Wall clock time and date at job start Tue Mar 31 2020 06:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46925 * 2 1 4 4 N 1.46499 * 109.46839 * 179.97438 * 3 2 1 5 5 C 1.37098 * 119.99753 * 264.74480 * 4 3 2 6 6 H 1.08004 * 119.99081 * 146.17092 * 5 4 3 7 7 C 1.38946 * 120.00436 * 326.17404 * 5 4 3 8 8 N 1.31418 * 119.99697 * 337.67602 * 7 5 4 9 9 Si 1.86795 * 120.00127 * 157.68148 * 7 5 4 10 10 H 1.48491 * 109.47676 * 89.99677 * 9 7 5 11 11 H 1.48501 * 109.46906 * 210.00026 * 9 7 5 12 12 H 1.48502 * 109.46946 * 329.99489 * 9 7 5 13 13 C 1.34780 * 119.99862 * 84.75583 * 4 3 2 14 14 O 1.21290 * 119.99723 * 179.97438 * 13 4 3 15 15 C 1.50697 * 119.99929 * 359.97438 * 13 4 3 16 16 C 1.53005 * 109.47112 * 180.02562 * 15 13 4 17 17 C 1.52998 * 109.47263 * 180.02562 * 16 15 13 18 18 C 1.52993 * 110.21898 * 63.06919 * 17 16 15 19 19 C 1.54475 * 110.24381 * 185.00042 * 17 16 15 20 20 C 1.54634 * 101.76557 * 93.58586 * 19 17 16 21 21 C 1.51275 * 104.19504 * 24.79307 * 20 19 17 22 22 O 1.21291 * 124.94138 * 163.78570 * 21 20 19 23 23 N 1.34420 * 110.11751 * 343.75170 * 21 20 19 24 24 H 1.09004 * 109.46933 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47513 * 300.00219 * 1 2 3 26 26 H 1.09004 * 109.47139 * 60.00262 * 1 2 3 27 27 H 1.09000 * 109.47283 * 240.00149 * 2 1 3 28 28 H 1.08995 * 109.47198 * 119.99902 * 2 1 3 29 29 H 1.09000 * 109.47018 * 59.99987 * 3 2 1 30 30 H 1.09004 * 109.46999 * 299.99824 * 3 2 1 31 31 H 0.97001 * 119.99658 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47510 * 300.00679 * 15 13 4 33 33 H 1.08998 * 109.47063 * 60.00674 * 15 13 4 34 34 H 1.09001 * 109.47083 * 300.00445 * 16 15 13 35 35 H 1.09002 * 109.46615 * 59.99861 * 16 15 13 36 36 H 1.08998 * 109.47241 * 59.99650 * 18 17 16 37 37 H 1.08995 * 109.47365 * 179.97438 * 18 17 16 38 38 H 1.09007 * 109.47249 * 299.99960 * 18 17 16 39 39 H 1.09002 * 110.97082 * 211.69989 * 19 17 16 40 40 H 1.08993 * 110.97258 * 335.46618 * 19 17 16 41 41 H 1.09004 * 110.48698 * 143.47947 * 20 19 17 42 42 H 1.09006 * 110.47971 * 265.98556 * 20 19 17 43 43 H 0.97001 * 124.34419 * 179.61114 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1899 1.5514 1.1832 6 1 5.1328 1.0401 1.3101 7 6 3.6712 2.3195 2.2184 8 7 2.8001 3.2688 1.9595 9 14 4.2122 2.0029 3.9781 10 1 5.4015 2.8362 4.2879 11 1 3.1071 2.3529 4.9062 12 1 4.5579 0.5677 4.1390 13 6 4.1794 1.3357 -1.1614 14 8 5.3923 1.3361 -1.1609 15 6 3.4264 1.2156 -2.4613 16 6 4.4211 1.1086 -3.6189 17 6 3.6566 0.9874 -4.9387 18 6 2.8297 2.2501 -5.1887 19 6 4.6402 0.7526 -6.1065 20 6 4.6536 -0.7908 -6.2019 21 6 3.3253 -1.2105 -5.6122 22 8 2.8196 -2.3045 -5.7480 23 7 2.7873 -0.1948 -4.9152 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 2.4382 3.8052 2.6821 32 1 2.7999 0.3239 -2.4373 33 1 2.7996 2.0964 -2.6007 34 1 5.0478 2.0001 -3.6430 35 1 5.0477 0.2277 -3.4792 36 1 3.4921 3.1143 -5.2383 37 1 2.2911 2.1510 -6.1310 38 1 2.1171 2.3848 -4.3749 39 1 4.2647 1.1971 -7.0282 40 1 5.6311 1.1371 -5.8652 41 1 4.7267 -1.1080 -7.2422 42 1 5.4786 -1.2017 -5.6199 43 1 1.9342 -0.2379 -4.4556 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355612366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:14 Heat of formation + Delta-G solvation = -87.304828 kcal Electronic energy + Delta-G solvation = -23311.518878 eV Core-core repulsion = 19970.065847 eV Total energy + Delta-G solvation = -3341.453031 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.66758 -38.64095 -37.13050 -35.29977 -33.01343 -32.36031 -31.38967 -31.18525 -29.52523 -26.17300 -25.42130 -24.50017 -23.06577 -20.99291 -20.78636 -20.09530 -18.59420 -17.02951 -16.80708 -16.29802 -15.57233 -15.32525 -14.83734 -14.45713 -14.41603 -13.95138 -13.80019 -13.62799 -13.52331 -13.15278 -12.68942 -12.62653 -12.31743 -12.12829 -12.00451 -11.64680 -11.54970 -11.40689 -11.24091 -11.13339 -10.98874 -10.75339 -10.58173 -10.44380 -10.35741 -10.20533 -9.91408 -9.83894 -9.08154 -8.94521 -8.38755 -7.48649 -6.34413 -3.94630 2.63532 3.15756 3.24875 3.30707 3.36337 3.91106 4.12489 4.25027 4.39832 4.60701 4.79397 4.96709 4.97740 5.12070 5.26497 5.46282 5.51707 5.55133 5.59145 5.62862 5.66868 5.73125 5.74412 5.85411 5.91604 5.98874 6.04326 6.12902 6.30043 6.32806 6.41666 6.48113 6.54086 6.60877 6.86113 6.91408 7.07417 7.27316 7.58703 8.24182 8.28590 8.50777 9.18955 9.42484 10.02096 10.69220 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022341 B = 0.004571 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.982583 B = 6124.474267 C = 6578.887442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.102 3.898 4 N -0.441 5.441 5 C -0.307 4.307 6 H 0.091 0.909 7 C 0.036 3.964 8 N -0.870 5.870 9 Si 0.915 3.085 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.456 3.544 14 O -0.586 6.586 15 C -0.134 4.134 16 C -0.102 4.102 17 C 0.153 3.847 18 C -0.156 4.156 19 C -0.123 4.123 20 C -0.157 4.157 21 C 0.520 3.480 22 O -0.545 6.545 23 N -0.717 5.717 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.046 0.954 31 H 0.267 0.733 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.193 -1.411 -12.608 13.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C -0.022 4.022 4 N -0.160 5.160 5 C -0.435 4.435 6 H 0.108 0.892 7 C -0.168 4.168 8 N -0.508 5.508 9 Si 0.741 3.259 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.244 3.756 14 O -0.470 6.470 15 C -0.174 4.174 16 C -0.141 4.141 17 C 0.067 3.933 18 C -0.214 4.214 19 C -0.161 4.161 20 C -0.197 4.197 21 C 0.307 3.693 22 O -0.423 6.423 23 N -0.372 5.372 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.131 0.869 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -2.854 -1.826 -12.608 13.055 hybrid contribution -0.357 0.009 1.228 1.279 sum -3.210 -1.817 -11.380 11.963 Atomic orbital electron populations 1.21676 0.96332 1.00705 1.01519 1.21981 0.94883 0.99391 1.01656 1.21655 0.82128 0.94379 1.04056 1.43524 1.04560 1.62883 1.05011 1.19434 1.06712 1.28348 0.88970 0.89167 1.25298 0.97319 0.93747 1.00438 1.69920 1.31092 1.16970 1.32861 0.86123 0.78292 0.79142 0.82307 1.20306 1.20815 1.19443 1.20296 0.88071 0.82285 0.84913 1.90506 1.14188 1.55349 1.86961 1.21640 0.99007 1.02483 0.94308 1.21691 0.97474 1.03912 0.91040 1.21189 0.90392 0.85644 0.96091 1.22132 1.00537 0.96527 1.02180 1.22696 1.00560 0.94872 0.97922 1.22355 0.96927 0.97040 1.03393 1.20861 0.86964 0.83599 0.77924 1.90741 1.67418 1.22303 1.61804 1.46418 1.23239 1.14174 1.53405 0.93443 0.92714 0.93230 0.93302 0.91770 0.86857 0.93590 0.92291 0.90742 0.90154 0.89978 0.91036 0.90676 0.92163 0.91446 0.89954 0.88826 0.88351 0.87699 0.75304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.14 -2.52 6.17 -26.73 -0.16 -2.68 16 3 C 0.10 2.15 4.72 -4.04 -0.02 2.13 16 4 N -0.44 -10.93 2.56 -114.81 -0.29 -11.22 16 5 C -0.31 -8.43 8.98 -14.93 -0.13 -8.56 16 6 H 0.09 2.62 7.70 -52.48 -0.40 2.21 16 7 C 0.04 0.93 4.92 -17.47 -0.09 0.84 16 8 N -0.87 -23.00 11.33 55.50 0.63 -22.37 16 9 Si 0.91 20.44 29.61 -169.99 -5.03 15.41 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 C 0.46 10.75 7.59 -10.99 -0.08 10.66 16 14 O -0.59 -15.86 15.81 5.55 0.09 -15.78 16 15 C -0.13 -2.27 3.87 -27.88 -0.11 -2.38 16 16 C -0.10 -1.48 3.67 -26.73 -0.10 -1.58 16 17 C 0.15 1.65 0.87 -130.91 -0.11 1.53 16 18 C -0.16 -1.44 8.52 37.15 0.32 -1.12 16 19 C -0.12 -1.07 6.21 -25.10 -0.16 -1.22 16 20 C -0.16 -1.57 6.86 -26.74 -0.18 -1.76 16 21 C 0.52 7.08 8.43 -10.86 -0.09 6.99 16 22 O -0.54 -9.64 18.03 5.55 0.10 -9.54 16 23 N -0.72 -8.52 4.87 -46.62 -0.23 -8.74 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.84 6.59 -51.93 -0.34 0.50 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.11 2.67 5.34 -51.93 -0.28 2.39 16 30 H 0.05 0.88 6.66 -51.93 -0.35 0.53 16 31 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 32 H 0.07 1.19 5.78 -51.93 -0.30 0.89 16 33 H 0.08 1.26 5.84 -51.93 -0.30 0.95 16 34 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.66 6.58 -51.93 -0.34 0.32 16 39 H 0.08 0.58 7.91 -51.93 -0.41 0.17 16 40 H 0.09 0.74 7.89 -51.93 -0.41 0.33 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.41 4.64 8.65 -40.82 -0.35 4.28 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -32.79 342.83 -6.97 -39.76 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.85 Total: 6.17 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -0.55 Total: 1.14 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.11 Total: -42.34 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: 0.19 Total: -25.31 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.79 -6.97 -39.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355612366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.542 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds