Wall clock time and date at job start Tue Mar 31 2020 06:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47234 * 2 1 4 4 H 1.09004 * 109.56477 * 55.00085 * 3 2 1 5 5 C 1.50431 * 109.56795 * 175.23805 * 3 2 1 6 6 O 1.21286 * 118.49108 * 287.11509 * 5 3 2 7 7 N 1.33621 * 122.84853 * 107.09009 * 5 3 2 8 8 C 1.46503 * 117.64253 * 184.33919 * 7 5 3 9 9 C 1.53006 * 109.46882 * 270.06848 * 8 7 5 10 10 C 1.45648 * 124.65155 * 4.41243 * 7 5 3 11 11 C 1.52989 * 110.77283 * 338.04560 * 10 7 5 12 12 N 1.47048 * 109.56752 * 294.76566 * 3 2 1 13 13 C 1.34782 * 121.34937 * 102.93702 * 12 3 2 14 14 O 1.21279 * 120.00370 * 359.97438 * 13 12 3 15 15 C 1.50708 * 119.99594 * 180.02562 * 13 12 3 16 16 C 1.53000 * 109.46986 * 179.97438 * 15 13 12 17 17 C 1.50695 * 109.47150 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99989 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00175 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00057 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00097 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47377 * 89.99708 * 21 19 17 23 23 H 1.48500 * 109.47015 * 209.99709 * 21 19 17 24 24 H 1.48499 * 109.47039 * 329.99471 * 21 19 17 25 25 H 1.09003 * 109.47743 * 59.99455 * 1 2 3 26 26 H 1.09002 * 109.47112 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47389 * 299.99793 * 1 2 3 28 28 H 1.09007 * 109.46945 * 240.00502 * 2 1 3 29 29 H 1.08995 * 109.47339 * 119.99800 * 2 1 3 30 30 H 1.08994 * 109.47046 * 30.06895 * 8 7 5 31 31 H 1.08995 * 109.46976 * 150.06878 * 8 7 5 32 32 H 1.08994 * 109.47177 * 59.99681 * 9 8 7 33 33 H 1.08996 * 109.47079 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47052 * 300.00141 * 9 8 7 35 35 H 1.09005 * 109.21561 * 217.71260 * 10 7 5 36 36 H 1.09005 * 109.21691 * 98.38042 * 10 7 5 37 37 H 1.09000 * 109.72216 * 287.05223 * 11 10 7 38 38 H 1.09005 * 109.71669 * 166.39556 * 11 10 7 39 39 H 1.09003 * 109.46780 * 299.99714 * 15 13 12 40 40 H 1.08999 * 109.47240 * 59.99480 * 15 13 12 41 41 H 1.09000 * 109.46808 * 299.99916 * 16 15 13 42 42 H 1.09003 * 109.47091 * 59.99491 * 16 15 13 43 43 H 0.96998 * 120.00527 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6063 1.9831 0.8414 5 6 3.5397 1.4467 0.1177 6 8 4.0369 1.1629 1.1869 7 7 4.3460 1.7488 -0.9041 8 6 5.7900 1.6231 -0.6906 9 6 6.3454 2.9494 -0.1676 10 6 3.8915 2.1952 -2.2138 11 6 2.4425 1.7701 -2.4592 12 7 1.6569 2.1004 -1.2581 13 6 0.6289 2.9705 -1.3098 14 8 -0.0016 3.2246 -0.3054 15 6 0.2622 3.6268 -2.6159 16 6 -0.9301 4.5611 -2.4001 17 6 -1.2964 5.2178 -3.7060 18 1 -0.7346 4.9919 -4.6004 19 6 -2.3479 6.1080 -3.7589 20 7 -3.0316 6.3836 -2.6698 21 14 -2.8015 6.9227 -5.3776 22 1 -3.7991 6.0853 -6.0908 23 1 -3.3808 8.2639 -5.1114 24 1 -1.5851 7.0667 -6.2172 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 5.9823 0.8360 0.0383 31 1 6.2761 1.3721 -1.6333 32 1 5.8592 3.2005 0.7750 33 1 7.4198 2.8562 -0.0091 34 1 6.1530 3.7366 -0.8965 35 1 4.5287 1.7584 -2.9828 36 1 3.9604 3.2818 -2.2663 37 1 2.4001 0.6965 -2.6427 38 1 2.0424 2.3070 -3.3194 39 1 1.1120 4.2010 -2.9852 40 1 -0.0036 2.8615 -3.3451 41 1 -1.7796 3.9865 -2.0311 42 1 -0.6646 5.3264 -1.6708 43 1 -3.7716 7.0096 -2.7070 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360663589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:28 Heat of formation + Delta-G solvation = -78.258136 kcal Electronic energy + Delta-G solvation = -23261.066135 eV Core-core repulsion = 19920.005398 eV Total energy + Delta-G solvation = -3341.060737 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.05394 -39.04782 -36.61491 -35.83649 -33.65997 -33.04986 -31.35370 -30.74842 -29.38423 -27.33720 -25.45389 -24.17523 -23.45825 -22.13811 -21.30582 -19.48139 -17.97410 -17.45746 -17.35794 -16.41568 -16.18058 -15.67541 -15.11456 -14.98194 -14.50248 -14.25431 -14.08897 -13.89105 -13.72547 -13.18807 -12.96499 -12.63946 -12.26634 -12.23466 -12.15138 -12.09262 -11.98312 -11.74880 -11.31747 -11.20275 -11.13193 -10.97829 -10.93804 -10.62903 -10.12823 -10.02491 -9.68497 -9.24463 -9.06409 -8.98600 -8.56480 -8.35373 -5.99461 -4.04374 2.43624 2.64494 3.03189 3.11134 3.30697 3.37272 3.39176 4.20928 4.43178 4.49494 4.73474 4.82225 4.91344 4.92960 5.02120 5.08348 5.17862 5.23404 5.30761 5.35703 5.37675 5.48293 5.55506 5.65957 5.72258 5.78538 5.92652 5.99163 6.05863 6.08791 6.11446 6.18967 6.37515 6.45081 6.79218 7.20692 7.56417 7.69901 7.80670 7.95199 8.02617 8.32970 8.60673 9.03766 9.59535 11.11411 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021994 B = 0.004142 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.767828 B = 6758.674979 C = 7446.258410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C 0.131 3.869 4 H 0.127 0.873 5 C 0.519 3.481 6 O -0.544 6.544 7 N -0.603 5.603 8 C 0.103 3.897 9 C -0.167 4.167 10 C 0.098 3.902 11 C 0.094 3.906 12 N -0.625 5.625 13 C 0.518 3.482 14 O -0.522 6.522 15 C -0.127 4.127 16 C 0.037 3.963 17 C -0.528 4.528 18 H 0.056 0.944 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.024 0.976 42 H 0.023 0.977 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.822 -12.774 -0.519 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C 0.024 3.976 4 H 0.144 0.856 5 C 0.306 3.694 6 O -0.421 6.421 7 N -0.336 5.336 8 C -0.019 4.019 9 C -0.225 4.225 10 C -0.026 4.026 11 C -0.030 4.030 12 N -0.363 5.363 13 C 0.309 3.691 14 O -0.395 6.395 15 C -0.167 4.167 16 C 0.000 4.000 17 C -0.566 4.566 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.527 5.527 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.131 0.869 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.527 -12.632 0.660 20.812 hybrid contribution -0.176 0.558 -1.041 1.194 sum 16.351 -12.074 -0.381 20.330 Atomic orbital electron populations 1.21680 0.93935 1.01405 1.03210 1.21720 0.97643 0.93709 1.02716 1.21330 0.89695 0.96139 0.90418 0.85551 1.20421 0.89488 0.76032 0.83455 1.90711 1.75884 1.49168 1.26304 1.47370 1.07027 1.66517 1.12669 1.21533 0.79755 0.98918 1.01718 1.22092 1.00927 0.97450 1.02053 1.21862 0.96040 1.00683 0.84036 1.22050 0.89535 1.01925 0.89508 1.48546 1.34015 1.45523 1.08264 1.21633 0.77740 0.77070 0.92697 1.90688 1.50524 1.61153 1.37178 1.21908 1.02691 1.00025 0.92082 1.18912 0.90743 0.93370 0.97023 1.21185 1.15272 1.25391 0.94790 0.92613 1.25015 0.96308 0.96685 0.96276 1.69989 1.20522 1.34827 1.27363 0.86601 0.78650 0.78868 0.83879 1.20661 1.21224 1.19889 0.92269 0.92612 0.92001 0.91692 0.90312 0.89765 0.90537 0.92087 0.91680 0.92512 0.89420 0.90941 0.90460 0.86896 0.90182 0.90076 0.95758 0.95820 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.67 37.15 0.36 -1.51 16 2 C -0.12 -1.42 5.50 -26.73 -0.15 -1.57 16 3 C 0.13 1.84 2.45 -68.91 -0.17 1.67 16 4 H 0.13 2.10 7.22 -51.93 -0.38 1.73 16 5 C 0.52 7.16 6.83 -11.63 -0.08 7.08 16 6 O -0.54 -8.99 16.27 5.55 0.09 -8.90 16 7 N -0.60 -6.50 2.81 -174.81 -0.49 -6.99 16 8 C 0.10 0.93 5.89 -4.04 -0.02 0.91 16 9 C -0.17 -1.52 10.23 37.16 0.38 -1.14 16 10 C 0.10 0.81 6.57 -4.51 -0.03 0.78 16 11 C 0.09 0.88 6.31 -3.63 -0.02 0.86 16 12 N -0.63 -8.65 2.27 -166.54 -0.38 -9.03 16 13 C 0.52 9.47 6.78 -10.98 -0.07 9.39 16 14 O -0.52 -11.77 15.54 5.56 0.09 -11.69 16 15 C -0.13 -2.41 4.01 -27.88 -0.11 -2.52 16 16 C 0.04 0.96 4.26 -27.89 -0.12 0.84 16 17 C -0.53 -14.47 9.11 -34.44 -0.31 -14.79 16 18 H 0.06 1.43 7.74 -52.48 -0.41 1.02 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 21 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H 0.06 0.86 7.07 -51.93 -0.37 0.50 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.68 7.35 -51.93 -0.38 0.29 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 0.86 7.24 -51.93 -0.38 0.48 16 31 H 0.08 0.47 7.80 -51.93 -0.41 0.07 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.46 7.85 -51.93 -0.41 0.05 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.61 7.40 -51.93 -0.38 0.22 16 38 H 0.11 0.97 6.03 -51.93 -0.31 0.66 16 39 H 0.08 1.36 7.87 -51.93 -0.41 0.95 16 40 H 0.08 1.37 7.83 -51.93 -0.41 0.96 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 347.02 15.07 5.23 5.23 Total: -1.00 -34.54 347.02 -7.36 -41.90 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -7.17 Total: -2.07 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -0.45 Total: 1.60 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -0.13 Total: -42.22 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.18 Total: -20.58 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.54 -7.36 -41.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360663589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.356 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds