Wall clock time and date at job start Tue Mar 31 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46846 * 2 1 4 4 H 1.08996 * 109.47302 * 305.00156 * 3 2 1 5 5 C 1.50696 * 109.46987 * 185.00048 * 3 2 1 6 6 H 1.08002 * 119.99920 * 240.00154 * 5 3 2 7 7 C 1.37875 * 120.00077 * 60.00294 * 5 3 2 8 8 N 1.31521 * 120.00486 * 180.02562 * 7 5 3 9 9 Si 1.86805 * 119.99980 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.46957 * 269.99849 * 9 7 5 11 11 H 1.48490 * 109.46870 * 30.00015 * 9 7 5 12 12 H 1.48499 * 109.47181 * 150.00416 * 9 7 5 13 13 N 1.46500 * 109.47026 * 65.00121 * 3 2 1 14 14 C 1.34773 * 120.00269 * 275.00222 * 13 3 2 15 15 O 1.21287 * 119.99723 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00155 * 180.02562 * 14 13 3 17 17 H 1.09003 * 109.67082 * 63.28311 * 16 14 13 18 18 C 1.53073 * 109.67086 * 183.78011 * 16 14 13 19 19 C 1.50171 * 109.89098 * 70.83608 * 18 16 14 20 20 O 1.21291 * 118.24163 * 197.56053 * 19 18 16 21 21 N 1.33353 * 123.51124 * 17.57819 * 19 18 16 22 22 C 1.45747 * 124.10382 * 357.75437 * 21 19 18 23 23 H 1.08995 * 109.30239 * 258.98938 * 22 21 19 24 24 C 1.53006 * 109.30002 * 139.40966 * 22 21 19 25 25 C 1.53004 * 109.46694 * 64.99936 * 24 22 21 26 26 C 1.52932 * 110.48134 * 19.11464 * 22 21 19 27 27 H 1.09002 * 109.47355 * 299.99288 * 1 2 3 28 28 H 1.08997 * 109.47562 * 60.00344 * 1 2 3 29 29 H 1.09004 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47454 * 240.00165 * 2 1 3 31 31 H 1.08993 * 109.47606 * 120.00146 * 2 1 3 32 32 H 0.96998 * 120.00497 * 180.02562 * 8 7 5 33 33 H 0.97007 * 119.99751 * 94.99832 * 13 3 2 34 34 H 1.09007 * 109.39610 * 190.96590 * 18 16 14 35 35 H 1.09005 * 109.40080 * 310.78751 * 18 16 14 36 36 H 0.96999 * 117.94475 * 177.77913 * 21 19 18 37 37 H 1.08996 * 109.47089 * 184.99579 * 24 22 21 38 38 H 1.08993 * 109.47173 * 305.00364 * 24 22 21 39 39 H 1.09001 * 109.47211 * 60.00079 * 25 24 22 40 40 H 1.09003 * 109.46885 * 180.02562 * 25 24 22 41 41 H 1.08999 * 109.47405 * 300.00051 * 25 24 22 42 42 H 1.09006 * 109.59901 * 189.46630 * 26 22 21 43 43 H 1.09000 * 109.62126 * 68.97876 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 5.4539 0.8797 -1.3359 9 14 3.0963 0.1090 -2.5701 10 1 2.8756 -1.3271 -2.2635 11 1 1.7876 0.8074 -2.6386 12 1 3.7935 0.2349 -3.8752 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6643 1.3671 15 8 -0.3394 2.6326 0.4342 16 6 0.0366 3.3385 2.6546 17 1 0.6903 4.1908 2.8401 18 6 -1.4154 3.8138 2.5595 19 6 -2.3422 2.6324 2.5817 20 8 -3.4813 2.7893 2.1959 21 7 -1.9799 1.4202 3.0032 22 6 -0.6349 1.0781 3.4485 23 1 -0.1125 0.5546 2.6479 24 6 -0.7247 0.1666 4.6742 25 6 -1.3715 -1.1615 4.2757 26 6 0.1452 2.3415 3.8145 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.8770 0.4820 -2.1129 33 1 2.2719 2.1232 1.9978 34 1 -1.6390 4.4655 3.4042 35 1 -1.5557 4.3652 1.6297 36 1 -2.6536 0.7224 3.0137 37 1 0.2765 -0.0192 5.0629 38 1 -1.3290 0.6490 5.4423 39 1 -0.7672 -1.6440 3.5075 40 1 -1.4359 -1.8107 5.1490 41 1 -2.3727 -0.9759 3.8869 42 1 1.1921 2.0889 3.9828 43 1 -0.2764 2.7834 4.7173 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358077037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:48 Heat of formation + Delta-G solvation = -89.126529 kcal Electronic energy + Delta-G solvation = -24279.103127 eV Core-core repulsion = 20937.571101 eV Total energy + Delta-G solvation = -3341.532026 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.93505 -38.82665 -36.92954 -35.52096 -33.84145 -32.45315 -32.07534 -31.35223 -29.10437 -27.62323 -25.31816 -23.47617 -22.61775 -21.83431 -21.00895 -19.88208 -18.95351 -17.38810 -16.90425 -16.28968 -15.98971 -15.75479 -15.42975 -14.75499 -14.45643 -14.29558 -13.88654 -13.73313 -13.52158 -13.40750 -12.97498 -12.73031 -12.36400 -12.10863 -12.01728 -11.84156 -11.62619 -11.57499 -11.27121 -11.17129 -10.98294 -10.93134 -10.85875 -10.65508 -9.96586 -9.64348 -9.58313 -9.27563 -9.12649 -8.97880 -8.79103 -8.11029 -6.25327 -4.27998 2.83814 3.13599 3.20328 3.32995 3.35836 3.38187 3.81486 4.27918 4.42213 4.46259 4.50424 4.70769 4.92405 5.01802 5.08450 5.11975 5.24337 5.35369 5.46579 5.50907 5.61686 5.69385 5.73744 5.82138 5.88093 5.92512 5.96820 5.98579 6.07432 6.15450 6.59832 6.66267 6.80195 6.86131 6.93919 7.21810 7.25886 7.44637 7.47286 8.09728 8.35732 8.47124 8.71314 8.88542 9.35811 10.86601 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021033 B = 0.005758 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.929298 B = 4861.689205 C = 5091.495612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.243 3.757 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.260 1.260 12 H -0.294 1.294 13 N -0.699 5.699 14 C 0.503 3.497 15 O -0.540 6.540 16 C -0.119 4.119 17 H 0.110 0.890 18 C -0.116 4.116 19 C 0.535 3.465 20 O -0.564 6.564 21 N -0.712 5.712 22 C 0.126 3.874 23 H 0.088 0.912 24 C -0.133 4.133 25 C -0.157 4.157 26 C -0.123 4.123 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.030 0.970 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.267 0.733 33 H 0.394 0.606 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.395 0.605 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.092 0.908 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.320 0.050 14.078 16.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C 0.139 3.861 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.711 3.289 10 H -0.203 1.203 11 H -0.185 1.185 12 H -0.222 1.222 13 N -0.347 5.347 14 C 0.287 3.713 15 O -0.419 6.419 16 C -0.140 4.140 17 H 0.128 0.872 18 C -0.156 4.156 19 C 0.322 3.678 20 O -0.443 6.443 21 N -0.365 5.365 22 C 0.021 3.979 23 H 0.105 0.895 24 C -0.171 4.171 25 C -0.214 4.214 26 C -0.161 4.161 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.227 0.773 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.231 0.769 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.110 0.890 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.101 0.234 13.062 16.513 hybrid contribution -0.107 -0.855 -0.423 0.960 sum -10.209 -0.621 12.639 16.258 Atomic orbital electron populations 1.22003 0.96975 0.99044 1.02717 1.22279 0.94241 1.00007 1.01050 1.19137 0.95586 0.88428 0.82913 0.93391 1.21035 0.88593 1.39836 1.07838 0.90187 1.24826 0.94831 0.95135 0.97640 1.69862 1.08673 1.44473 1.29820 0.86923 0.81002 0.79931 0.80999 1.20290 1.18496 1.22156 1.46155 1.14703 1.55937 1.17901 1.20247 0.82726 0.79410 0.88903 1.90722 1.51371 1.59400 1.40358 1.21540 0.97958 0.99968 0.94577 0.87206 1.21479 0.91921 0.96455 1.05760 1.19949 0.88226 0.84287 0.75312 1.90723 1.21236 1.84325 1.47996 1.45540 1.12518 1.11996 1.66462 1.21237 0.83385 0.95929 0.97310 0.89454 1.21898 1.02348 0.95791 0.97041 1.21810 1.00786 0.96983 1.01869 1.21944 1.01894 0.94546 0.97681 0.92155 0.92933 0.95134 0.92841 0.92386 0.92264 0.77292 0.88073 0.87123 0.76850 0.90129 0.91288 0.92021 0.92270 0.92864 0.88972 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.51 37.16 0.32 -2.62 16 2 C -0.14 -2.90 5.11 -26.73 -0.14 -3.04 16 3 C 0.24 5.45 1.83 -69.08 -0.13 5.32 16 4 H 0.05 1.23 6.64 -51.93 -0.34 0.88 16 5 C -0.54 -13.83 9.31 -34.44 -0.32 -14.15 16 6 H 0.08 2.17 7.98 -52.49 -0.42 1.75 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -25.82 13.96 55.43 0.77 -25.05 16 9 Si 0.88 21.46 24.41 -169.99 -4.15 17.31 16 10 H -0.28 -6.52 6.83 56.52 0.39 -6.13 16 11 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 N -0.70 -12.38 4.90 -54.93 -0.27 -12.65 16 14 C 0.50 8.42 4.29 -10.99 -0.05 8.37 16 15 O -0.54 -11.24 12.42 5.55 0.07 -11.17 16 16 C -0.12 -1.39 3.09 -91.56 -0.28 -1.67 16 17 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 18 C -0.12 -1.47 5.14 -28.10 -0.14 -1.61 16 19 C 0.53 8.17 6.88 -11.87 -0.08 8.09 16 20 O -0.56 -10.87 17.78 5.55 0.10 -10.77 16 21 N -0.71 -9.02 5.12 -54.85 -0.28 -9.30 16 22 C 0.13 1.34 2.38 -68.37 -0.16 1.18 16 23 H 0.09 1.14 5.29 -51.93 -0.27 0.86 16 24 C -0.13 -1.07 5.57 -26.73 -0.15 -1.22 16 25 C -0.16 -1.30 9.76 37.16 0.36 -0.94 16 26 C -0.12 -1.11 4.74 -26.59 -0.13 -1.24 16 27 H 0.06 1.10 3.38 -51.93 -0.18 0.93 16 28 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.22 3.21 -51.93 -0.17 1.05 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 33 H 0.39 6.00 7.97 -40.82 -0.33 5.68 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.11 1.60 7.68 -51.93 -0.40 1.21 16 36 H 0.40 4.81 7.04 -40.82 -0.29 4.53 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.05 0.45 6.67 -51.93 -0.35 0.10 16 42 H 0.09 0.71 7.68 -51.93 -0.40 0.31 16 43 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 LS Contribution 324.07 15.07 4.88 4.88 Total: -1.00 -33.19 324.07 -6.40 -39.59 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.53 Total: 8.61 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -1.00 Total: -1.46 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.22 Total: -47.00 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.17 Total: -21.94 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.15 Total: 17.31 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.19 -6.40 -39.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358077037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.536 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds