Wall clock time and date at job start Tue Mar 31 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47063 * 2 1 4 4 H 1.09007 * 109.71244 * 60.39935 * 3 2 1 5 5 C 1.53297 * 109.68430 * 299.86537 * 3 2 1 6 6 O 1.42960 * 109.26727 * 187.95156 * 5 3 2 7 7 C 1.43056 * 114.11009 * 62.54196 * 6 5 3 8 8 C 1.53298 * 109.25579 * 297.45994 * 7 6 5 9 9 N 1.47151 * 109.68141 * 180.93454 * 3 2 1 10 10 C 1.34769 * 120.98339 * 350.23605 * 9 3 2 11 11 O 1.21586 * 119.99873 * 5.21616 * 10 9 3 12 12 N 1.34777 * 120.00453 * 185.20995 * 10 9 3 13 13 C 1.46503 * 120.00548 * 185.00577 * 12 10 9 14 14 C 1.52997 * 109.47245 * 175.00076 * 13 12 10 15 15 C 1.50697 * 115.55118 * 305.90844 * 14 13 12 16 16 H 1.08010 * 119.99803 * 144.19939 * 15 14 13 17 17 C 1.37868 * 120.00242 * 324.20352 * 15 14 13 18 18 N 1.31515 * 120.00028 * 3.22137 * 17 15 14 19 19 Si 1.86805 * 120.00327 * 183.22233 * 17 15 14 20 20 H 1.48496 * 109.47112 * 89.99703 * 19 17 15 21 21 H 1.48497 * 109.47218 * 209.99977 * 19 17 15 22 22 H 1.48497 * 109.46905 * 329.99698 * 19 17 15 23 23 C 1.52995 * 117.49956 * 160.23445 * 14 13 12 24 24 C 1.53005 * 117.49694 * 91.57932 * 14 13 12 25 25 H 1.09007 * 109.46856 * 65.38279 * 1 2 3 26 26 H 1.09002 * 109.47276 * 185.37941 * 1 2 3 27 27 H 1.09002 * 109.47320 * 305.38116 * 1 2 3 28 28 H 1.09002 * 109.47245 * 240.00104 * 2 1 3 29 29 H 1.09002 * 109.47072 * 119.99588 * 2 1 3 30 30 H 1.09007 * 109.50741 * 307.89509 * 5 3 2 31 31 H 1.08998 * 109.51270 * 67.99497 * 5 3 2 32 32 H 1.09003 * 109.49239 * 177.53202 * 7 6 5 33 33 H 1.08992 * 109.54208 * 57.42148 * 7 6 5 34 34 H 1.08997 * 109.68288 * 292.58539 * 8 7 6 35 35 H 1.09000 * 109.67993 * 172.02581 * 8 7 6 36 36 H 0.97003 * 119.99352 * 5.00897 * 12 10 9 37 37 H 1.08999 * 109.46750 * 294.99999 * 13 12 10 38 38 H 1.08997 * 109.46540 * 54.99826 * 13 12 10 39 39 H 0.97001 * 120.00368 * 185.01066 * 18 17 15 40 40 H 1.09001 * 117.49616 * 0.02562 * 23 14 13 41 41 H 1.09004 * 117.49888 * 145.01867 * 23 14 13 42 42 H 1.08997 * 117.49676 * 214.97812 * 24 14 13 43 43 H 1.09002 * 117.50095 * 359.97365 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6847 1.9581 0.8923 5 6 1.5345 2.1689 -1.2517 6 8 2.1624 3.4502 -1.3394 7 6 3.5844 3.3954 -1.4857 8 6 4.1949 2.7319 -0.2459 9 7 3.5113 1.4480 -0.0226 10 6 4.2122 0.3108 0.1564 11 8 3.6314 -0.7536 0.2452 12 7 5.5568 0.3535 0.2369 13 6 6.3256 -0.8908 0.3212 14 6 7.8210 -0.5704 0.2766 15 6 8.2731 0.2595 -0.8972 16 1 9.0591 0.9896 -0.7716 17 6 7.6836 0.0868 -2.1315 18 7 6.6840 -0.7564 -2.2706 19 14 8.3046 1.0505 -3.6064 20 1 9.3757 0.2790 -4.2865 21 1 7.1844 1.2828 -4.5532 22 1 8.8472 2.3559 -3.1518 23 6 8.7871 -1.6327 0.8046 24 6 8.5377 -0.3560 1.6113 25 1 -0.3633 0.4281 -0.9343 26 1 -0.3634 -1.0231 0.0963 27 1 -0.3634 0.5950 0.8379 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7795 1.5821 -2.1370 31 1 0.4539 2.2966 -1.1871 32 1 3.9787 4.4063 -1.5889 33 1 3.8376 2.8135 -2.3718 34 1 4.0564 3.3772 0.6216 35 1 5.2585 2.5580 -0.4088 36 1 6.0156 1.2082 0.2391 37 1 6.0909 -1.4002 1.2559 38 1 6.0668 -1.5352 -0.5188 39 1 6.3168 -0.9325 -3.1510 40 1 8.3574 -2.5600 1.1835 41 1 9.7499 -1.7312 0.3032 42 1 9.3365 0.3851 1.6402 43 1 7.9437 -0.4427 2.5211 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408383661.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:17 Heat of formation + Delta-G solvation = -29.069696 kcal Electronic energy + Delta-G solvation = -24028.308860 eV Core-core repulsion = 20689.381093 eV Total energy + Delta-G solvation = -3338.927766 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.22587 -38.07680 -36.75595 -34.77668 -34.09780 -32.48882 -32.07385 -29.65065 -27.28669 -25.84867 -25.22512 -24.29291 -22.11864 -21.28062 -21.07056 -19.24277 -19.00935 -17.42595 -16.43761 -16.11536 -15.80740 -15.29948 -14.91356 -14.80028 -14.66938 -14.11467 -13.78043 -13.45419 -13.27936 -12.91789 -12.81786 -12.40489 -12.33040 -11.74200 -11.64576 -11.44953 -11.17769 -11.14613 -11.07334 -10.74248 -10.56357 -10.54483 -10.40975 -10.26557 -9.98914 -9.65521 -9.02421 -8.84805 -8.57976 -8.28873 -8.13147 -7.65113 -6.02140 -4.21840 3.15825 3.18689 3.27149 3.27803 3.89953 4.05784 4.25965 4.63535 4.88184 4.98254 5.14041 5.19749 5.22945 5.32828 5.41879 5.46504 5.53275 5.67118 5.69092 5.81153 5.85706 5.95877 6.01886 6.03658 6.24967 6.30460 6.53505 6.60731 6.61528 6.70855 6.73945 6.88307 7.00302 7.12106 7.18948 7.24940 7.53113 7.65292 7.78430 7.98416 8.29923 8.74547 8.93627 9.41318 9.50876 10.87124 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016630 B = 0.006486 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.298673 B = 4315.987607 C = 5157.101146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.110 4.110 3 C 0.136 3.864 4 H 0.068 0.932 5 C 0.050 3.950 6 O -0.385 6.385 7 C 0.048 3.952 8 C 0.079 3.921 9 N -0.639 5.639 10 C 0.708 3.292 11 O -0.597 6.597 12 N -0.700 5.700 13 C 0.184 3.816 14 C 0.035 3.965 15 C -0.496 4.496 16 H 0.060 0.940 17 C 0.075 3.925 18 N -0.863 5.863 19 Si 0.889 3.111 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.198 4.198 24 C -0.212 4.212 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.391 0.609 37 H 0.015 0.985 38 H 0.113 0.887 39 H 0.261 0.739 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.041 6.390 2.766 10.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.147 4.147 3 C 0.032 3.968 4 H 0.086 0.914 5 C -0.028 4.028 6 O -0.303 6.303 7 C -0.030 4.030 8 C -0.045 4.045 9 N -0.379 5.379 10 C 0.410 3.590 11 O -0.477 6.477 12 N -0.352 5.352 13 C 0.060 3.940 14 C 0.034 3.966 15 C -0.533 4.533 16 H 0.078 0.922 17 C -0.129 4.129 18 N -0.499 5.499 19 Si 0.716 3.284 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.236 4.236 24 C -0.250 4.250 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.226 0.774 37 H 0.033 0.967 38 H 0.130 0.870 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.692 5.717 2.686 10.744 hybrid contribution 0.967 0.683 -0.889 1.480 sum -7.725 6.400 1.797 10.191 Atomic orbital electron populations 1.22013 0.97460 1.01536 1.00816 1.21995 0.92704 0.93768 1.06262 1.21700 0.79277 0.98232 0.97629 0.91392 1.23149 0.97634 0.84631 0.97395 1.87918 1.19735 1.28437 1.94225 1.22974 0.81203 1.01664 0.97148 1.22247 0.98317 0.85705 0.98253 1.47293 1.05555 1.06857 1.78185 1.15853 0.82257 0.82925 0.77965 1.90837 1.68374 1.28773 1.59718 1.45021 1.03350 1.10831 1.76009 1.20919 0.88372 0.85121 0.99570 1.19266 0.89630 0.96756 0.90912 1.20486 1.19631 1.20744 0.92457 0.92212 1.24983 0.93872 0.95326 0.98726 1.69895 1.22730 1.34403 1.22881 0.86641 0.78531 0.80453 0.82738 1.20540 1.21236 1.19813 1.22927 1.02674 0.92116 1.05911 1.22951 1.04894 1.00701 0.96434 0.93370 0.92631 0.93238 0.90570 0.88655 0.92649 0.88149 0.88005 0.92414 0.91328 0.88620 0.77423 0.96714 0.86968 0.92812 0.91459 0.90248 0.90700 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.42 37.16 0.35 -1.58 16 2 C -0.11 -1.74 3.89 -26.73 -0.10 -1.85 16 3 C 0.14 2.07 3.21 -67.42 -0.22 1.85 16 4 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 5 C 0.05 0.68 5.69 37.31 0.21 0.89 16 6 O -0.38 -5.58 10.75 -35.23 -0.38 -5.96 16 7 C 0.05 0.66 6.98 37.31 0.26 0.92 16 8 C 0.08 1.16 6.52 -3.53 -0.02 1.14 16 9 N -0.64 -11.14 3.02 -170.43 -0.51 -11.65 16 10 C 0.71 14.98 8.23 -86.93 -0.72 14.27 16 11 O -0.60 -14.03 11.90 5.29 0.06 -13.97 16 12 N -0.70 -15.06 4.95 -65.23 -0.32 -15.38 16 13 C 0.18 4.33 4.61 -4.04 -0.02 4.31 16 14 C 0.04 0.82 2.03 -155.66 -0.32 0.50 16 15 C -0.50 -12.31 8.42 -34.44 -0.29 -12.60 16 16 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 17 C 0.08 1.89 5.31 -17.82 -0.09 1.79 16 18 N -0.86 -22.60 10.20 55.43 0.57 -22.04 16 19 Si 0.89 19.67 29.54 -169.99 -5.02 14.65 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 C -0.20 -4.28 9.96 -26.70 -0.27 -4.54 16 24 C -0.21 -4.38 9.92 -26.69 -0.26 -4.64 16 25 H 0.05 0.52 6.94 -51.93 -0.36 0.16 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 1.42 7.22 -51.93 -0.38 1.05 16 29 H 0.10 1.76 6.33 -51.93 -0.33 1.43 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 1.13 7.04 -51.93 -0.37 0.77 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.10 1.48 5.88 -51.93 -0.31 1.17 16 36 H 0.39 7.97 5.77 -40.82 -0.24 7.73 16 37 H 0.01 0.35 8.09 -51.93 -0.42 -0.07 16 38 H 0.11 3.03 5.93 -51.93 -0.31 2.72 16 39 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 42 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -27.72 334.77 -8.95 -36.67 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -6.89 Total: 12.16 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.49 Total: 0.47 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.27 Total: -49.07 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.32 Total: -19.93 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.72 -8.95 -36.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408383661.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.597 kcal (2) G-P(sol) polarization free energy of solvation -27.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds