Wall clock time and date at job start Tue Mar 31 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47266 * 2 1 4 4 H 1.08997 * 109.47619 * 305.00730 * 3 2 1 5 5 C 1.50696 * 109.47242 * 184.99765 * 3 2 1 6 6 H 1.08004 * 120.00141 * 240.00263 * 5 3 2 7 7 C 1.37880 * 119.99994 * 60.00553 * 5 3 2 8 8 N 1.31517 * 119.99901 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00054 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47062 * 60.00345 * 9 7 5 11 11 H 1.48508 * 109.46722 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46972 * 299.99798 * 9 7 5 13 13 N 1.46505 * 109.46662 * 65.00213 * 3 2 1 14 14 C 1.34777 * 120.00115 * 274.99892 * 13 3 2 15 15 O 1.21288 * 119.99593 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00369 * 180.02562 * 14 13 3 17 17 H 1.08998 * 109.46862 * 300.00562 * 16 14 13 18 18 C 1.53006 * 109.47239 * 59.99719 * 16 14 13 19 19 C 1.52997 * 109.47164 * 180.02562 * 18 16 14 20 20 C 1.53002 * 109.46978 * 299.99874 * 19 18 16 21 21 C 1.52996 * 109.46891 * 60.00410 * 20 19 18 22 22 H 1.09001 * 109.47372 * 59.99964 * 21 20 19 23 23 C 1.50703 * 109.46946 * 179.97438 * 21 20 19 24 24 N 1.34777 * 120.00161 * 299.99543 * 23 21 20 25 25 O 1.21278 * 119.99985 * 120.00236 * 23 21 20 26 26 C 1.52997 * 109.47466 * 180.02562 * 16 14 13 27 27 H 1.08997 * 109.46930 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47130 * 299.99327 * 1 2 3 29 29 H 1.09003 * 109.46963 * 59.99953 * 1 2 3 30 30 H 1.09010 * 109.46976 * 240.00248 * 2 1 3 31 31 H 1.09004 * 109.47354 * 120.00415 * 2 1 3 32 32 H 0.96997 * 119.99977 * 180.02562 * 8 7 5 33 33 H 0.97003 * 120.00244 * 94.99922 * 13 3 2 34 34 H 1.09001 * 109.47002 * 60.00070 * 18 16 14 35 35 H 1.09000 * 109.47050 * 300.00336 * 18 16 14 36 36 H 1.09002 * 109.47045 * 180.02562 * 19 18 16 37 37 H 1.09001 * 109.47375 * 59.99966 * 19 18 16 38 38 H 1.08992 * 109.47056 * 300.00064 * 20 19 18 39 39 H 1.09004 * 109.47006 * 180.02562 * 20 19 18 40 40 H 0.97005 * 119.99463 * 0.02562 * 24 23 21 41 41 H 0.96993 * 120.00115 * 180.02562 * 24 23 21 42 42 H 1.09002 * 109.47153 * 59.99773 * 26 16 14 43 43 H 1.09001 * 109.46832 * 299.99964 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3376 -2.1734 9 14 6.0050 0.8812 -1.3817 10 1 6.5975 0.1472 -0.2350 11 1 6.3978 0.2178 -2.6510 12 1 6.4995 2.2815 -1.3820 13 7 1.6525 2.0973 1.2519 14 6 0.4352 2.6642 1.3671 15 8 -0.3396 2.6318 0.4345 16 6 0.0367 3.3384 2.6546 17 1 0.0681 2.6143 3.4687 18 6 1.0072 4.4831 2.9526 19 6 0.6030 5.1671 4.2601 20 6 -0.8161 5.7233 4.1272 21 6 -1.7866 4.5786 3.8293 22 1 -1.7550 3.8543 4.6432 23 6 -3.1845 5.1263 3.6989 24 7 -3.7537 5.7744 4.7345 25 8 -3.7974 4.9838 2.6621 26 6 -1.3826 3.8940 2.5214 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 3.8293 -0.0608 -2.9500 33 1 2.2720 2.1230 1.9979 34 1 0.9759 5.2072 2.1385 35 1 2.0182 4.0868 3.0477 36 1 1.2942 5.9829 4.4722 37 1 0.6346 4.4428 5.0741 38 1 -0.8477 6.4476 3.3133 39 1 -1.1040 6.2110 5.0585 40 1 -3.2633 5.8887 5.5637 41 1 -4.6535 6.1266 4.6508 42 1 -2.0738 3.0783 2.3094 43 1 -1.4144 4.6181 1.7072 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346180805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:45 Heat of formation + Delta-G solvation = -113.114868 kcal Electronic energy + Delta-G solvation = -23062.351617 eV Core-core repulsion = 19719.779379 eV Total energy + Delta-G solvation = -3342.572238 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.35157 -39.07224 -37.09184 -34.95202 -33.87743 -32.41472 -31.44850 -30.83986 -30.25624 -26.92098 -24.11485 -23.64167 -22.60475 -21.11980 -20.06878 -19.61685 -19.15651 -17.82304 -17.00867 -16.52456 -15.62732 -15.35769 -15.17298 -14.93689 -14.59833 -14.25674 -13.81064 -13.62908 -13.51738 -12.79807 -12.65898 -12.45202 -12.38739 -11.79703 -11.51376 -11.28560 -11.21477 -11.17750 -10.96519 -10.79241 -10.74759 -10.63838 -10.34700 -10.27346 -10.08973 -9.87094 -9.81754 -9.57525 -9.00928 -8.77708 -8.45154 -7.72885 -6.08746 -4.18220 2.53714 3.26779 3.32194 3.32859 3.34777 3.50787 4.13353 4.38450 4.52831 4.62077 4.69905 5.04429 5.12640 5.17826 5.22316 5.26680 5.35804 5.43770 5.51395 5.73091 5.86557 5.91925 5.98219 6.16150 6.18921 6.39623 6.44897 6.51405 6.54223 6.63170 6.72562 7.09499 7.13826 7.26508 7.43471 7.54631 7.66321 7.79449 7.95752 8.13766 8.23246 8.75598 8.83204 9.24579 9.49718 10.96480 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028603 B = 0.003930 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.673959 B = 7123.023217 C = 7809.880979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.709 5.709 14 C 0.503 3.497 15 O -0.545 6.545 16 C -0.108 4.108 17 H 0.089 0.911 18 C -0.113 4.113 19 C -0.114 4.114 20 C -0.110 4.110 21 C -0.108 4.108 22 H 0.097 0.903 23 C 0.519 3.481 24 N -0.860 5.860 25 O -0.534 6.534 26 C -0.077 4.077 27 H 0.021 0.979 28 H 0.038 0.962 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.386 0.614 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.399 0.601 41 H 0.398 0.602 42 H 0.076 0.924 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.997 9.462 17.737 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.357 5.357 14 C 0.288 3.712 15 O -0.424 6.424 16 C -0.130 4.130 17 H 0.107 0.893 18 C -0.151 4.151 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.129 4.129 22 H 0.115 0.885 23 C 0.304 3.696 24 N -0.424 5.424 25 O -0.410 6.410 26 C -0.115 4.115 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.218 0.782 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.228 0.772 41 H 0.229 0.771 42 H 0.094 0.906 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.759 9.127 16.079 20.051 hybrid contribution 1.162 0.122 0.730 1.377 sum -6.598 9.248 16.809 20.288 Atomic orbital electron populations 1.21838 0.98339 0.97942 1.01309 1.21931 0.92606 0.99920 1.02137 1.18746 0.94025 0.89139 0.81247 0.93408 1.21204 0.90821 1.38989 1.06206 0.92225 1.24890 0.98495 0.94885 0.95426 1.69889 1.35160 1.37579 1.09321 0.86535 0.85020 0.78266 0.77416 1.20205 1.21171 1.20224 1.46485 1.14726 1.56132 1.18342 1.20273 0.82710 0.79252 0.88963 1.90687 1.51374 1.59759 1.40539 1.21356 0.96375 0.97912 0.97351 0.89306 1.21551 0.98591 0.97190 0.97759 1.21519 0.95564 1.00221 0.97893 1.21551 0.94791 0.96706 1.01754 1.21406 0.91192 0.98880 1.01469 0.88477 1.20767 0.88665 0.77086 0.83064 1.43929 1.20386 1.61027 1.17083 1.90784 1.64650 1.57010 1.28509 1.21112 0.94526 1.00920 0.94954 0.95967 0.94250 0.93153 0.88401 0.95156 0.92546 0.78166 0.91198 0.90958 0.91315 0.91565 0.91187 0.91742 0.77248 0.77134 0.90558 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.83 2.24 -69.08 -0.15 6.67 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.92 11.30 55.43 0.63 -24.29 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.71 -14.49 4.91 -54.93 -0.27 -14.76 16 14 C 0.50 9.86 5.72 -10.99 -0.06 9.79 16 15 O -0.55 -12.97 13.12 5.55 0.07 -12.90 16 16 C -0.11 -1.51 2.52 -91.77 -0.23 -1.74 16 17 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 18 C -0.11 -1.31 5.10 -26.73 -0.14 -1.45 16 19 C -0.11 -0.94 5.92 -26.73 -0.16 -1.09 16 20 C -0.11 -0.88 5.10 -26.73 -0.14 -1.02 16 21 C -0.11 -1.09 2.52 -91.75 -0.23 -1.32 16 22 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 23 C 0.52 5.94 7.43 -10.98 -0.08 5.86 16 24 N -0.86 -5.78 8.77 31.22 0.27 -5.51 16 25 O -0.53 -8.95 16.82 5.56 0.09 -8.85 16 26 C -0.08 -1.11 3.07 -26.71 -0.08 -1.19 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 29 H 0.05 1.24 7.85 -51.93 -0.41 0.83 16 30 H 0.10 2.67 5.95 -51.92 -0.31 2.36 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 33 H 0.39 6.82 7.96 -40.82 -0.32 6.50 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.82 7.56 -51.93 -0.39 0.43 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.34 7.56 -51.93 -0.39 -0.05 16 40 H 0.40 1.40 8.25 -40.82 -0.34 1.06 16 41 H 0.40 2.36 8.93 -40.82 -0.36 2.00 16 42 H 0.08 1.27 8.06 -51.93 -0.42 0.85 16 43 H 0.08 1.31 8.06 -51.93 -0.42 0.90 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -33.65 337.97 -7.61 -41.26 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.97 Total: 8.65 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.50 Total: -4.28 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.63 Total: -44.56 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: 0.17 Total: -21.75 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.65 -7.61 -41.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346180805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.856 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds