16 10 H -0.27 -6.21 6.77 56.52 0.38 -5.82 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.26 -6.14 7.11 56.52 0.40 -5.73 16 13 C 0.49 11.35 6.84 -10.98 -0.08 11.27 16 14 O -0.59 -15.18 15.62 5.55 0.09 -15.09 16 15 C -0.08 -1.58 1.81 -91.77 -0.17 -1.75 16 16 H 0.09 1.73 6.90 -51.93 -0.36 1.37 16 17 C -0.11 -1.86 5.10 -26.73 -0.14 -2.00 16 18 C -0.11 -1.48 5.92 -26.73 -0.16 -1.64 16 19 C -0.11 -1.24 5.10 -26.73 -0.14 -1.38 16 20 C -0.11 -1.43 2.53 -91.77 -0.23 -1.66 16 21 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 22 C 0.52 7.13 7.42 -10.99 -0.08 7.05 16 23 N -0.86 -7.52 8.77 31.22 0.27 -7.24 16 24 O -0.54 -9.99 16.82 5.56 0.09 -9.89 16 25 C -0.08 -1.40 3.18 -26.73 -0.09 -1.49 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.47 7.48 -51.93 -0.39 1.08 16 32 H 0.06 1.39 3.56 -51.93 -0.18 1.20 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.71 7.03 -51.93 -0.37 1.35 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.52 7.57 -51.93 -0.39 0.12 16 40 H 0.40 2.28 8.25 -40.82 -0.34 1.94 16 41 H 0.40 3.01 8.93 -40.82 -0.36 2.64 16 42 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 43 H 0.07 1.49 7.89 -51.93 -0.41 1.08 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -31.42 337.00 -6.24 -37.65 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.97 Total: 8.07 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -1.10 Total: -0.88 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.81 Total: -40.87 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: 0.18 Total: -24.99 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.23 Total: 15.94 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.42 -6.24 -37.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344815505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.376 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds