Wall clock time and date at job start Tue Mar 31 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.08992 * 109.47046 * 304.99570 * 3 2 1 5 5 C 1.50699 * 109.46610 * 184.99834 * 3 2 1 6 6 H 1.08004 * 119.99731 * 239.99688 * 5 3 2 7 7 C 1.37871 * 120.00667 * 60.00191 * 5 3 2 8 8 N 1.31516 * 119.99699 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00537 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47273 * 89.99904 * 9 7 5 11 11 H 1.48501 * 109.47195 * 210.00108 * 9 7 5 12 12 H 1.48497 * 109.47285 * 329.99704 * 9 7 5 13 13 N 1.46496 * 109.47070 * 64.99833 * 3 2 1 14 14 C 1.34776 * 120.00212 * 274.99432 * 13 3 2 15 15 O 1.21288 * 119.99777 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00244 * 180.02562 * 14 13 3 17 17 H 1.09005 * 109.46933 * 300.00287 * 16 14 13 18 18 C 1.53000 * 109.47097 * 60.00450 * 16 14 13 19 19 C 1.52989 * 109.47094 * 179.97438 * 18 16 14 20 20 C 1.52999 * 109.47301 * 299.99974 * 19 18 16 21 21 C 1.53000 * 109.47025 * 59.99984 * 20 19 18 22 22 H 1.09004 * 109.46902 * 180.02562 * 21 20 19 23 23 C 1.50696 * 109.47162 * 60.00167 * 21 20 19 24 24 N 1.34781 * 119.99797 * 59.99862 * 23 21 20 25 25 O 1.21268 * 120.00323 * 239.99798 * 23 21 20 26 26 C 1.52997 * 109.47059 * 299.99936 * 21 20 19 27 27 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 30 30 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 31 31 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 32 32 H 0.96999 * 120.00336 * 180.02562 * 8 7 5 33 33 H 0.97000 * 119.99885 * 94.99899 * 13 3 2 34 34 H 1.09004 * 109.46902 * 300.00016 * 18 16 14 35 35 H 1.08997 * 109.47194 * 59.99499 * 18 16 14 36 36 H 1.09007 * 109.47400 * 179.97438 * 19 18 16 37 37 H 1.08999 * 109.47219 * 60.00155 * 19 18 16 38 38 H 1.09005 * 109.47029 * 299.99806 * 20 19 18 39 39 H 1.09001 * 109.47443 * 180.02562 * 20 19 18 40 40 H 0.97003 * 119.99968 * 0.02562 * 24 23 21 41 41 H 0.97000 * 119.99780 * 179.97438 * 24 23 21 42 42 H 1.08999 * 109.47405 * 299.99937 * 26 21 20 43 43 H 1.08996 * 109.46913 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1470 1.8891 0.6524 7 6 4.1433 0.8786 -1.2278 8 7 3.4063 0.3368 -2.1728 9 14 6.0049 0.8815 -1.3816 10 1 6.5549 -0.3500 -0.7599 11 1 6.3830 0.9226 -2.8170 12 1 6.5569 2.0740 -0.6900 13 7 1.6522 2.0975 1.2518 14 6 0.4349 2.6644 1.3669 15 8 -0.3398 2.6320 0.4342 16 6 0.0364 3.3387 2.6544 17 1 0.0677 2.6146 3.4686 18 6 1.0068 4.4835 2.9522 19 6 0.6018 5.1683 4.2589 20 6 -0.8172 5.7245 4.1248 21 6 -1.7876 4.5797 3.8269 22 1 -2.7985 4.9761 3.7309 23 6 -1.7447 3.5790 4.9528 24 7 -2.0650 3.9598 6.2054 25 8 -1.4220 2.4311 4.7319 26 6 -1.3826 3.8949 2.5201 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8294 -0.0617 -2.9494 33 1 2.2717 2.1232 1.9977 34 1 2.0178 4.0872 3.0474 35 1 0.9755 5.2074 2.1381 36 1 1.2934 5.9837 4.4714 37 1 0.6328 4.4445 5.0733 38 1 -0.8483 6.4484 3.3104 39 1 -1.1056 6.2129 5.0556 40 1 -2.3235 4.8780 6.3821 41 1 -2.0377 3.3156 6.9301 42 1 -1.4137 4.6187 1.7057 43 1 -2.0737 3.0791 2.3082 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346180801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:35 Heat of formation + Delta-G solvation = -107.265331 kcal Electronic energy + Delta-G solvation = -23508.852199 eV Core-core repulsion = 20166.533615 eV Total energy + Delta-G solvation = -3342.318583 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.66193 -38.82687 -36.75988 -34.87912 -33.93516 -32.33955 -31.35944 -30.78444 -30.13969 -26.85548 -24.03899 -23.55451 -22.53258 -21.57390 -20.00219 -19.40474 -19.08544 -17.39764 -17.07828 -16.43729 -15.85142 -15.34220 -15.05075 -14.77335 -14.52299 -14.07718 -13.98932 -13.52645 -13.34510 -12.66110 -12.46248 -12.37389 -12.16218 -12.03328 -11.63943 -11.34281 -11.16999 -11.10327 -10.92335 -10.86393 -10.71518 -10.52027 -10.23658 -10.10454 -10.02517 -9.84232 -9.59394 -9.49080 -8.94001 -8.65198 -8.40314 -7.64067 -6.04758 -4.13682 2.55979 3.28450 3.35053 3.37256 3.39197 3.65093 4.21267 4.42617 4.61553 4.65568 4.70741 4.94816 5.24038 5.26478 5.28825 5.35533 5.45003 5.53303 5.58638 5.82189 5.92501 6.03764 6.07537 6.17877 6.26308 6.50118 6.51547 6.55341 6.60001 6.69046 6.80162 7.16693 7.18675 7.32350 7.50351 7.63007 7.72155 7.86338 8.01566 8.17483 8.28846 8.83696 8.89788 9.33573 9.54884 11.00527 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026343 B = 0.004350 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.652594 B = 6435.840050 C = 6918.255234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.508 3.492 15 O -0.554 6.554 16 C -0.120 4.120 17 H 0.115 0.885 18 C -0.111 4.111 19 C -0.120 4.120 20 C -0.110 4.110 21 C -0.111 4.111 22 H 0.098 0.902 23 C 0.521 3.479 24 N -0.860 5.860 25 O -0.530 6.530 26 C -0.076 4.076 27 H 0.020 0.980 28 H 0.040 0.960 29 H 0.048 0.952 30 H 0.097 0.903 31 H 0.029 0.971 32 H 0.263 0.737 33 H 0.386 0.614 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.399 0.601 41 H 0.398 0.602 42 H 0.075 0.925 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.900 11.306 16.392 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.294 3.706 15 O -0.434 6.434 16 C -0.141 4.141 17 H 0.132 0.868 18 C -0.149 4.149 19 C -0.158 4.158 20 C -0.148 4.148 21 C -0.132 4.132 22 H 0.116 0.884 23 C 0.306 3.694 24 N -0.424 5.424 25 O -0.405 6.405 26 C -0.114 4.114 27 H 0.040 0.960 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.218 0.782 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.227 0.773 41 H 0.229 0.771 42 H 0.094 0.906 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.181 10.469 15.158 20.583 hybrid contribution 1.167 0.115 0.724 1.378 sum -8.014 10.584 15.882 20.700 Atomic orbital electron populations 1.21832 0.98345 0.97906 1.01316 1.21924 0.92659 0.99944 1.02071 1.18734 0.93967 0.89162 0.81323 0.93458 1.21258 0.90903 1.38724 1.06101 0.92214 1.24883 0.98448 0.94935 0.95444 1.69905 1.34995 1.37754 1.09383 0.86482 0.85126 0.78384 0.77288 1.20609 1.21135 1.19924 1.46465 1.14860 1.56155 1.18221 1.20336 0.82453 0.78998 0.88839 1.90633 1.51449 1.60504 1.40804 1.21592 0.95590 0.98576 0.98380 0.86751 1.21524 0.98805 0.97264 0.97303 1.21569 0.95991 1.00049 0.98153 1.21557 0.94729 0.96438 1.02040 1.21450 1.01367 0.95627 0.94751 0.88424 1.20743 0.75361 0.89224 0.84065 1.43947 1.72907 1.15511 1.10051 1.90721 1.46206 1.20259 1.83323 1.21092 0.96070 1.00321 0.93942 0.96045 0.94049 0.93270 0.88463 0.95171 0.92674 0.78204 0.91249 0.91444 0.91442 0.92092 0.90402 0.91808 0.77340 0.77134 0.90602 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.51 37.16 0.32 -2.97 16 2 C -0.13 -3.27 5.45 -26.73 -0.15 -3.42 16 3 C 0.27 7.08 2.24 -69.08 -0.15 6.92 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -14.44 8.73 -34.44 -0.30 -14.74 16 6 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -25.35 11.29 55.43 0.63 -24.72 16 9 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.71 -15.58 4.91 -54.93 -0.27 -15.85 16 14 C 0.51 10.64 5.72 -10.98 -0.06 10.58 16 15 O -0.55 -13.43 13.12 5.55 0.07 -13.36 16 16 C -0.12 -1.92 2.23 -91.77 -0.20 -2.13 16 17 H 0.11 1.96 5.51 -51.93 -0.29 1.67 16 18 C -0.11 -1.46 5.10 -26.74 -0.14 -1.59 16 19 C -0.12 -1.17 5.70 -26.74 -0.15 -1.33 16 20 C -0.11 -0.87 5.35 -26.73 -0.14 -1.01 16 21 C -0.11 -1.09 3.01 -91.78 -0.28 -1.37 16 22 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 23 C 0.52 5.75 5.91 -10.99 -0.06 5.69 16 24 N -0.86 -5.67 8.77 31.22 0.27 -5.40 16 25 O -0.53 -8.40 14.49 5.57 0.08 -8.32 16 26 C -0.08 -1.08 3.66 -26.73 -0.10 -1.18 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.99 5.64 -51.93 -0.29 0.69 16 29 H 0.05 1.24 7.85 -51.93 -0.41 0.83 16 30 H 0.10 2.73 5.95 -51.93 -0.31 2.42 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.39 7.58 7.96 -40.82 -0.32 7.25 16 34 H 0.07 0.92 7.57 -51.93 -0.39 0.53 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 37 H 0.06 0.63 7.22 -51.93 -0.37 0.26 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.34 7.57 -51.93 -0.39 -0.06 16 40 H 0.40 1.38 8.25 -40.82 -0.34 1.04 16 41 H 0.40 2.36 8.93 -40.82 -0.36 2.00 16 42 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 43 H 0.07 1.23 8.06 -51.93 -0.42 0.81 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -33.54 331.43 -7.55 -41.09 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.79 Total: 10.38 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.52 Total: -4.84 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.63 Total: -45.97 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: 0.15 Total: -21.68 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.54 -7.55 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346180801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.172 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds