Wall clock time and date at job start Tue Mar 31 2020 05:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21288 * 120.00081 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00464 * 180.02562 * 14 13 3 17 17 H 1.09001 * 109.67280 * 59.99105 * 16 14 13 18 18 C 1.53072 * 109.67030 * 299.49844 * 16 14 13 19 19 C 1.50193 * 109.88701 * 191.42246 * 18 16 14 20 20 O 1.21285 * 118.22960 * 197.51790 * 19 18 16 21 21 N 1.33351 * 123.52404 * 17.46684 * 19 18 16 22 22 C 1.45759 * 124.10519 * 357.86670 * 21 19 18 23 23 H 1.09001 * 109.13534 * 258.84726 * 22 21 19 24 24 C 1.53001 * 109.29874 * 139.36257 * 22 21 19 25 25 C 1.52993 * 109.47342 * 63.96580 * 24 22 21 26 26 C 1.52923 * 110.48805 * 19.04952 * 22 21 19 27 27 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 29 29 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 30 30 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 31 31 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 32 32 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 34 34 H 1.09004 * 109.39974 * 311.49255 * 18 16 14 35 35 H 1.08995 * 109.40488 * 71.23508 * 18 16 14 36 36 H 0.97000 * 117.94818 * 177.84631 * 21 19 18 37 37 H 1.09002 * 109.46893 * 183.96294 * 24 22 21 38 38 H 1.08995 * 109.46949 * 303.95790 * 24 22 21 39 39 H 1.09002 * 109.47441 * 179.97438 * 25 24 22 40 40 H 1.09000 * 109.47043 * 300.00225 * 25 24 22 41 41 H 1.09003 * 109.47258 * 59.99277 * 25 24 22 42 42 H 1.08994 * 109.60270 * 189.49365 * 26 22 21 43 43 H 1.09003 * 109.73350 * 69.08084 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4361 2.1285 2.0883 11 1 6.4412 -0.2952 2.1653 12 1 6.6156 0.8506 0.0352 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3395 2.6321 -0.4344 16 6 0.0365 3.3377 -2.6549 17 1 0.0664 2.6157 -3.4709 18 6 0.9974 4.4915 -2.9522 19 6 0.4527 5.3351 -4.0692 20 8 1.2130 6.0833 -4.6462 21 7 -0.8216 5.3048 -4.4610 22 6 -1.8316 4.4229 -3.8894 23 1 -1.9878 3.5772 -4.5591 24 6 -3.1445 5.1928 -3.7323 25 6 -3.6638 5.6024 -5.1118 26 6 -1.3807 3.9081 -2.5219 27 1 -0.3634 -1.0275 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 3.8288 -0.0530 2.9544 33 1 2.2721 2.1230 -1.9977 34 1 1.1131 5.1056 -2.0591 35 1 1.9681 4.0890 -3.2415 36 1 -1.0934 5.9075 -5.1707 37 1 -3.8814 4.5577 -3.2405 38 1 -2.9729 6.0842 -3.1291 39 1 -4.5994 6.1505 -4.9999 40 1 -2.9269 6.2374 -5.6036 41 1 -3.8353 4.7108 -5.7150 42 1 -2.0597 3.1254 -2.1837 43 1 -1.3793 4.7271 -1.8025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358077034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:45 Heat of formation + Delta-G solvation = -102.176798 kcal Electronic energy + Delta-G solvation = -23059.187009 eV Core-core repulsion = 19717.089081 eV Total energy + Delta-G solvation = -3342.097928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.70683 -38.96526 -37.12427 -35.16713 -33.90676 -32.38232 -32.14455 -30.83030 -29.11254 -27.11766 -25.45200 -23.57881 -22.65073 -21.96470 -20.16033 -19.42827 -19.21511 -17.53778 -17.04403 -16.43918 -15.73393 -15.47806 -15.14306 -14.75705 -14.62168 -14.25670 -13.99738 -13.70379 -13.64289 -13.14076 -12.92655 -12.69855 -12.19632 -11.97551 -11.65624 -11.52192 -11.41287 -11.27724 -11.22651 -11.08074 -10.98221 -10.87744 -10.84373 -10.35041 -10.19619 -10.02111 -9.65461 -9.21569 -9.07996 -8.93810 -8.51564 -7.86321 -6.14183 -4.23566 2.59404 3.14972 3.24122 3.29091 3.31366 3.33484 3.90962 4.33111 4.36248 4.51981 4.64948 4.74563 4.82612 4.92276 5.06726 5.17578 5.18050 5.35169 5.38376 5.54884 5.63810 5.66862 5.73820 5.85803 5.90089 5.97532 6.16578 6.35702 6.41655 6.62109 6.66754 7.00151 7.15861 7.23121 7.33086 7.41267 7.59428 7.70310 7.87431 8.13754 8.15689 8.62597 8.75237 9.08094 9.43993 10.91078 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024940 B = 0.004138 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.424440 B = 6765.644632 C = 7660.671227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.706 5.706 14 C 0.507 3.493 15 O -0.545 6.545 16 C -0.114 4.114 17 H 0.098 0.902 18 C -0.126 4.126 19 C 0.526 3.474 20 O -0.560 6.560 21 N -0.716 5.716 22 C 0.139 3.861 23 H 0.077 0.923 24 C -0.136 4.136 25 C -0.156 4.156 26 C -0.110 4.110 27 H 0.022 0.978 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.031 0.969 31 H 0.099 0.901 32 H 0.264 0.736 33 H 0.388 0.612 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.396 0.604 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.579 5.913 -12.326 17.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.353 5.353 14 C 0.291 3.709 15 O -0.424 6.424 16 C -0.136 4.136 17 H 0.116 0.884 18 C -0.166 4.166 19 C 0.313 3.687 20 O -0.439 6.439 21 N -0.369 5.369 22 C 0.034 3.966 23 H 0.094 0.906 24 C -0.174 4.174 25 C -0.213 4.213 26 C -0.148 4.148 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.220 0.780 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.232 0.768 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.623 5.994 -11.551 17.448 hybrid contribution 1.145 0.101 -0.474 1.244 sum -10.477 6.095 -12.025 17.074 Atomic orbital electron populations 1.21836 0.98375 0.98017 1.01163 1.21936 0.92587 0.99846 1.02297 1.18789 0.94221 0.89171 0.80985 0.93283 1.21241 0.90743 1.39173 1.06176 0.92060 1.24881 0.98594 0.94773 0.95392 1.69894 1.35140 1.37684 1.09241 0.86465 0.84874 0.77651 0.78232 1.20560 1.21098 1.19818 1.46527 1.14557 1.55625 1.18575 1.20073 0.82942 0.79395 0.88530 1.90679 1.51402 1.60045 1.40275 1.21491 0.96078 0.97550 0.98483 0.88418 1.21651 1.00155 0.96584 0.98237 1.20142 0.81672 0.82726 0.84158 1.90759 1.55923 1.41343 1.55871 1.45712 1.09136 1.41965 1.40100 1.21114 0.87644 0.92370 0.95509 0.90555 1.21917 0.96170 1.01125 0.98213 1.21811 1.01100 1.01561 0.96842 1.21740 0.95577 1.02248 0.95212 0.95890 0.93152 0.94327 0.95040 0.88312 0.92570 0.77950 0.87511 0.87436 0.76788 0.90018 0.91025 0.92229 0.92856 0.92330 0.88694 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.52 37.16 0.32 -2.59 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.51 2.24 -69.09 -0.15 6.36 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.77 8.73 -34.44 -0.30 -14.07 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 8 N -0.88 -24.30 11.30 55.43 0.63 -23.67 16 9 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.71 -13.57 4.93 -54.94 -0.27 -13.84 16 14 C 0.51 8.93 5.70 -10.99 -0.06 8.87 16 15 O -0.55 -11.46 13.04 5.55 0.07 -11.39 16 16 C -0.11 -1.44 2.60 -91.56 -0.24 -1.68 16 17 H 0.10 1.08 8.13 -51.93 -0.42 0.66 16 18 C -0.13 -1.60 5.20 -28.09 -0.15 -1.75 16 19 C 0.53 6.92 7.71 -11.86 -0.09 6.83 16 20 O -0.56 -9.51 17.78 5.55 0.10 -9.41 16 21 N -0.72 -7.18 5.12 -54.84 -0.28 -7.46 16 22 C 0.14 1.17 3.08 -68.37 -0.21 0.96 16 23 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 24 C -0.14 -0.94 5.58 -26.73 -0.15 -1.09 16 25 C -0.16 -0.91 9.75 37.15 0.36 -0.54 16 26 C -0.11 -1.20 3.99 -26.59 -0.11 -1.31 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 29 H 0.04 0.78 5.64 -51.93 -0.29 0.49 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.10 2.59 5.96 -51.93 -0.31 2.28 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.39 6.56 8.27 -40.82 -0.34 6.22 16 34 H 0.11 1.43 8.09 -51.93 -0.42 1.01 16 35 H 0.11 1.32 7.94 -51.93 -0.41 0.91 16 36 H 0.40 3.58 6.98 -40.82 -0.28 3.29 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.05 0.31 6.63 -51.93 -0.34 -0.04 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 1.07 7.89 -51.93 -0.41 0.66 16 43 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 LS Contribution 338.99 15.07 5.11 5.11 Total: -1.00 -30.91 338.99 -7.64 -38.55 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.96 Total: 8.21 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -1.02 Total: -1.49 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.07 Total: -44.97 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.17 Total: -20.80 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.91 -7.64 -38.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358077034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.623 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds