Wall clock time and date at job start Tue Mar 31 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 H 1.09003 * 109.46586 * 55.00441 * 3 2 1 5 5 C 1.50703 * 109.46942 * 174.99963 * 3 2 1 6 6 H 1.07997 * 119.99734 * 120.00381 * 5 3 2 7 7 C 1.37876 * 119.99872 * 299.99798 * 5 3 2 8 8 N 1.31510 * 120.00499 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99869 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47025 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47018 * 120.00219 * 9 7 5 12 12 H 1.48497 * 109.47139 * 240.00509 * 9 7 5 13 13 N 1.46491 * 109.47230 * 295.00028 * 3 2 1 14 14 C 1.34779 * 119.99956 * 84.99657 * 13 3 2 15 15 O 1.21278 * 119.99947 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99849 * 179.97438 * 14 13 3 17 17 C 1.53000 * 110.63996 * 61.69154 * 16 14 13 18 18 C 1.55161 * 110.71998 * 185.02575 * 16 14 13 19 19 C 1.55137 * 101.48526 * 82.69829 * 18 16 14 20 20 N 1.47423 * 104.71983 * 37.29517 * 19 18 16 21 21 C 1.34777 * 125.64829 * 155.82193 * 20 19 18 22 22 C 1.50700 * 119.99675 * 359.41380 * 21 20 19 23 23 O 1.21283 * 120.00463 * 179.69258 * 21 20 19 24 24 C 1.47019 * 108.70731 * 335.55081 * 20 19 18 25 25 H 1.08999 * 109.46845 * 59.99914 * 1 2 3 26 26 H 1.09000 * 109.46893 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47190 * 299.99701 * 1 2 3 28 28 H 1.08999 * 109.47190 * 240.00299 * 2 1 3 29 29 H 1.08998 * 109.47364 * 120.00139 * 2 1 3 30 30 H 0.96995 * 120.00276 * 179.97438 * 8 7 5 31 31 H 0.96997 * 120.00061 * 264.99771 * 13 3 2 32 32 H 1.08995 * 109.47238 * 298.30747 * 17 16 14 33 33 H 1.08998 * 109.47144 * 58.30981 * 17 16 14 34 34 H 1.09000 * 109.46931 * 178.30997 * 17 16 14 35 35 H 1.08994 * 111.00643 * 200.93609 * 18 16 14 36 36 H 1.08997 * 111.00606 * 324.75512 * 18 16 14 37 37 H 1.09007 * 110.49426 * 278.45664 * 19 18 16 38 38 H 1.08993 * 110.34231 * 156.05913 * 19 18 16 39 39 H 1.09003 * 109.47157 * 270.27323 * 22 21 20 40 40 H 1.08998 * 109.47436 * 30.27380 * 22 21 20 41 41 H 1.09000 * 109.47527 * 150.28105 * 22 21 20 42 42 H 1.09003 * 109.88210 * 120.70469 * 24 20 19 43 43 H 1.08999 * 109.89027 * 241.71929 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4063 0.3367 2.1729 9 14 6.0050 0.8800 1.3812 10 1 6.5988 1.5451 0.1936 11 1 6.4000 1.6156 2.6092 12 1 6.4961 -0.5191 1.4626 13 7 1.6525 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6326 -0.4340 16 6 0.0367 3.3387 -2.6544 17 6 0.0312 2.3353 -3.8094 18 6 -1.3484 4.0229 -2.5099 19 6 -0.9602 5.3682 -1.8419 20 7 0.3207 5.7419 -2.4688 21 6 0.8120 6.9931 -2.5664 22 6 0.0262 8.1560 -2.0175 23 8 1.8841 7.1838 -3.1005 24 6 0.9766 4.5229 -2.9642 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8293 -0.0617 2.9495 31 1 2.2720 2.1232 -1.9977 32 1 1.0352 1.9337 -3.9466 33 1 -0.6574 1.5219 -3.5809 34 1 -0.2880 2.8356 -4.7237 35 1 -1.8075 4.1853 -3.4850 36 1 -2.0055 3.4421 -1.8628 37 1 -0.8328 5.2379 -0.7672 38 1 -1.7175 6.1250 -2.0460 39 1 -0.6344 8.5460 -2.7919 40 1 -0.5683 7.8236 -1.1666 41 1 0.7127 8.9397 -1.6972 42 1 1.1355 4.5984 -4.0399 43 1 1.9315 4.3835 -2.4575 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368134254.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:56 Heat of formation + Delta-G solvation = -83.844281 kcal Electronic energy + Delta-G solvation = -23603.558942 eV Core-core repulsion = 20262.255972 eV Total energy + Delta-G solvation = -3341.302970 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.57739 -38.99052 -37.02890 -35.01630 -33.35522 -32.28824 -30.88846 -29.98905 -29.52043 -26.97580 -26.17240 -23.51577 -23.16119 -22.16045 -19.73727 -19.35814 -18.99224 -17.38817 -16.84315 -16.21617 -15.59201 -15.34064 -15.02763 -14.68534 -14.43929 -14.00031 -13.47467 -13.25764 -13.06553 -12.94584 -12.70196 -12.50461 -12.43754 -12.31356 -12.05057 -11.87434 -11.53714 -11.37644 -11.20247 -11.06247 -10.96425 -10.83221 -10.76794 -10.31237 -10.18674 -9.87746 -9.65234 -9.06399 -8.95404 -8.64483 -8.51354 -7.84989 -6.13763 -4.22896 2.63001 2.98957 3.23357 3.29249 3.31909 3.35130 3.96158 4.30278 4.35943 4.51337 4.77058 4.86744 5.13199 5.17848 5.21902 5.24914 5.30207 5.34896 5.49006 5.60286 5.65911 5.73347 5.83375 5.89748 5.97713 6.06000 6.17186 6.25542 6.35970 6.42477 6.62788 7.00765 7.16222 7.33544 7.42138 7.50415 7.60194 7.71014 7.88245 8.15083 8.16321 8.63744 8.76100 9.08831 9.44729 10.91535 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.005357 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.483714 B = 5225.329419 C = 6177.136443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.704 5.704 14 C 0.517 3.483 15 O -0.545 6.545 16 C -0.100 4.100 17 C -0.132 4.132 18 C -0.109 4.109 19 C 0.099 3.901 20 N -0.617 5.617 21 C 0.524 3.476 22 C -0.169 4.169 23 O -0.550 6.550 24 C 0.119 3.881 25 H 0.038 0.962 26 H 0.022 0.978 27 H 0.049 0.951 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.264 0.736 31 H 0.387 0.613 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.012 7.630 -10.287 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.351 5.351 14 C 0.300 3.700 15 O -0.423 6.423 16 C -0.104 4.104 17 C -0.189 4.189 18 C -0.147 4.147 19 C -0.024 4.024 20 N -0.352 5.352 21 C 0.314 3.686 22 C -0.228 4.228 23 O -0.428 6.428 24 C -0.004 4.004 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.220 0.780 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.914 7.687 -9.688 15.850 hybrid contribution 1.307 -0.123 -0.149 1.321 sum -8.607 7.563 -9.838 15.102 Atomic orbital electron populations 1.21833 0.98365 0.97996 1.01162 1.21930 0.92590 0.99789 1.02297 1.18787 0.94223 0.89151 0.80895 0.93390 1.21272 0.90744 1.38876 1.06290 0.92084 1.24867 0.98570 0.94776 0.95366 1.69896 1.35028 1.37702 1.09370 0.86426 0.84949 0.77766 0.78188 1.19708 1.20885 1.20847 1.46485 1.14487 1.55584 1.18508 1.19851 0.82895 0.79116 0.88092 1.90647 1.51481 1.60134 1.40079 1.21914 0.96875 0.95493 0.96073 1.21715 1.03190 0.98213 0.95813 1.22759 0.95627 0.94918 1.01439 1.22479 0.84683 0.96675 0.98568 1.48560 1.21981 1.06089 1.58542 1.20479 0.86030 0.82922 0.79171 1.21871 1.01624 0.96745 1.02565 1.90723 1.22552 1.84569 1.44979 1.21996 0.96081 0.82493 0.99873 0.94287 0.95906 0.93195 0.95044 0.88302 0.92632 0.78009 0.91538 0.91408 0.91631 0.90304 0.88162 0.90185 0.90498 0.89011 0.90071 0.88903 0.90683 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.52 37.16 0.32 -2.60 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.65 2.24 -69.08 -0.15 6.49 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.53 11.29 55.43 0.63 -23.90 16 9 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.70 -14.01 4.66 -54.93 -0.26 -14.26 16 14 C 0.52 9.41 4.86 -10.98 -0.05 9.36 16 15 O -0.54 -11.53 12.55 5.56 0.07 -11.46 16 16 C -0.10 -1.34 0.76 -153.82 -0.12 -1.45 16 17 C -0.13 -1.44 8.41 37.16 0.31 -1.13 16 18 C -0.11 -1.24 5.77 -24.46 -0.14 -1.39 16 19 C 0.10 1.14 6.03 -2.41 -0.01 1.12 16 20 N -0.62 -8.42 3.32 -170.37 -0.57 -8.99 16 21 C 0.52 7.51 7.96 -10.98 -0.09 7.42 16 22 C -0.17 -1.59 9.66 36.01 0.35 -1.24 16 23 O -0.55 -10.16 17.43 5.55 0.10 -10.07 16 24 C 0.12 1.67 6.00 -3.06 -0.02 1.65 16 25 H 0.04 0.79 5.65 -51.93 -0.29 0.50 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 1.14 7.85 -51.93 -0.41 0.74 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 2.61 5.95 -51.93 -0.31 2.31 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.39 6.93 8.02 -40.82 -0.33 6.60 16 32 H 0.07 0.72 7.83 -51.93 -0.41 0.31 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 35 H 0.08 0.71 8.05 -51.93 -0.42 0.30 16 36 H 0.10 1.24 7.31 -51.93 -0.38 0.87 16 37 H 0.08 1.08 7.95 -51.92 -0.41 0.67 16 38 H 0.08 0.64 7.53 -51.93 -0.39 0.25 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.65 7.17 -51.93 -0.37 0.28 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.96 7.82 -51.93 -0.41 0.56 16 43 H 0.08 1.25 7.44 -51.93 -0.39 0.86 16 LS Contribution 340.82 15.07 5.14 5.14 Total: -1.00 -31.86 340.82 -7.05 -38.90 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.98 Total: 6.43 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -0.15 Total: 2.50 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.20 Total: -47.15 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: 0.17 Total: -21.53 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.86 -7.05 -38.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368134254.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.941 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds