Wall clock time and date at job start Tue Mar 31 2020 06:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 C 1.53005 * 110.30264 * 302.17469 * 16 14 13 18 18 C 1.54289 * 110.34109 * 180.02562 * 16 14 13 19 19 C 1.54388 * 104.95598 * 241.12870 * 18 16 14 20 20 N 1.48149 * 104.62003 * 23.86365 * 19 18 16 21 21 C 1.34776 * 127.83396 * 140.39488 * 20 19 18 22 22 C 1.50699 * 120.00378 * 359.97438 * 21 20 19 23 23 O 1.21285 * 119.99322 * 179.97438 * 21 20 19 24 24 C 1.48144 * 104.32441 * 320.41570 * 20 19 18 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 32 32 H 1.08991 * 109.47107 * 59.30098 * 17 16 14 33 33 H 1.08994 * 109.47105 * 179.30203 * 17 16 14 34 34 H 1.09001 * 109.46712 * 299.29963 * 17 16 14 35 35 H 1.09002 * 110.34182 * 359.97438 * 18 16 14 36 36 H 1.09000 * 110.34226 * 122.15174 * 18 16 14 37 37 H 1.08996 * 110.40537 * 142.65226 * 19 18 16 38 38 H 1.09002 * 110.40298 * 265.08126 * 19 18 16 39 39 H 1.09003 * 109.46746 * 59.99903 * 22 21 20 40 40 H 1.09001 * 109.46896 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.47047 * 300.00378 * 22 21 20 42 42 H 1.08994 * 110.40996 * 280.80259 * 24 20 19 43 43 H 1.08994 * 110.40589 * 158.36665 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 6 1.0266 4.4518 -3.0002 18 6 -1.3931 3.9074 -2.5418 19 6 -2.2032 3.1692 -3.6292 20 7 -1.4612 1.9073 -3.8563 21 6 -1.9683 0.6762 -4.0657 22 6 -3.4610 0.4697 -4.0864 23 8 -1.2233 -0.2653 -4.2375 24 6 -0.0353 2.3054 -3.8004 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0605 2.9503 31 1 2.2720 2.1232 -1.9977 32 1 2.0266 4.0303 -3.1020 33 1 0.7328 4.9209 -3.9391 34 1 1.0259 5.1978 -2.2055 35 1 -1.8068 3.6998 -1.5550 36 1 -1.3895 4.9806 -2.7327 37 1 -3.2119 2.9584 -3.2741 38 1 -2.2373 3.7601 -4.5445 39 1 -3.9004 1.0740 -4.8800 40 1 -3.6796 -0.5826 -4.2681 41 1 -3.8824 0.7683 -3.1266 42 1 0.2692 2.7613 -4.7424 43 1 0.5915 1.4428 -3.5745 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368134256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:02 Heat of formation + Delta-G solvation = -80.850064 kcal Electronic energy + Delta-G solvation = -23857.469319 eV Core-core repulsion = 20516.296187 eV Total energy + Delta-G solvation = -3341.173131 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.49703 -38.89349 -37.06459 -34.97916 -33.26436 -32.24079 -30.81438 -29.94490 -29.44256 -26.92768 -26.10303 -23.92564 -23.13557 -21.81434 -19.69698 -19.30275 -18.91797 -17.33917 -16.64375 -16.13400 -15.66012 -15.37973 -15.24444 -14.54579 -14.45625 -13.92924 -13.55695 -13.28826 -13.04129 -12.73210 -12.64084 -12.44568 -12.30222 -12.23168 -12.04743 -11.87459 -11.43115 -11.39512 -11.15728 -10.99540 -10.93035 -10.78234 -10.61893 -10.29552 -10.11360 -9.83819 -9.57443 -9.03739 -8.99082 -8.66279 -8.46228 -7.78762 -6.09590 -4.19110 2.66957 2.95087 3.27072 3.32345 3.33174 3.37398 4.03806 4.35882 4.38528 4.58347 4.80117 4.98777 5.07049 5.14736 5.21420 5.27735 5.30988 5.32761 5.46887 5.55816 5.63768 5.71704 5.76737 5.93029 5.98412 6.08824 6.22417 6.36300 6.46565 6.53075 6.72910 7.12658 7.23648 7.41448 7.49260 7.55710 7.65413 7.76667 7.93330 8.18728 8.21961 8.69685 8.79903 9.15367 9.48089 10.95675 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022529 B = 0.005073 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.539936 B = 5517.638885 C = 5996.872132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.126 4.126 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.704 5.704 14 C 0.516 3.484 15 O -0.545 6.545 16 C -0.101 4.101 17 C -0.133 4.133 18 C -0.125 4.125 19 C 0.103 3.897 20 N -0.623 5.623 21 C 0.531 3.469 22 C -0.168 4.168 23 O -0.542 6.542 24 C 0.116 3.884 25 H 0.038 0.962 26 H 0.047 0.953 27 H 0.021 0.979 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.596 7.571 -13.045 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.165 4.165 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.351 5.351 14 C 0.300 3.700 15 O -0.424 6.424 16 C -0.105 4.105 17 C -0.191 4.191 18 C -0.163 4.163 19 C -0.020 4.020 20 N -0.358 5.358 21 C 0.320 3.680 22 C -0.227 4.227 23 O -0.419 6.419 24 C -0.007 4.007 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.116 0.884 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.219 0.781 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.770 6.785 -12.270 17.681 hybrid contribution 1.313 0.039 -0.215 1.331 sum -9.458 6.825 -12.485 17.085 Atomic orbital electron populations 1.21800 0.98407 0.97972 1.00943 1.21916 0.92590 0.99810 1.02217 1.18769 0.94134 0.89162 0.80898 0.93408 1.21188 0.90719 1.39099 1.06238 0.92195 1.24880 0.98542 0.94791 0.95405 1.69890 1.35194 1.37555 1.09321 0.86523 0.84946 0.78257 0.77456 1.20213 1.21149 1.20169 1.46452 1.14506 1.55669 1.18462 1.19908 0.82711 0.79085 0.88339 1.90624 1.51342 1.60100 1.40351 1.21778 0.97411 0.96454 0.94867 1.21801 0.98358 0.97080 1.01858 1.22650 0.92984 0.99407 1.01267 1.22424 0.96529 0.84592 0.98419 1.48964 1.07950 1.07331 1.71513 1.20434 0.91268 0.80569 0.75698 1.21878 0.91814 1.04890 1.04161 1.90752 1.61662 1.39873 1.49628 1.22369 0.83461 0.97870 0.96994 0.94312 0.93396 0.96022 0.88376 0.95075 0.92538 0.78092 0.91609 0.91699 0.91485 0.88206 0.90028 0.90151 0.91060 0.89659 0.88992 0.89322 0.90383 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.52 37.16 0.32 -2.88 16 2 C -0.13 -3.22 5.45 -26.74 -0.15 -3.37 16 3 C 0.27 6.93 2.24 -69.09 -0.15 6.77 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.19 8.73 -34.44 -0.30 -14.49 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -25.01 11.29 55.43 0.63 -24.39 16 9 Si 0.90 20.79 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.70 -14.62 4.69 -54.94 -0.26 -14.88 16 14 C 0.52 9.93 5.02 -10.98 -0.06 9.87 16 15 O -0.55 -12.37 12.40 5.56 0.07 -12.30 16 16 C -0.10 -1.37 0.87 -154.25 -0.13 -1.51 16 17 C -0.13 -1.46 8.14 37.16 0.30 -1.16 16 18 C -0.12 -1.44 6.24 -25.33 -0.16 -1.60 16 19 C 0.10 0.99 6.92 -2.41 -0.02 0.98 16 20 N -0.62 -8.25 3.32 -169.31 -0.56 -8.81 16 21 C 0.53 7.86 8.02 -10.99 -0.09 7.77 16 22 C -0.17 -1.64 9.30 36.01 0.33 -1.31 16 23 O -0.54 -10.59 17.35 5.55 0.10 -10.49 16 24 C 0.12 1.57 6.13 -2.41 -0.01 1.56 16 25 H 0.04 0.91 5.65 -51.93 -0.29 0.62 16 26 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.10 2.74 5.95 -51.93 -0.31 2.43 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.39 7.13 7.88 -40.82 -0.32 6.81 16 32 H 0.06 0.73 7.50 -51.93 -0.39 0.34 16 33 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.44 6.46 -51.93 -0.34 1.10 16 36 H 0.08 0.73 7.71 -51.93 -0.40 0.33 16 37 H 0.08 0.65 7.30 -51.93 -0.38 0.27 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 41 H 0.09 0.78 7.95 -51.93 -0.41 0.37 16 42 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 43 H 0.09 1.46 7.41 -51.93 -0.38 1.07 16 LS Contribution 340.85 15.07 5.14 5.14 Total: -1.00 -33.44 340.85 -7.05 -40.49 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.93 Total: 7.11 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -0.21 Total: 2.36 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -0.19 Total: -48.07 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.17 Total: -22.79 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.44 -7.05 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368134256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.359 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds