Wall clock time and date at job start Tue Mar 31 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46951 * 2 1 4 4 N 1.46496 * 109.46803 * 119.99966 * 2 1 3 5 5 C 1.47316 * 126.68902 * 120.00115 * 4 2 1 6 6 C 1.51582 * 103.59163 * 179.73523 * 5 4 2 7 7 O 1.21237 * 127.15047 * 179.97438 * 6 5 4 8 8 N 1.34760 * 105.68688 * 359.97438 * 6 5 4 9 9 C 1.46506 * 124.17763 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47248 * 89.97772 * 9 8 6 11 11 C 1.53005 * 109.47052 * 299.99987 * 10 9 8 12 12 C 1.53002 * 109.47112 * 59.99686 * 10 9 8 13 13 C 1.52998 * 109.47238 * 180.02562 * 10 9 8 14 14 C 1.50702 * 109.47217 * 179.97438 * 13 10 9 15 15 H 1.07998 * 119.99868 * 359.97438 * 14 13 10 16 16 C 1.37870 * 120.00119 * 180.02562 * 14 13 10 17 17 N 1.31512 * 119.99986 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00165 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46992 * 59.99877 * 18 16 14 20 20 H 1.48496 * 109.47334 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47357 * 300.00061 * 18 16 14 22 22 C 1.33794 * 111.64866 * 0.02562 * 8 6 5 23 23 O 1.21539 * 123.77555 * 180.02562 * 22 8 6 24 24 H 1.08996 * 109.47065 * 300.00108 * 1 2 3 25 25 H 1.09000 * 109.46796 * 59.99908 * 1 2 3 26 26 H 1.09002 * 109.47250 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47065 * 239.99892 * 2 1 3 28 28 H 1.09003 * 109.47185 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47445 * 299.99694 * 3 2 1 30 30 H 1.09004 * 109.47172 * 60.00324 * 3 2 1 31 31 H 1.09003 * 110.59821 * 298.26429 * 5 4 2 32 32 H 1.09001 * 110.59449 * 61.20625 * 5 4 2 33 33 H 1.09000 * 109.46815 * 209.98039 * 9 8 6 34 34 H 1.09005 * 109.46879 * 329.97341 * 9 8 6 35 35 H 1.09000 * 109.46958 * 59.99462 * 11 10 9 36 36 H 1.08992 * 109.47323 * 180.02562 * 11 10 9 37 37 H 1.09005 * 109.46937 * 300.00346 * 11 10 9 38 38 H 1.08997 * 109.46872 * 60.00598 * 12 10 9 39 39 H 1.09005 * 109.46764 * 179.97438 * 12 10 9 40 40 H 1.09000 * 109.47276 * 300.00125 * 12 10 9 41 41 H 1.08995 * 109.46832 * 299.99733 * 13 10 9 42 42 H 1.09000 * 109.47058 * 60.00006 * 13 10 9 43 43 H 0.96998 * 120.00517 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8685 -1.8931 1.2328 6 6 3.0585 -2.1500 2.7146 7 8 3.6944 -3.0462 3.2267 8 7 2.3735 -1.1751 3.3442 9 6 2.2864 -1.0390 4.8003 10 6 3.4344 -0.1597 5.3000 11 6 4.7706 -0.8050 4.9271 12 6 3.3373 1.2228 4.6518 13 6 3.3438 -0.0181 6.8207 14 6 4.4750 0.8475 7.3129 15 1 5.1875 1.2554 6.6113 16 6 4.6008 1.1177 8.6590 17 7 3.7335 0.6206 9.5134 18 14 6.0033 2.1901 9.2692 19 1 5.9096 3.5325 8.6410 20 1 5.9153 2.3276 10.7452 21 1 7.2998 1.5633 8.9065 22 6 1.7828 -0.3467 2.4753 23 8 1.1094 0.6100 2.8047 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 2.3630 -2.7347 0.7593 32 1 3.8270 -1.6997 0.7511 33 1 1.3344 -0.5793 5.0659 34 1 2.3555 -2.0240 5.2620 35 1 4.8354 -0.9063 3.8437 36 1 5.5885 -0.1789 5.2834 37 1 4.8398 -1.7900 5.3888 38 1 2.3854 1.6826 4.9174 39 1 4.1550 1.8494 5.0081 40 1 3.4022 1.1216 3.5684 41 1 2.3919 0.4414 7.0866 42 1 3.4132 -1.0032 7.2821 43 1 3.8217 0.8110 10.4604 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348963317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:22 Heat of formation + Delta-G solvation = -54.573851 kcal Electronic energy + Delta-G solvation = -23829.233853 eV Core-core repulsion = 20489.200143 eV Total energy + Delta-G solvation = -3340.033709 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.29380 -38.60066 -37.33626 -36.04634 -35.34045 -32.74962 -31.75702 -27.62328 -27.39458 -27.09167 -26.54870 -26.39497 -23.46133 -22.74576 -21.71721 -19.47677 -18.22635 -17.25016 -16.88778 -16.35811 -16.14782 -15.70913 -15.07774 -14.57350 -14.26700 -14.20284 -14.07700 -13.82597 -13.54317 -13.19867 -12.78242 -12.69407 -12.40211 -12.27290 -12.00815 -11.77598 -11.57309 -11.52287 -10.99759 -10.90650 -10.90019 -10.79748 -10.51555 -10.48229 -10.23426 -9.91940 -9.70909 -9.57868 -9.09133 -9.04164 -8.73427 -8.30762 -5.95372 -3.95756 1.78400 2.18407 3.02041 3.21948 3.36326 3.40778 3.43144 4.07709 4.46566 4.49994 4.74743 4.87934 4.92904 4.98314 5.26897 5.38081 5.40915 5.42325 5.53072 5.61076 5.65823 5.70026 5.82745 5.89042 6.06768 6.11480 6.22636 6.30179 6.41148 6.48685 6.51633 6.76476 6.85131 7.11695 7.19622 7.21097 7.33837 7.55482 7.66944 7.81138 8.03144 8.27729 8.46634 9.07958 9.66839 11.16253 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026052 B = 0.004556 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.506675 B = 6144.614093 C = 6551.700355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.180 3.820 3 C -0.171 4.171 4 N -0.631 5.631 5 C 0.062 3.938 6 C 0.519 3.481 7 O -0.469 6.469 8 N -0.567 5.567 9 C 0.126 3.874 10 C -0.075 4.075 11 C -0.120 4.120 12 C -0.117 4.117 13 C 0.038 3.962 14 C -0.508 4.508 15 H 0.058 0.942 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C 0.701 3.299 23 O -0.532 6.532 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.021 0.979 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.023 0.977 41 H 0.019 0.981 42 H 0.018 0.982 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.533 -3.867 -21.521 22.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.078 3.922 3 C -0.229 4.229 4 N -0.372 5.372 5 C -0.065 4.065 6 C 0.305 3.695 7 O -0.339 6.339 8 N -0.312 5.312 9 C 0.006 3.994 10 C -0.076 4.076 11 C -0.178 4.178 12 C -0.174 4.174 13 C 0.000 4.000 14 C -0.546 4.546 15 H 0.076 0.924 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C 0.404 3.596 23 O -0.405 6.405 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.042 0.958 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.664 -3.767 -20.892 21.735 hybrid contribution 0.837 0.525 0.425 1.075 sum -3.827 -3.243 -20.467 21.072 Atomic orbital electron populations 1.22227 0.94433 1.02498 1.03614 1.20838 0.94400 0.92834 0.84080 1.22237 1.01541 0.95518 1.03640 1.47873 1.54062 1.29816 1.05423 1.22484 0.98022 0.90092 0.95889 1.20744 0.78082 0.81259 0.89383 1.90818 1.37984 1.31510 1.73582 1.46547 1.47318 1.27375 1.09920 1.22092 1.01742 1.02175 0.73415 1.21030 0.92644 0.93930 0.99974 1.21725 0.97892 1.00653 0.97484 1.21683 1.02215 0.96681 0.96822 1.19077 0.97553 0.97272 0.86053 1.21130 1.11289 1.30234 0.91982 0.92405 1.24987 0.96149 0.96191 0.97079 1.69946 1.35974 1.45167 1.02484 0.86711 0.82892 0.81105 0.77606 1.20336 1.21385 1.20338 1.15871 0.80178 0.82552 0.81035 1.90953 1.41683 1.27767 1.80094 0.90647 0.91209 0.92451 0.88907 0.92316 0.91230 0.90526 0.86659 0.86631 0.89094 0.89308 0.96029 0.91737 0.93078 0.92973 0.92055 0.95794 0.96274 0.96362 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.23 37.16 0.34 -1.06 16 2 C 0.18 1.49 3.58 -67.93 -0.24 1.25 16 3 C -0.17 -1.55 9.23 37.16 0.34 -1.20 16 4 N -0.63 -6.89 2.88 -172.39 -0.50 -7.38 16 5 C 0.06 0.56 7.65 -4.31 -0.03 0.53 16 6 C 0.52 7.27 6.66 -10.56 -0.07 7.20 16 7 O -0.47 -7.83 16.87 5.59 0.09 -7.74 16 8 N -0.57 -8.91 2.13 -120.72 -0.26 -9.16 16 9 C 0.13 2.28 4.73 -4.04 -0.02 2.26 16 10 C -0.07 -1.56 0.60 -154.51 -0.09 -1.65 16 11 C -0.12 -2.43 7.23 37.16 0.27 -2.16 16 12 C -0.12 -2.40 7.10 37.16 0.26 -2.13 16 13 C 0.04 0.96 4.04 -27.88 -0.11 0.85 16 14 C -0.51 -14.03 7.65 -34.44 -0.26 -14.29 16 15 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 18 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.70 10.54 6.22 -88.01 -0.55 9.99 16 23 O -0.53 -9.47 13.73 5.33 0.07 -9.39 16 24 H 0.07 0.85 6.98 -51.93 -0.36 0.49 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.50 8.12 -51.93 -0.42 0.08 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.93 6.95 -51.93 -0.36 0.57 16 31 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.67 7.86 -51.93 -0.41 1.26 16 34 H 0.09 1.59 8.00 -51.93 -0.42 1.17 16 35 H 0.02 0.39 6.19 -51.93 -0.32 0.07 16 36 H 0.06 1.38 6.61 -51.93 -0.34 1.04 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 1.11 8.10 -51.93 -0.42 0.69 16 39 H 0.06 1.33 6.62 -51.93 -0.34 0.98 16 40 H 0.02 0.45 6.18 -51.93 -0.32 0.13 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 338.00 15.07 5.09 5.09 Total: -1.00 -32.57 338.00 -6.99 -39.56 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.96 Total: -2.74 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.26 Total: 1.10 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: -0.02 Total: -42.68 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.17 Total: -17.13 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.57 -6.99 -39.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348963317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.012 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds