Wall clock time and date at job start Tue Mar 31 2020 06:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46894 * 60.00253 * 9 7 5 11 11 H 1.48500 * 109.47102 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47542 * 300.00050 * 9 7 5 13 13 N 1.46497 * 109.47195 * 64.99866 * 3 2 1 14 14 C 1.34777 * 120.00660 * 275.00187 * 13 3 2 15 15 O 1.21281 * 119.99633 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00373 * 179.97438 * 14 13 3 17 17 C 1.52994 * 110.30556 * 302.18003 * 16 14 13 18 18 C 1.54286 * 110.33902 * 180.02562 * 16 14 13 19 19 C 1.54397 * 104.95929 * 241.12924 * 18 16 14 20 20 N 1.48149 * 104.61544 * 23.86879 * 19 18 16 21 21 C 1.34778 * 127.83277 * 140.38944 * 20 19 18 22 22 C 1.50693 * 120.00496 * 359.97438 * 21 20 19 23 23 O 1.21286 * 119.99545 * 179.97438 * 21 20 19 24 24 C 1.48144 * 104.32560 * 320.41536 * 20 19 18 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 31 31 H 0.97010 * 119.99804 * 95.00047 * 13 3 2 32 32 H 1.08996 * 109.47836 * 59.29764 * 17 16 14 33 33 H 1.09002 * 109.46774 * 179.29838 * 17 16 14 34 34 H 1.09006 * 109.46882 * 299.29238 * 17 16 14 35 35 H 1.09000 * 110.34678 * 0.02562 * 18 16 14 36 36 H 1.09001 * 110.33827 * 122.16336 * 18 16 14 37 37 H 1.08996 * 110.40502 * 142.65135 * 19 18 16 38 38 H 1.08997 * 110.40546 * 265.08570 * 19 18 16 39 39 H 1.09002 * 109.46966 * 359.97438 * 22 21 20 40 40 H 1.09001 * 109.47473 * 119.99519 * 22 21 20 41 41 H 1.09003 * 109.47269 * 239.99740 * 22 21 20 42 42 H 1.08996 * 110.40516 * 280.79987 * 24 20 19 43 43 H 1.08995 * 110.40679 * 158.36793 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2351 11 1 6.3977 0.2169 -2.6505 12 1 6.4994 2.2817 -1.3823 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0362 3.3376 2.6549 17 6 0.1254 2.3501 3.8201 18 6 -1.3936 3.9061 2.5424 19 6 -1.2348 5.4280 2.7483 20 7 0.1699 5.7115 2.3726 21 6 0.6450 6.7711 1.6884 22 6 -0.2990 7.8439 1.2100 23 8 1.8323 6.8612 1.4578 24 6 0.9338 4.5658 2.9188 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.8292 -0.0602 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 1.1462 1.9771 3.9030 33 1 -0.1536 2.8539 4.7455 34 1 -0.5530 1.5157 3.6418 35 1 -1.8077 3.6980 1.5558 36 1 -2.0320 3.4820 3.3175 37 1 -1.9194 5.9729 2.0984 38 1 -1.4096 5.6907 3.7916 39 1 -1.3167 7.5918 1.5083 40 1 -0.0168 8.7997 1.6517 41 1 -0.2465 7.9161 0.1237 42 1 1.0978 4.6938 3.9887 43 1 1.8853 4.4602 2.3976 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368134255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:59 Heat of formation + Delta-G solvation = -79.056084 kcal Electronic energy + Delta-G solvation = -23698.393021 eV Core-core repulsion = 20357.297682 eV Total energy + Delta-G solvation = -3341.095339 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48913 -38.89828 -37.06036 -34.98166 -33.26738 -32.22979 -30.86115 -29.96135 -29.43121 -26.90361 -26.10817 -23.93352 -23.15017 -21.83975 -19.70254 -19.28132 -18.91796 -17.36761 -16.65402 -16.06566 -15.71297 -15.35324 -15.21795 -14.58082 -14.45072 -14.04081 -13.42755 -13.34712 -13.06974 -12.70145 -12.64949 -12.46189 -12.31335 -12.25208 -12.03503 -11.76161 -11.52444 -11.38763 -11.16393 -10.96265 -10.93774 -10.77370 -10.61428 -10.29771 -10.13614 -9.80478 -9.61492 -9.03475 -8.99321 -8.65887 -8.45980 -7.79300 -6.08776 -4.17786 2.69136 2.97009 3.29145 3.33974 3.35400 3.37959 4.03993 4.36533 4.40194 4.57993 4.80501 4.97534 5.03047 5.15794 5.22572 5.30407 5.31672 5.35038 5.47305 5.56852 5.64114 5.73707 5.76566 5.92244 5.98709 6.07269 6.22000 6.36209 6.39108 6.45699 6.66376 7.04085 7.20431 7.37935 7.48220 7.57477 7.64482 7.75721 7.93490 8.20809 8.21360 8.69653 8.81035 9.15431 9.49432 10.96604 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.005570 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.078373 B = 5025.714645 C = 5923.002872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.047 0.953 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.704 5.704 14 C 0.516 3.484 15 O -0.545 6.545 16 C -0.101 4.101 17 C -0.133 4.133 18 C -0.125 4.125 19 C 0.102 3.898 20 N -0.622 5.622 21 C 0.530 3.470 22 C -0.168 4.168 23 O -0.543 6.543 24 C 0.115 3.885 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.264 0.736 31 H 0.387 0.613 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.365 8.050 12.859 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.351 5.351 14 C 0.300 3.700 15 O -0.424 6.424 16 C -0.105 4.105 17 C -0.191 4.191 18 C -0.163 4.163 19 C -0.021 4.021 20 N -0.357 5.357 21 C 0.320 3.680 22 C -0.227 4.227 23 O -0.420 6.420 24 C -0.008 4.008 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.219 0.781 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.191 8.076 11.769 17.538 hybrid contribution 1.250 -0.120 0.267 1.284 sum -8.941 7.957 12.036 16.974 Atomic orbital electron populations 1.21832 0.98412 0.97934 1.01167 1.21927 0.92548 0.99820 1.02256 1.18765 0.94189 0.89087 0.80969 0.93480 1.21196 0.90742 1.38878 1.06331 0.92194 1.24868 0.98571 0.94803 0.95351 1.69882 1.35184 1.37713 1.09320 0.86529 0.84950 0.78377 0.77403 1.20162 1.21135 1.20137 1.46451 1.14483 1.55697 1.18452 1.19908 0.82831 0.78962 0.88338 1.90623 1.51516 1.60045 1.40225 1.21774 0.96981 0.95900 0.95850 1.21800 1.03074 0.98383 0.95819 1.22650 0.95043 0.93470 1.05138 1.22458 0.82963 0.96546 1.00136 1.49012 1.09332 1.22014 1.55349 1.20450 0.89193 0.81695 0.76635 1.21861 0.99142 0.97781 1.03963 1.90761 1.17189 1.77474 1.56528 1.22380 0.96172 0.83311 0.98925 0.94300 0.93236 0.95923 0.95060 0.88317 0.92558 0.78087 0.91655 0.91655 0.91560 0.88196 0.90050 0.90009 0.91039 0.90508 0.88873 0.88623 0.90381 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.92 2.24 -69.09 -0.15 6.77 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -14.41 8.73 -34.44 -0.30 -14.71 16 6 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -25.18 11.29 55.43 0.63 -24.55 16 9 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.70 -14.63 4.68 -54.93 -0.26 -14.89 16 14 C 0.52 9.94 5.02 -10.99 -0.06 9.89 16 15 O -0.55 -12.38 12.39 5.56 0.07 -12.31 16 16 C -0.10 -1.38 0.87 -154.26 -0.13 -1.51 16 17 C -0.13 -1.43 8.13 37.15 0.30 -1.13 16 18 C -0.12 -1.45 6.24 -25.33 -0.16 -1.61 16 19 C 0.10 1.00 6.80 -2.40 -0.02 0.98 16 20 N -0.62 -8.49 3.32 -169.31 -0.56 -9.05 16 21 C 0.53 8.12 8.02 -10.99 -0.09 8.03 16 22 C -0.17 -1.70 10.24 36.00 0.37 -1.33 16 23 O -0.54 -10.96 17.37 5.55 0.10 -10.86 16 24 C 0.12 1.59 6.13 -2.41 -0.01 1.58 16 25 H 0.04 0.82 5.64 -51.93 -0.29 0.53 16 26 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.39 7.14 7.88 -40.82 -0.32 6.81 16 32 H 0.06 0.70 7.50 -51.93 -0.39 0.31 16 33 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.10 1.45 6.46 -51.93 -0.34 1.11 16 36 H 0.08 0.73 7.71 -51.93 -0.40 0.33 16 37 H 0.08 0.67 6.44 -51.93 -0.33 0.34 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.58 5.99 -51.93 -0.31 0.27 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16 43 H 0.09 1.53 7.41 -51.93 -0.38 1.14 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -33.87 338.89 -6.90 -40.77 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -6.79 Total: 6.83 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -0.17 Total: 2.78 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.19 Total: -48.49 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.17 Total: -23.18 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.87 -6.90 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368134255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.285 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds