Wall clock time and date at job start Tue Mar 31 2020 05:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47141 * 2 1 4 4 C 1.53001 * 109.47201 * 239.99732 * 2 1 3 5 5 O 1.45203 * 109.46795 * 119.99664 * 2 1 3 6 6 C 1.34635 * 116.99949 * 60.00220 * 5 2 1 7 7 O 1.21513 * 120.00238 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00127 * 179.97438 * 6 5 2 9 9 C 1.46674 * 125.33651 * 179.97438 * 8 6 5 10 10 C 1.53714 * 107.93005 * 179.30609 * 9 8 6 11 11 H 1.08998 * 112.83064 * 219.23607 * 10 9 8 12 12 C 1.54265 * 109.10245 * 92.94402 * 10 9 8 13 13 C 1.53729 * 104.61058 * 222.21569 * 12 10 9 14 14 N 1.46657 * 107.82762 * 17.08354 * 13 12 10 15 15 C 1.36935 * 125.26676 * 180.84500 * 14 13 12 16 16 H 1.08001 * 119.99666 * 168.95131 * 15 14 13 17 17 C 1.38806 * 119.99920 * 348.95281 * 15 14 13 18 18 N 1.31623 * 120.00004 * 165.52565 * 17 15 14 19 19 Si 1.86799 * 120.00285 * 345.52594 * 17 15 14 20 20 H 1.48496 * 109.46981 * 185.24335 * 19 17 15 21 21 H 1.48501 * 109.46914 * 305.24979 * 19 17 15 22 22 H 1.48507 * 109.46663 * 65.24505 * 19 17 15 23 23 C 1.46704 * 109.46875 * 1.11588 * 14 13 12 24 24 H 1.08997 * 111.99753 * 218.43647 * 23 14 13 25 25 C 1.46767 * 125.33657 * 0.02562 * 8 6 5 26 26 H 1.08997 * 109.47369 * 299.99975 * 1 2 3 27 27 H 1.09004 * 109.47181 * 60.00162 * 1 2 3 28 28 H 1.09001 * 109.47534 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47438 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47408 * 299.99853 * 3 2 1 31 31 H 1.09001 * 109.47275 * 60.00183 * 3 2 1 32 32 H 1.08994 * 109.47119 * 300.00198 * 4 2 1 33 33 H 1.09000 * 109.46840 * 60.00457 * 4 2 1 34 34 H 1.09003 * 109.46964 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.77019 * 59.69305 * 9 8 6 36 36 H 1.08995 * 109.79343 * 298.93776 * 9 8 6 37 37 H 1.09007 * 110.40664 * 103.43201 * 12 10 9 38 38 H 1.09000 * 110.41202 * 340.99716 * 12 10 9 39 39 H 1.09004 * 109.79435 * 257.49981 * 13 12 10 40 40 H 1.08998 * 109.79573 * 136.67028 * 13 12 10 41 41 H 0.96998 * 119.99602 * 354.91764 * 18 17 15 42 42 H 1.09002 * 110.02618 * 317.70276 * 25 8 6 43 43 H 1.09001 * 110.02734 * 79.11652 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6521 -1.9722 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0679 -2.6656 2.4168 9 6 1.7448 -4.0681 2.6999 10 6 2.4363 -4.4566 4.0166 11 1 2.8476 -5.4658 3.9965 12 6 1.4567 -4.2317 5.1868 13 6 2.3122 -3.5890 6.2906 14 7 3.5414 -3.0848 5.6697 15 6 4.5635 -2.4601 6.3331 16 1 5.5034 -2.2819 5.8317 17 6 4.3918 -2.0561 7.6499 18 7 5.4365 -1.7214 8.3772 19 14 2.6780 -1.9874 8.3899 20 1 2.7513 -1.4089 9.7556 21 1 1.8051 -1.1393 7.5391 22 1 2.1152 -3.3598 8.4632 23 6 3.5036 -3.3473 4.2268 24 1 4.4798 -3.6381 3.8391 25 6 2.9140 -2.1355 3.4925 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7209 -1.2494 35 1 2.1097 -4.7010 1.8909 36 1 0.6659 -4.1850 2.8015 37 1 1.0476 -5.1827 5.5281 38 1 0.6544 -3.5575 4.8868 39 1 2.5595 -4.3342 7.0468 40 1 1.7653 -2.7650 6.7489 41 1 6.3313 -1.8270 8.0181 42 1 3.7151 -1.5276 3.0720 43 1 2.3140 -1.5392 4.1799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366397331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:20 Heat of formation + Delta-G solvation = -61.245468 kcal Electronic energy + Delta-G solvation = -23698.922843 eV Core-core repulsion = 20358.599830 eV Total energy + Delta-G solvation = -3340.323012 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.03931 -40.81749 -38.18862 -36.62919 -35.12563 -34.37290 -32.40763 -30.80482 -28.99949 -28.36848 -28.31274 -25.68675 -25.22399 -22.88650 -22.15563 -20.89080 -20.41543 -19.65800 -18.95070 -17.77633 -17.51410 -17.07288 -16.73550 -16.04670 -15.72976 -15.42995 -15.09244 -14.87883 -14.71213 -14.33703 -14.14334 -13.91221 -13.56596 -13.36859 -13.22094 -13.11551 -12.92565 -12.88944 -12.88133 -12.50232 -12.40526 -12.31307 -12.21851 -11.70047 -11.56977 -11.40586 -11.39007 -11.16219 -10.99182 -10.67008 -9.79265 -9.13377 -8.63540 -5.48674 1.08582 1.41468 1.50802 1.68678 1.72469 2.55229 2.74940 3.13367 3.23994 3.51546 3.61972 3.73877 3.78645 3.83337 3.93413 4.09684 4.19558 4.34456 4.38310 4.49665 4.55175 4.60601 4.62524 4.73424 4.74577 4.80898 4.82790 4.85426 4.89159 4.91652 5.02969 5.06013 5.16330 5.20604 5.27098 5.32544 5.35323 5.43788 5.59673 6.11951 6.36377 6.83233 7.21610 7.44547 8.06746 8.89284 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022524 B = 0.004932 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.828025 B = 5676.281197 C = 6196.374382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.119 3.881 3 C -0.137 4.137 4 C -0.176 4.176 5 O -0.375 6.375 6 C 0.663 3.337 7 O -0.587 6.587 8 N -0.599 5.599 9 C 0.138 3.862 10 C -0.095 4.095 11 H 0.133 0.867 12 C -0.113 4.113 13 C 0.099 3.901 14 N -0.613 5.613 15 C -0.309 4.309 16 H 0.050 0.950 17 C -0.074 4.074 18 N -0.965 5.965 19 Si 1.106 2.894 20 H -0.316 1.316 21 H -0.291 1.291 22 H -0.246 1.246 23 C 0.150 3.850 24 H 0.072 0.928 25 C 0.103 3.897 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.019 0.981 41 H 0.249 0.751 42 H 0.058 0.942 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.357 -1.350 -17.514 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.083 3.917 3 C -0.194 4.194 4 C -0.233 4.233 5 O -0.290 6.290 6 C 0.418 3.582 7 O -0.478 6.478 8 N -0.340 5.340 9 C 0.017 3.983 10 C -0.114 4.114 11 H 0.151 0.849 12 C -0.150 4.150 13 C -0.025 4.025 14 N -0.338 5.338 15 C -0.438 4.438 16 H 0.068 0.932 17 C -0.267 4.267 18 N -0.609 5.609 19 Si 0.935 3.065 20 H -0.246 1.246 21 H -0.220 1.220 22 H -0.171 1.171 23 C 0.042 3.958 24 H 0.090 0.910 25 C -0.023 4.023 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.367 -0.969 -16.486 20.632 hybrid contribution 1.589 0.159 -1.061 1.917 sum -10.778 -0.810 -17.547 20.609 Atomic orbital electron populations 1.22456 0.93611 1.03798 1.03540 1.22496 0.94953 0.92643 0.81582 1.21895 1.02206 0.91020 1.04270 1.22453 1.01403 1.02324 0.97166 1.86375 1.71649 1.23253 1.47702 1.17619 0.78672 0.80732 0.81130 1.90852 1.42493 1.71002 1.43472 1.47075 1.52556 1.13465 1.20880 1.21881 1.00770 0.78704 0.96900 1.22965 0.95053 1.00204 0.93176 0.84870 1.22462 0.96706 1.02254 0.93618 1.22043 0.87255 0.95959 0.97269 1.44637 1.18497 1.68017 1.02619 1.20059 0.92129 1.35026 0.96579 0.93193 1.27000 1.07800 0.97970 0.93904 1.70990 0.98536 1.52770 1.38597 0.83427 0.71611 0.78164 0.73257 1.24606 1.21974 1.17074 1.21753 0.97673 0.92501 0.83876 0.90978 1.22524 0.93103 0.98581 0.88061 0.92550 0.88498 0.91690 0.91720 0.87235 0.91863 0.91680 0.88532 0.92399 0.89849 0.89794 0.87151 0.90830 0.93786 0.96382 0.94210 0.92304 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.88 8.37 71.98 0.60 -3.27 16 2 C 0.12 2.81 1.13 -10.80 -0.01 2.80 16 3 C -0.14 -2.46 8.85 71.98 0.64 -1.82 16 4 C -0.18 -3.80 8.37 71.98 0.60 -3.20 16 5 O -0.37 -11.79 9.45 -55.44 -0.52 -12.31 16 6 C 0.66 21.77 7.91 129.79 1.03 22.79 16 7 O -0.59 -19.89 12.19 19.80 0.24 -19.64 16 8 N -0.60 -18.92 3.31 -948.72 -3.14 -22.06 16 9 C 0.14 3.49 6.19 86.59 0.54 4.02 16 10 C -0.09 -2.50 4.13 -9.31 -0.04 -2.54 16 11 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 12 C -0.11 -3.08 6.11 31.27 0.19 -2.89 16 13 C 0.10 3.85 4.61 86.59 0.40 4.25 16 14 N -0.61 -27.85 2.84 -670.39 -1.91 -29.76 16 15 C -0.31 -17.32 10.53 84.03 0.88 -16.43 16 16 H 0.05 3.03 8.06 -2.91 -0.02 3.00 16 17 C -0.07 -4.31 5.49 84.86 0.47 -3.84 16 18 N -0.96 -61.55 13.70 21.65 0.30 -61.25 16 19 Si 1.11 53.16 24.51 68.60 1.68 54.84 16 20 H -0.32 -15.86 7.11 99.48 0.71 -15.16 16 21 H -0.29 -13.48 6.85 99.48 0.68 -12.80 16 22 H -0.25 -10.18 5.42 99.48 0.54 -9.64 16 23 C 0.15 5.46 4.03 45.92 0.18 5.64 16 24 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 25 C 0.10 3.71 6.33 86.49 0.55 4.25 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.06 1.74 5.88 -2.39 -0.01 1.73 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.72 5.88 -2.39 -0.01 1.71 16 33 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.08 1.94 7.62 -2.39 -0.02 1.92 16 37 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.07 1.96 7.57 -2.39 -0.02 1.94 16 39 H 0.04 1.77 6.77 -2.38 -0.02 1.76 16 40 H 0.02 0.78 3.73 -2.39 -0.01 0.77 16 41 H 0.25 15.91 8.73 -92.71 -0.81 15.10 16 42 H 0.06 2.21 8.12 -2.39 -0.02 2.19 16 43 H 0.05 2.01 8.00 -2.39 -0.02 1.99 16 Total: -1.00 -70.72 327.37 3.43 -67.30 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.75 Total: 13.11 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 6.03 Total: 9.77 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -4.75 Total: -113.07 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.28 Total: -31.95 kcal Atomic # 14 Polarization: 53.16 SS G_CDS: 1.68 Total: 54.84 kcal Total: -70.72 3.43 -67.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366397331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.051 kcal (2) G-P(sol) polarization free energy of solvation -70.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds