Wall clock time and date at job start Tue Mar 31 2020 06:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47229 * 2 1 4 4 N 1.46505 * 109.47128 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99743 * 269.99980 * 4 3 2 6 6 H 1.08001 * 119.99536 * 140.69656 * 5 4 3 7 7 C 1.38950 * 120.00197 * 320.69880 * 5 4 3 8 8 N 1.31413 * 119.99917 * 159.03693 * 7 5 4 9 9 Si 1.86803 * 119.99949 * 339.03541 * 7 5 4 10 10 H 1.48502 * 109.47056 * 95.81745 * 9 7 5 11 11 H 1.48503 * 109.47083 * 215.81991 * 9 7 5 12 12 H 1.48503 * 109.47262 * 335.81820 * 9 7 5 13 13 C 1.34769 * 120.00021 * 90.00130 * 4 3 2 14 14 O 1.21294 * 120.00103 * 5.01585 * 13 4 3 15 15 C 1.50700 * 120.00000 * 185.01225 * 13 4 3 16 16 C 1.53007 * 109.47018 * 185.43071 * 15 13 4 17 17 C 1.53002 * 109.46712 * 179.23629 * 16 15 13 18 18 N 1.46499 * 109.46513 * 179.97438 * 17 16 15 19 19 C 1.34782 * 119.99517 * 179.97438 * 18 17 16 20 20 O 1.21275 * 120.00282 * 0.02562 * 19 18 17 21 21 C 1.50708 * 119.99688 * 179.97438 * 19 18 17 22 22 C 1.52994 * 117.49735 * 248.62421 * 21 19 18 23 23 C 1.52992 * 60.00086 * 252.51375 * 22 21 19 24 24 H 1.08989 * 109.47327 * 59.99379 * 1 2 3 25 25 H 1.08997 * 109.46940 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46884 * 299.99565 * 1 2 3 27 27 H 1.09001 * 109.46884 * 240.00435 * 2 1 3 28 28 H 1.09001 * 109.47461 * 120.00218 * 2 1 3 29 29 H 1.09001 * 109.46832 * 60.00403 * 3 2 1 30 30 H 1.09001 * 109.47078 * 300.00453 * 3 2 1 31 31 H 0.96996 * 119.99489 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.46859 * 65.43229 * 15 13 4 33 33 H 1.09000 * 109.47176 * 305.43122 * 15 13 4 34 34 H 1.09002 * 109.46762 * 59.23959 * 16 15 13 35 35 H 1.08993 * 109.47209 * 299.23862 * 16 15 13 36 36 H 1.08999 * 109.47327 * 299.99689 * 17 16 15 37 37 H 1.08995 * 109.47178 * 59.99956 * 17 16 15 38 38 H 0.96999 * 120.00752 * 0.02562 * 18 17 16 39 39 H 1.08997 * 115.55054 * 34.33167 * 21 19 18 40 40 H 1.09000 * 117.50604 * 0.02562 * 22 21 19 41 41 H 1.09006 * 117.49743 * 145.02373 * 22 21 19 42 42 H 1.09001 * 117.50359 * 252.51339 * 23 22 21 43 43 H 1.09006 * 117.51553 * 107.48367 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1910 1.4422 1.1864 6 1 5.0878 0.8497 1.2917 7 6 3.7324 2.2043 2.2540 8 7 4.1088 1.9128 3.4789 9 14 2.5810 3.6430 1.9481 10 1 1.1760 3.2024 2.1412 11 1 2.8921 4.7376 2.9022 12 1 2.7594 4.1329 0.5575 13 6 4.1784 1.4426 -1.1680 14 8 3.5750 1.5346 -2.2162 15 6 5.6811 1.3286 -1.1712 16 6 6.2018 1.4889 -2.6010 17 6 7.7287 1.3921 -2.6015 18 7 8.2271 1.5451 -3.9706 19 6 9.5516 1.4946 -4.2150 20 8 10.3307 1.3220 -3.3018 21 6 10.0644 1.6513 -5.6235 22 6 10.6902 0.4236 -6.2882 23 6 11.5781 1.5844 -5.8357 24 1 -0.3633 0.5139 -0.8898 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.7889 2.4450 4.2241 32 1 5.9721 0.3513 -0.7860 33 1 6.1061 2.1091 -0.5401 34 1 5.8992 2.4608 -2.9909 35 1 5.7875 0.7004 -3.2291 36 1 8.1430 2.1808 -1.9734 37 1 8.0313 0.4204 -2.2115 38 1 7.6041 1.6835 -4.7010 39 1 9.4969 2.3328 -6.2573 40 1 10.7307 -0.4977 -5.7071 41 1 10.5343 0.2971 -7.3596 42 1 12.0065 2.2217 -6.6093 43 1 12.2031 1.4274 -4.9566 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346497774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:20 Heat of formation + Delta-G solvation = -60.741168 kcal Electronic energy + Delta-G solvation = -21909.774404 eV Core-core repulsion = 18569.473260 eV Total energy + Delta-G solvation = -3340.301144 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.96939 -38.96835 -36.61539 -35.65508 -35.02408 -33.08509 -32.20413 -31.59770 -27.58137 -25.78798 -24.84488 -23.62224 -22.67382 -21.64975 -20.99440 -20.03420 -18.94086 -17.53290 -17.00124 -16.26725 -15.82991 -15.70075 -15.28061 -15.17881 -14.52244 -14.25927 -14.13586 -13.74540 -13.52697 -13.00732 -12.70189 -12.64499 -12.32814 -11.98523 -11.82933 -11.67222 -11.59828 -11.35773 -11.13486 -10.96734 -10.87666 -10.81708 -10.73323 -10.48311 -10.40403 -10.08037 -9.89195 -9.79459 -9.20429 -9.04614 -8.61273 -7.80208 -6.52082 -4.13127 2.43095 3.02384 3.08994 3.19110 3.27565 3.64738 3.69832 4.09502 4.34976 4.49779 4.59526 4.64064 4.88893 4.92652 5.23100 5.30412 5.32540 5.50442 5.53613 5.55564 5.60747 5.68875 5.82915 5.87603 5.92881 5.95069 6.01203 6.10733 6.27808 6.34775 6.39170 6.40940 6.45747 6.54114 6.66539 6.73192 6.88914 7.36414 7.48612 8.05137 8.19951 8.21058 8.91492 9.31708 9.66119 10.58528 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023674 B = 0.003227 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.443226 B = 8674.361619 C = 9350.855951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.102 3.898 4 N -0.466 5.466 5 C -0.347 4.347 6 H 0.105 0.895 7 C 0.069 3.931 8 N -0.858 5.858 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.262 1.262 13 C 0.481 3.519 14 O -0.603 6.603 15 C -0.117 4.117 16 C -0.112 4.112 17 C 0.117 3.883 18 N -0.723 5.723 19 C 0.538 3.462 20 O -0.543 6.543 21 C -0.195 4.195 22 C -0.154 4.154 23 C -0.149 4.149 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.275 0.725 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.402 0.598 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.542 -1.067 -14.379 15.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.021 4.021 4 N -0.186 5.186 5 C -0.474 4.474 6 H 0.122 0.878 7 C -0.138 4.138 8 N -0.493 5.493 9 Si 0.703 3.297 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.186 1.186 13 C 0.271 3.729 14 O -0.488 6.488 15 C -0.157 4.157 16 C -0.151 4.151 17 C -0.006 4.006 18 N -0.374 5.374 19 C 0.324 3.676 20 O -0.421 6.421 21 C -0.216 4.216 22 C -0.191 4.191 23 C -0.186 4.186 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.236 0.764 39 H 0.141 0.859 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.786 -1.104 -13.963 15.154 hybrid contribution -1.037 0.881 -0.061 1.362 sum 4.749 -0.223 -14.024 14.808 Atomic orbital electron populations 1.21709 0.96376 1.01075 1.01380 1.21763 0.94788 0.97962 1.02413 1.21620 0.82822 0.96602 1.01030 1.43750 1.03893 1.65104 1.05816 1.19062 1.11972 1.28775 0.87605 0.87798 1.25335 0.96797 0.97003 0.94699 1.69761 1.43621 1.37592 0.98357 0.86951 0.80558 0.82959 0.79258 1.20107 1.21458 1.18590 1.20397 0.89568 0.79421 0.83470 1.90526 1.70694 1.55601 1.32017 1.21252 0.93946 1.04289 0.96228 1.21521 0.92066 1.03421 0.98066 1.21489 0.94591 1.02299 0.82269 1.45986 1.06989 1.73670 1.10755 1.19656 0.82281 0.76126 0.89492 1.90701 1.56068 1.49214 1.46088 1.22216 0.98688 1.04888 0.95819 1.22932 1.02603 0.92736 1.00839 1.22944 0.91008 1.01008 1.03690 0.93045 0.93006 0.92995 0.92245 0.91190 0.91910 0.91389 0.91454 0.89679 0.88776 0.91092 0.91021 0.91207 0.91371 0.76410 0.85878 0.88228 0.87832 0.87998 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.91 37.16 0.37 -1.94 16 2 C -0.13 -2.51 6.26 -26.73 -0.17 -2.68 16 3 C 0.10 2.25 4.24 -4.04 -0.02 2.23 16 4 N -0.47 -10.98 2.14 -114.81 -0.25 -11.23 16 5 C -0.35 -8.80 8.93 -14.93 -0.13 -8.93 16 6 H 0.10 2.73 7.44 -52.49 -0.39 2.34 16 7 C 0.07 1.80 5.32 -17.47 -0.09 1.71 16 8 N -0.86 -23.34 13.96 55.50 0.77 -22.56 16 9 Si 0.88 20.36 25.01 -169.99 -4.25 16.11 16 10 H -0.27 -6.14 6.71 56.52 0.38 -5.76 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 13 C 0.48 10.76 7.62 -10.99 -0.08 10.67 16 14 O -0.60 -14.37 15.54 5.55 0.09 -14.29 16 15 C -0.12 -2.13 4.35 -27.88 -0.12 -2.25 16 16 C -0.11 -1.69 4.63 -26.73 -0.12 -1.81 16 17 C 0.12 1.60 5.67 -4.04 -0.02 1.58 16 18 N -0.72 -8.60 5.56 -60.29 -0.33 -8.93 16 19 C 0.54 7.02 7.61 -10.98 -0.08 6.94 16 20 O -0.54 -9.29 16.26 5.56 0.09 -9.20 16 21 C -0.19 -1.80 6.19 -91.77 -0.57 -2.37 16 22 C -0.15 -1.20 10.23 -26.74 -0.27 -1.48 16 23 C -0.15 -1.27 10.04 -26.74 -0.27 -1.54 16 24 H 0.05 0.76 8.14 -51.94 -0.42 0.33 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.06 1.42 3.41 -51.93 -0.18 1.24 16 30 H 0.07 1.49 7.36 -51.93 -0.38 1.11 16 31 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 33 H 0.09 1.74 7.86 -51.93 -0.41 1.33 16 34 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 35 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.40 3.75 8.47 -40.82 -0.35 3.40 16 39 H 0.12 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.11 1.11 7.67 -51.93 -0.40 0.71 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -30.85 354.73 -7.29 -38.14 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.17 Total: 6.49 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -1.59 Total: 0.13 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.19 Total: -42.73 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.18 Total: -23.49 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.25 Total: 16.11 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.85 -7.29 -38.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346497774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.599 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds