Wall clock time and date at job start Tue Mar 31 2020 06:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46954 * 2 1 4 4 H 1.09002 * 109.56736 * 180.90759 * 3 2 1 5 5 C 1.50438 * 109.66773 * 60.60995 * 3 2 1 6 6 O 1.21277 * 118.49278 * 47.38540 * 5 3 2 7 7 N 1.33328 * 123.00132 * 227.37067 * 5 3 2 8 8 C 1.46504 * 117.66379 * 184.35291 * 7 5 3 9 9 C 1.53001 * 109.47163 * 270.04622 * 8 7 5 10 10 C 1.45648 * 124.63359 * 4.40047 * 7 5 3 11 11 C 1.52988 * 110.73842 * 338.02978 * 10 7 5 12 12 N 1.47047 * 109.56834 * 301.14000 * 3 2 1 13 13 C 1.34776 * 121.35298 * 342.70237 * 12 3 2 14 14 O 1.21285 * 119.99867 * 354.10075 * 13 12 3 15 15 C 1.50697 * 120.00169 * 174.09541 * 13 12 3 16 16 C 1.52994 * 109.47219 * 180.02562 * 15 13 12 17 17 C 1.50706 * 109.47275 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99790 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00235 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99833 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00229 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46968 * 60.00094 * 21 19 17 23 23 H 1.48501 * 109.47151 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47221 * 300.00341 * 21 19 17 25 25 H 1.08993 * 109.47140 * 292.87454 * 1 2 3 26 26 H 1.08997 * 109.46854 * 52.87835 * 1 2 3 27 27 H 1.09000 * 109.47255 * 172.87894 * 1 2 3 28 28 H 1.09000 * 109.47061 * 239.99446 * 2 1 3 29 29 H 1.09000 * 109.46774 * 119.99775 * 2 1 3 30 30 H 1.08995 * 109.47059 * 30.04426 * 8 7 5 31 31 H 1.09002 * 109.47463 * 150.04506 * 8 7 5 32 32 H 1.09002 * 109.47025 * 59.99617 * 9 8 7 33 33 H 1.08996 * 109.47343 * 179.97438 * 9 8 7 34 34 H 1.08996 * 109.47151 * 300.00380 * 9 8 7 35 35 H 1.08997 * 109.21971 * 217.71500 * 10 7 5 36 36 H 1.09000 * 109.21493 * 98.33961 * 10 7 5 37 37 H 1.08996 * 109.71932 * 166.41901 * 11 10 7 38 38 H 1.09004 * 109.71610 * 287.03095 * 11 10 7 39 39 H 1.09003 * 109.47249 * 300.00144 * 15 13 12 40 40 H 1.09004 * 109.46924 * 60.00378 * 15 13 12 41 41 H 1.08994 * 109.47367 * 300.00186 * 16 15 13 42 42 H 1.08997 * 109.47230 * 60.00532 * 16 15 13 43 43 H 0.97003 * 119.99901 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4444 -0.0163 5 6 1.5533 2.1515 1.2343 6 8 1.6716 1.5955 2.3056 7 7 0.9981 3.3634 1.2043 8 6 0.6545 3.9860 2.4851 9 6 -0.7745 3.6004 2.8726 10 6 0.7084 4.1112 -0.0115 11 6 1.5758 3.6175 -1.1709 12 7 1.5286 2.1456 -1.1859 13 6 1.0363 1.4705 -2.2434 14 8 1.1063 0.2601 -2.2762 15 6 0.3988 2.2196 -3.3852 16 6 -0.0735 1.2248 -4.4472 17 6 -0.7105 1.9739 -5.5893 18 1 -0.7725 3.0517 -5.5603 19 6 -1.2149 1.2832 -6.6707 20 7 -1.1407 -0.0295 -6.7053 21 14 -2.0051 2.2117 -8.0860 22 1 -1.0124 3.1399 -8.6845 23 1 -2.4646 1.2460 -9.1163 24 1 -3.1669 2.9872 -7.5820 25 1 -0.3633 0.3994 0.9468 26 1 -0.3633 0.6202 -0.8194 27 1 -0.3634 -1.0197 -0.1274 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3453 3.6403 3.2541 31 1 0.7261 5.0698 2.3932 32 1 -0.8461 2.5166 2.9646 33 1 -1.0301 4.0632 3.8257 34 1 -1.4653 3.9460 2.1036 35 1 0.9086 5.1686 0.1614 36 1 -0.3428 3.9828 -0.2697 37 1 1.1883 4.0075 -2.1121 38 1 2.6036 3.9518 -1.0296 39 1 -0.4545 2.7881 -3.0153 40 1 1.1272 2.9015 -3.8240 41 1 0.7794 0.6559 -4.8171 42 1 -0.8021 0.5432 -4.0082 43 1 -1.4959 -0.5154 -7.4660 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360663588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:25 Heat of formation + Delta-G solvation = -55.314451 kcal Electronic energy + Delta-G solvation = -23642.776325 eV Core-core repulsion = 20302.710501 eV Total energy + Delta-G solvation = -3340.065824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.20933 -39.21959 -36.67993 -35.45027 -33.82974 -32.86828 -31.32735 -30.61771 -29.19442 -27.24998 -25.39482 -24.40960 -23.33274 -22.05605 -21.29161 -19.50274 -18.07599 -17.54136 -16.97182 -16.38741 -16.18563 -15.63363 -15.34003 -15.06265 -14.45063 -14.26073 -13.92742 -13.71255 -13.46094 -13.35839 -12.91058 -12.57485 -12.48925 -12.24946 -12.18979 -11.96156 -11.79323 -11.31098 -11.22662 -11.19211 -10.95739 -10.90262 -10.70520 -10.64971 -10.12262 -10.00382 -9.61244 -9.16632 -8.96332 -8.60732 -8.53062 -8.35107 -5.99606 -4.04460 2.50153 2.66935 3.01409 3.14473 3.31485 3.36983 3.38004 4.27011 4.43041 4.50816 4.74017 4.85942 4.94977 5.01191 5.08645 5.14998 5.21129 5.31121 5.35515 5.38180 5.49549 5.57639 5.62770 5.74169 5.88480 5.98563 6.00917 6.08856 6.11015 6.20732 6.28413 6.40833 6.62247 6.76547 6.79516 7.24456 7.58889 7.69379 7.80626 8.01044 8.02341 8.33577 8.64572 9.03397 9.59390 11.11141 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025340 B = 0.004230 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.723415 B = 6618.153169 C = 7124.099650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.125 4.125 3 C 0.139 3.861 4 H 0.097 0.903 5 C 0.517 3.483 6 O -0.543 6.543 7 N -0.603 5.603 8 C 0.104 3.896 9 C -0.166 4.166 10 C 0.097 3.903 11 C 0.095 3.905 12 N -0.628 5.628 13 C 0.520 3.480 14 O -0.512 6.512 15 C -0.129 4.129 16 C 0.038 3.962 17 C -0.529 4.529 18 H 0.055 0.945 19 C 0.060 3.940 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.035 0.965 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.121 0.879 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.035 11.015 16.054 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C 0.033 3.967 4 H 0.114 0.886 5 C 0.304 3.696 6 O -0.420 6.420 7 N -0.336 5.336 8 C -0.019 4.019 9 C -0.225 4.225 10 C -0.027 4.027 11 C -0.029 4.029 12 N -0.367 5.367 13 C 0.311 3.689 14 O -0.387 6.387 15 C -0.169 4.169 16 C 0.001 3.999 17 C -0.567 4.567 18 H 0.073 0.927 19 C -0.142 4.142 20 N -0.527 5.527 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.139 0.861 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.131 0.869 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.080 9.864 16.436 19.831 hybrid contribution -0.527 0.774 -0.763 1.208 sum 4.553 10.638 15.674 19.482 Atomic orbital electron populations 1.21775 0.95285 1.02277 1.00207 1.22054 0.97363 0.92152 1.04627 1.21371 0.99205 0.94420 0.81751 0.88561 1.20443 0.76993 0.80818 0.91314 1.90695 1.56826 1.63975 1.30489 1.47309 1.61160 1.17647 1.07489 1.21521 0.97190 0.97181 0.86007 1.22085 0.96371 1.02700 1.01308 1.21855 1.00585 0.96055 0.84194 1.22056 1.00540 0.80630 0.99696 1.48485 1.64823 1.06136 1.17228 1.21484 0.76521 0.88450 0.82422 1.90607 1.55684 1.14276 1.78116 1.21942 0.99689 1.00910 0.94377 1.18898 0.96995 0.93107 0.90928 1.21152 1.38982 0.93062 1.03522 0.92708 1.25009 0.96068 0.94806 0.98361 1.69983 1.45802 1.06143 1.30766 0.86667 0.79716 0.79548 0.82078 1.20242 1.21279 1.20272 0.94609 0.92274 0.92518 0.86116 0.91639 0.89788 0.90609 0.92089 0.91737 0.92545 0.89473 0.90985 0.86911 0.90462 0.90265 0.90167 0.95751 0.95782 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.59 37.16 0.32 -2.00 16 2 C -0.12 -1.97 4.92 -26.73 -0.13 -2.11 16 3 C 0.14 1.95 3.36 -68.91 -0.23 1.72 16 4 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 5 C 0.52 7.15 5.99 -11.76 -0.07 7.08 16 6 O -0.54 -8.96 15.63 5.56 0.09 -8.88 16 7 N -0.60 -6.56 2.80 -174.90 -0.49 -7.05 16 8 C 0.10 0.95 5.88 -4.04 -0.02 0.92 16 9 C -0.17 -1.54 10.23 37.16 0.38 -1.16 16 10 C 0.10 0.82 6.58 -4.51 -0.03 0.79 16 11 C 0.09 0.89 6.44 -3.63 -0.02 0.87 16 12 N -0.63 -8.62 2.78 -166.55 -0.46 -9.08 16 13 C 0.52 9.22 5.81 -10.99 -0.06 9.16 16 14 O -0.51 -10.82 11.03 5.55 0.06 -10.76 16 15 C -0.13 -2.41 4.05 -27.89 -0.11 -2.52 16 16 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 17 C -0.53 -14.40 9.11 -34.44 -0.31 -14.71 16 18 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 21 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H 0.03 0.58 7.51 -51.93 -0.39 0.19 16 26 H 0.06 1.09 5.24 -51.93 -0.27 0.81 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.12 2.14 5.62 -52.26 -0.29 1.85 16 29 H 0.07 1.00 7.86 -51.93 -0.41 0.59 16 30 H 0.08 0.87 7.23 -51.93 -0.38 0.50 16 31 H 0.08 0.48 7.81 -51.93 -0.41 0.08 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.47 7.84 -51.93 -0.41 0.06 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.11 0.96 6.05 -51.93 -0.31 0.65 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 1.34 8.08 -51.93 -0.42 0.93 16 40 H 0.08 1.34 7.59 -51.93 -0.39 0.94 16 41 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 337.14 15.07 5.08 5.08 Total: -1.00 -33.60 337.14 -7.55 -41.14 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.02 Total: -0.97 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -0.52 Total: 0.47 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: -0.22 Total: -42.16 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: 0.15 Total: -19.64 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.60 -7.55 -41.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360663588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.170 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds