Wall clock time and date at job start Tue Mar 31 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46891 * 2 1 4 4 N 1.46502 * 109.47132 * 180.02562 * 3 2 1 5 5 C 1.47312 * 126.68837 * 269.98287 * 4 3 2 6 6 C 1.51588 * 103.59518 * 180.02562 * 5 4 3 7 7 O 1.21229 * 127.16201 * 180.02562 * 6 5 4 8 8 N 1.34766 * 105.68123 * 0.02562 * 6 5 4 9 9 C 1.46503 * 124.17688 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.46940 * 270.03974 * 9 8 6 11 11 C 1.53000 * 109.47416 * 299.99791 * 10 9 8 12 12 C 1.52997 * 109.47379 * 59.99926 * 10 9 8 13 13 C 1.53003 * 109.47223 * 180.02562 * 10 9 8 14 14 C 1.50700 * 109.47537 * 180.02562 * 13 10 9 15 15 H 1.08000 * 119.99773 * 0.02562 * 14 13 10 16 16 C 1.37874 * 120.00192 * 179.97438 * 14 13 10 17 17 N 1.31518 * 119.99980 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00029 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47398 * 60.00038 * 18 16 14 20 20 H 1.48506 * 109.47030 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47227 * 299.99982 * 18 16 14 22 22 C 1.33794 * 111.64801 * 359.97438 * 8 6 5 23 23 O 1.21533 * 123.77500 * 179.73376 * 22 8 6 24 24 H 1.08994 * 109.47057 * 299.99936 * 1 2 3 25 25 H 1.08998 * 109.47032 * 60.00343 * 1 2 3 26 26 H 1.08998 * 109.46873 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47543 * 240.00272 * 2 1 3 28 28 H 1.08998 * 109.47032 * 119.99657 * 2 1 3 29 29 H 1.09002 * 109.47008 * 60.00329 * 3 2 1 30 30 H 1.09003 * 109.47443 * 299.99838 * 3 2 1 31 31 H 1.09006 * 110.60307 * 61.50966 * 5 4 3 32 32 H 1.09003 * 110.60206 * 298.56345 * 5 4 3 33 33 H 1.08999 * 109.46937 * 30.04228 * 9 8 6 34 34 H 1.09004 * 109.47081 * 150.04225 * 9 8 6 35 35 H 1.08996 * 109.46866 * 60.00118 * 11 10 9 36 36 H 1.09001 * 109.47534 * 179.97438 * 11 10 9 37 37 H 1.09004 * 109.47371 * 300.00218 * 11 10 9 38 38 H 1.09007 * 109.46923 * 59.99809 * 12 10 9 39 39 H 1.09003 * 109.47698 * 179.97438 * 12 10 9 40 40 H 1.08996 * 109.47108 * 300.00007 * 12 10 9 41 41 H 1.09007 * 109.46794 * 300.00016 * 13 10 9 42 42 H 1.08999 * 109.47509 * 59.99835 * 13 10 9 43 43 H 0.96998 * 120.00028 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3856 1.4428 1.1803 6 6 5.7798 1.4434 0.5851 7 8 6.8326 1.4433 1.1862 8 7 5.6053 1.4441 -0.7512 9 6 6.7007 1.4454 -1.7241 10 6 7.0816 2.8883 -2.0612 11 6 5.8706 3.6100 -2.6557 12 6 7.5297 3.6082 -0.7877 13 6 8.2251 2.8897 -3.0777 14 6 8.6008 4.3110 -3.4093 15 1 8.0767 5.1312 -2.9414 16 6 9.6143 4.5641 -4.3091 17 7 10.2535 3.5652 -4.8778 18 14 10.0804 6.3258 -4.7195 19 1 10.5160 7.0236 -3.4831 20 1 11.1911 6.3271 -5.7054 21 1 8.9054 7.0273 -5.2960 22 6 4.3083 1.4434 -1.0797 23 8 3.9014 1.4485 -2.2248 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 4.2248 0.5461 1.7789 32 1 4.2238 2.3390 1.7793 33 1 7.5634 0.9312 -1.3006 34 1 6.3813 0.9325 -2.6314 35 1 5.0557 3.6090 -1.9319 36 1 6.1418 4.6381 -2.8954 37 1 5.5513 3.0971 -3.5630 38 1 8.3926 3.0941 -0.3642 39 1 7.8016 4.6361 -1.0279 40 1 6.7148 3.6073 -0.0639 41 1 9.0881 2.3754 -2.6545 42 1 7.9055 2.3770 -3.9849 43 1 10.9663 3.7433 -5.5111 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348994238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:25 Heat of formation + Delta-G solvation = -58.882893 kcal Electronic energy + Delta-G solvation = -23408.886979 eV Core-core repulsion = 20068.666416 eV Total energy + Delta-G solvation = -3340.220563 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.27912 -38.51595 -37.29680 -36.10263 -35.24144 -33.18890 -32.06859 -28.82996 -27.10223 -26.69079 -26.40591 -25.77791 -23.08259 -22.57041 -21.63593 -20.12492 -18.22512 -17.19586 -17.03738 -16.55919 -16.14935 -15.66135 -15.11183 -14.79309 -14.56118 -14.32589 -14.07071 -13.95436 -13.56253 -13.37602 -12.86803 -12.68707 -12.44861 -12.28306 -12.00902 -11.78413 -11.68812 -11.10939 -10.99958 -10.92004 -10.90791 -10.82176 -10.64595 -10.51476 -10.23793 -10.01853 -9.71646 -9.59603 -9.10936 -9.05496 -8.74293 -8.30953 -5.95626 -3.96043 1.76288 2.17464 3.01298 3.19264 3.36255 3.40646 3.43049 4.07048 4.48122 4.49821 4.61828 4.84361 4.90374 4.92637 5.03029 5.29254 5.35353 5.41181 5.44123 5.60369 5.63951 5.68868 5.73485 5.87551 5.88902 5.96753 6.19113 6.23444 6.39850 6.45593 6.48707 6.76156 6.84711 7.11211 7.19040 7.20514 7.29907 7.53526 7.66653 7.80794 8.02938 8.23627 8.46339 9.07720 9.66551 11.16011 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029364 B = 0.004057 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.334226 B = 6899.819423 C = 7301.614695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.152 3.848 4 N -0.633 5.633 5 C 0.062 3.938 6 C 0.519 3.481 7 O -0.468 6.468 8 N -0.567 5.567 9 C 0.126 3.874 10 C -0.076 4.076 11 C -0.117 4.117 12 C -0.120 4.120 13 C 0.038 3.962 14 C -0.509 4.509 15 H 0.058 0.942 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C 0.699 3.301 23 O -0.534 6.534 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.023 0.977 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.021 0.979 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.607 -6.552 13.450 23.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C 0.031 3.969 4 N -0.373 5.373 5 C -0.065 4.065 6 C 0.306 3.694 7 O -0.338 6.338 8 N -0.311 5.311 9 C 0.006 3.994 10 C -0.076 4.076 11 C -0.175 4.175 12 C -0.177 4.177 13 C 0.001 3.999 14 C -0.547 4.547 15 H 0.076 0.924 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C 0.402 3.598 23 O -0.406 6.406 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.170 -6.588 12.955 22.496 hybrid contribution 0.363 0.930 -0.228 1.024 sum -16.807 -5.658 12.727 21.829 Atomic orbital electron populations 1.21682 0.94769 1.02156 1.02085 1.21977 0.96370 0.97114 1.02935 1.21366 0.74534 0.97221 1.03745 1.47662 1.06106 1.78133 1.05415 1.22474 0.87535 1.05881 0.90561 1.20743 0.91073 0.74974 0.82653 1.90818 1.30718 1.45986 1.66257 1.46527 1.08192 1.67091 1.09300 1.22103 0.86304 1.00367 0.90657 1.21037 0.98097 0.91076 0.97433 1.21690 0.95131 1.01363 0.99278 1.21722 0.98991 1.01750 0.95270 1.19076 0.90906 0.97613 0.92327 1.21138 1.17215 0.92160 1.24165 0.92378 1.24994 0.96433 0.96766 0.96254 1.69951 1.23648 1.30588 1.29396 0.86705 0.78023 0.85421 0.78124 1.20335 1.21390 1.20318 1.15893 0.80947 0.77683 0.85312 1.90980 1.76860 1.54230 1.18577 0.92533 0.92276 0.92335 0.91212 0.91713 0.89790 0.89278 0.86671 0.86519 0.89235 0.89077 0.95839 0.91995 0.92947 0.93063 0.91717 0.96025 0.96350 0.96269 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.48 16 2 C -0.15 -1.05 6.26 -26.73 -0.17 -1.21 16 3 C 0.15 1.22 6.15 -4.04 -0.02 1.19 16 4 N -0.63 -6.88 3.02 -180.00 -0.54 -7.42 16 5 C 0.06 0.56 7.66 -4.31 -0.03 0.53 16 6 C 0.52 7.24 6.66 -10.55 -0.07 7.17 16 7 O -0.47 -7.77 16.87 5.60 0.09 -7.68 16 8 N -0.57 -8.93 2.13 -120.73 -0.26 -9.18 16 9 C 0.13 2.28 4.73 -4.04 -0.02 2.26 16 10 C -0.08 -1.57 0.60 -154.51 -0.09 -1.67 16 11 C -0.12 -2.42 7.09 37.16 0.26 -2.16 16 12 C -0.12 -2.42 7.23 37.16 0.27 -2.15 16 13 C 0.04 0.97 4.04 -27.88 -0.11 0.86 16 14 C -0.51 -14.06 7.65 -34.44 -0.26 -14.33 16 15 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 18 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 C 0.70 10.67 6.75 -88.02 -0.59 10.08 16 23 O -0.53 -9.85 15.97 5.34 0.09 -9.77 16 24 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.82 8.03 -51.93 -0.42 0.40 16 31 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.60 8.00 -51.93 -0.42 1.18 16 34 H 0.09 1.68 7.86 -51.93 -0.41 1.27 16 35 H 0.02 0.44 6.17 -51.93 -0.32 0.12 16 36 H 0.06 1.34 6.62 -51.93 -0.34 1.00 16 37 H 0.05 1.13 8.10 -51.93 -0.42 0.71 16 38 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 39 H 0.06 1.38 6.62 -51.93 -0.34 1.04 16 40 H 0.02 0.39 6.19 -51.93 -0.32 0.06 16 41 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -32.98 343.46 -7.38 -40.36 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -7.07 Total: -3.72 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -0.57 Total: 1.60 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: -0.06 Total: -42.78 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.18 Total: -17.44 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.98 -7.38 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348994238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.522 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds