Wall clock time and date at job start Tue Mar 31 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46894 * 60.00253 * 9 7 5 11 11 H 1.48500 * 109.47102 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47542 * 300.00050 * 9 7 5 13 13 N 1.46497 * 109.47195 * 64.99866 * 3 2 1 14 14 C 1.34777 * 120.00660 * 275.00187 * 13 3 2 15 15 O 1.21281 * 119.99633 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00373 * 179.97438 * 14 13 3 17 17 H 1.09005 * 109.46697 * 60.00148 * 16 14 13 18 18 C 1.52996 * 109.47281 * 300.00183 * 16 14 13 19 19 C 1.52995 * 109.47004 * 179.97438 * 18 16 14 20 20 C 1.52994 * 109.47267 * 60.00264 * 19 18 16 21 21 C 1.53002 * 109.47249 * 300.00154 * 20 19 18 22 22 H 1.09008 * 109.46725 * 299.99557 * 21 20 19 23 23 C 1.50700 * 109.47426 * 180.02562 * 21 20 19 24 24 N 1.34772 * 120.00513 * 59.99402 * 23 21 20 25 25 O 1.21283 * 119.99773 * 239.99710 * 23 21 20 26 26 C 1.52994 * 109.47264 * 59.99388 * 21 20 19 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 33 33 H 0.97010 * 119.99804 * 95.00047 * 13 3 2 34 34 H 1.08995 * 109.47199 * 299.99808 * 18 16 14 35 35 H 1.09003 * 109.47039 * 60.00063 * 18 16 14 36 36 H 1.09000 * 109.47317 * 179.97438 * 19 18 16 37 37 H 1.08998 * 109.47634 * 300.00291 * 19 18 16 38 38 H 1.09005 * 109.47309 * 59.99906 * 20 19 18 39 39 H 1.09001 * 109.47682 * 179.97438 * 20 19 18 40 40 H 0.97001 * 120.00033 * 0.02562 * 24 23 21 41 41 H 0.96995 * 120.00632 * 179.97438 * 24 23 21 42 42 H 1.09000 * 109.47469 * 180.02562 * 26 21 20 43 43 H 1.09005 * 109.46661 * 60.00636 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2351 11 1 6.3977 0.2169 -2.6505 12 1 6.4994 2.2817 -1.3823 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0362 3.3376 2.6549 17 1 0.7277 4.1530 2.8679 18 6 0.0799 2.3205 3.7970 19 6 -0.3245 3.0042 5.1046 20 6 -1.7433 3.5609 4.9715 21 6 -1.7870 4.5781 3.8294 22 1 -1.0953 5.3933 4.0422 23 6 -3.1844 5.1270 3.6986 24 7 -3.7534 5.7754 4.7341 25 8 -3.7970 4.9851 2.6616 26 6 -1.3826 3.8944 2.5218 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.8292 -0.0602 -2.9503 33 1 2.2720 2.1231 1.9978 34 1 -0.6115 1.5052 3.5840 35 1 1.0908 1.9241 3.8921 36 1 -0.2938 2.2795 5.9181 37 1 0.3671 3.8193 5.3174 38 1 -2.4350 2.7458 4.7587 39 1 -2.0316 4.0477 5.9032 40 1 -3.2633 5.8892 5.5634 41 1 -4.6526 6.1290 4.6498 42 1 -1.4133 4.6191 1.7082 43 1 -2.0743 3.0793 2.3090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346180804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:42 Heat of formation + Delta-G solvation = -113.112472 kcal Electronic energy + Delta-G solvation = -23105.483005 eV Core-core repulsion = 19762.910870 eV Total energy + Delta-G solvation = -3342.572134 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35868 -39.07819 -37.08838 -34.95583 -33.87850 -32.41470 -31.42406 -30.85672 -30.28822 -26.90884 -24.12077 -23.64745 -22.59696 -21.14407 -20.07385 -19.61545 -19.15233 -17.82355 -17.00474 -16.50709 -15.66792 -15.42730 -15.13257 -14.84354 -14.62755 -14.24691 -13.96278 -13.64021 -13.37163 -12.80956 -12.67446 -12.55325 -12.26524 -11.87474 -11.51292 -11.28185 -11.20939 -11.17694 -10.96489 -10.79732 -10.75295 -10.63924 -10.33338 -10.28173 -10.10469 -9.87275 -9.81899 -9.57147 -9.00604 -8.77643 -8.45053 -7.72944 -6.08693 -4.18227 2.53631 3.26855 3.32277 3.32940 3.34738 3.50808 4.12971 4.38698 4.52367 4.61384 4.69365 5.03836 5.11886 5.16747 5.22472 5.26134 5.35358 5.43480 5.50771 5.72558 5.85752 5.91142 5.97184 6.14798 6.17109 6.38946 6.44882 6.51546 6.54227 6.63023 6.72746 7.09676 7.13786 7.26594 7.43593 7.54731 7.66380 7.79481 7.95863 8.13694 8.23381 8.75621 8.83221 9.24597 9.49756 10.96525 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029926 B = 0.003793 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.404349 B = 7379.635737 C = 7635.904726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.709 5.709 14 C 0.504 3.496 15 O -0.545 6.545 16 C -0.109 4.109 17 H 0.090 0.910 18 C -0.113 4.113 19 C -0.114 4.114 20 C -0.110 4.110 21 C -0.108 4.108 22 H 0.097 0.903 23 C 0.519 3.481 24 N -0.860 5.860 25 O -0.534 6.534 26 C -0.077 4.077 27 H 0.021 0.979 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.030 0.970 31 H 0.098 0.902 32 H 0.265 0.735 33 H 0.386 0.614 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.399 0.601 41 H 0.398 0.602 42 H 0.076 0.924 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.837 7.527 18.505 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.357 5.357 14 C 0.288 3.712 15 O -0.424 6.424 16 C -0.130 4.130 17 H 0.108 0.892 18 C -0.150 4.150 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.130 4.130 22 H 0.116 0.884 23 C 0.304 3.696 24 N -0.424 5.424 25 O -0.410 6.410 26 C -0.115 4.115 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.218 0.782 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.227 0.773 41 H 0.229 0.771 42 H 0.095 0.905 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.599 7.191 16.847 20.235 hybrid contribution 1.211 0.237 0.684 1.411 sum -7.388 7.428 17.531 20.423 Atomic orbital electron populations 1.21839 0.98341 0.97917 1.01335 1.21920 0.92597 0.99878 1.02116 1.18747 0.94017 0.89164 0.81248 0.93422 1.21207 0.90837 1.38973 1.06228 0.92230 1.24888 0.98503 0.94878 0.95428 1.69889 1.35159 1.37599 1.09305 0.86533 0.85011 0.78263 0.77414 1.20209 1.21170 1.20225 1.46485 1.14730 1.56150 1.18321 1.20269 0.82688 0.79387 0.88841 1.90685 1.51407 1.59621 1.40643 1.21358 0.98398 0.98860 0.94420 0.89210 1.21544 1.02482 0.97782 0.93232 1.21516 0.95745 1.00306 0.97636 1.21551 0.98496 0.98345 0.96397 1.21398 0.93430 0.99403 0.98728 0.88448 1.20765 0.88792 0.76988 0.83033 1.43926 1.20495 1.60930 1.17069 1.90786 1.64538 1.57125 1.28506 1.21102 0.94808 1.01009 0.94593 0.96001 0.94187 0.93181 0.95161 0.88429 0.92546 0.78165 0.91277 0.91030 0.91335 0.91524 0.91211 0.91735 0.77250 0.77133 0.90527 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.82 2.24 -69.09 -0.15 6.67 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.93 11.29 55.43 0.63 -24.31 16 9 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.71 -14.49 4.91 -54.93 -0.27 -14.76 16 14 C 0.50 9.86 5.73 -10.99 -0.06 9.79 16 15 O -0.55 -12.97 13.12 5.56 0.07 -12.89 16 16 C -0.11 -1.52 2.52 -91.77 -0.23 -1.75 16 17 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 18 C -0.11 -1.28 5.10 -26.74 -0.14 -1.42 16 19 C -0.11 -0.92 5.92 -26.74 -0.16 -1.08 16 20 C -0.11 -0.87 5.10 -26.73 -0.14 -1.01 16 21 C -0.11 -1.09 2.52 -91.77 -0.23 -1.32 16 22 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 23 C 0.52 5.94 7.43 -10.99 -0.08 5.85 16 24 N -0.86 -5.77 8.77 31.22 0.27 -5.50 16 25 O -0.53 -8.94 16.82 5.56 0.09 -8.85 16 26 C -0.08 -1.10 3.06 -26.73 -0.08 -1.19 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 29 H 0.05 1.23 7.85 -51.93 -0.41 0.83 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.39 6.82 7.96 -40.82 -0.32 6.50 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.79 7.56 -51.93 -0.39 0.39 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.34 7.57 -51.93 -0.39 -0.05 16 40 H 0.40 1.39 8.25 -40.82 -0.34 1.05 16 41 H 0.40 2.36 8.93 -40.82 -0.36 2.00 16 42 H 0.08 1.28 8.06 -51.93 -0.42 0.86 16 43 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -33.68 337.97 -7.61 -41.29 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -6.97 Total: 8.53 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.50 Total: -4.22 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.63 Total: -44.56 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: 0.17 Total: -21.75 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.68 -7.61 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346180804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.823 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds