Wall clock time and date at job start Tue Mar 31 2020 06:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47352 * 2 1 4 4 H 1.08997 * 109.70990 * 297.38124 * 3 2 1 5 5 C 1.53713 * 109.74355 * 58.15279 * 3 2 1 6 6 O 1.42963 * 109.14424 * 172.16537 * 5 3 2 7 7 C 1.42957 * 114.16681 * 297.28642 * 6 5 3 8 8 C 1.53297 * 109.22411 * 62.58485 * 7 6 5 9 9 N 1.47149 * 109.68331 * 176.84551 * 3 2 1 10 10 C 1.34784 * 120.98028 * 9.76579 * 9 3 2 11 11 O 1.21581 * 119.99688 * 5.03904 * 10 9 3 12 12 N 1.34772 * 119.99679 * 185.03727 * 10 9 3 13 13 C 1.46508 * 119.99822 * 185.11839 * 12 10 9 14 14 C 1.53000 * 109.47230 * 175.28170 * 13 12 10 15 15 C 1.50703 * 115.54820 * 305.67009 * 14 13 12 16 16 H 1.08005 * 119.99537 * 151.56003 * 15 14 13 17 17 C 1.37867 * 120.00435 * 331.55925 * 15 14 13 18 18 N 1.31517 * 119.99745 * 4.14943 * 17 15 14 19 19 Si 1.86800 * 120.00451 * 184.14841 * 17 15 14 20 20 H 1.48501 * 109.46992 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47212 * 119.99910 * 19 17 15 22 22 H 1.48501 * 109.47013 * 240.00270 * 19 17 15 23 23 C 1.52995 * 117.49833 * 159.99532 * 14 13 12 24 24 C 1.53001 * 117.49537 * 91.33543 * 14 13 12 25 25 H 1.09004 * 109.46719 * 304.69824 * 1 2 3 26 26 H 1.09001 * 109.46911 * 64.69322 * 1 2 3 27 27 H 1.08998 * 109.47015 * 184.69740 * 1 2 3 28 28 H 1.09007 * 109.46590 * 240.00498 * 2 1 3 29 29 H 1.08995 * 109.47194 * 120.00538 * 2 1 3 30 30 H 1.08998 * 109.65886 * 52.20109 * 5 3 2 31 31 H 1.09003 * 109.48344 * 292.02292 * 5 3 2 32 32 H 1.08997 * 109.51672 * 302.65970 * 7 6 5 33 33 H 1.09006 * 109.55772 * 182.53273 * 7 6 5 34 34 H 1.09000 * 109.68116 * 187.97178 * 8 7 6 35 35 H 1.09000 * 109.71178 * 67.43509 * 8 7 6 36 36 H 0.97001 * 120.00360 * 5.39269 * 12 10 9 37 37 H 1.08993 * 109.46941 * 295.28710 * 13 12 10 38 38 H 1.08997 * 109.46870 * 55.28581 * 13 12 10 39 39 H 0.96998 * 119.99962 * 185.00763 * 18 17 15 40 40 H 1.08995 * 117.50130 * 0.02562 * 23 14 13 41 41 H 1.09009 * 117.49558 * 145.02163 * 23 14 13 42 42 H 1.09007 * 117.49870 * 214.97913 * 24 14 13 43 43 H 1.08994 * 117.50031 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.7177 1.9464 -0.9112 5 6 1.4934 2.1865 1.2290 6 8 2.1188 3.4691 1.3170 7 6 3.5342 3.4180 1.5111 8 6 4.1852 2.7361 0.3022 9 7 3.5096 1.4486 0.0762 10 6 4.2162 0.3092 -0.0624 11 8 3.6480 -0.7280 -0.3444 12 7 5.5526 0.3198 0.1115 13 6 6.3347 -0.8915 -0.1483 14 6 7.8244 -0.5804 0.0098 15 6 8.3391 0.5710 -0.8153 16 1 9.1829 1.1491 -0.4685 17 6 7.7328 0.8863 -2.0127 18 7 6.6560 0.2357 -2.3959 19 14 8.4407 2.2376 -3.0907 20 1 9.6453 2.8112 -2.4385 21 1 8.8146 1.6721 -4.4119 22 1 7.4248 3.3044 -3.2784 23 6 8.7710 -1.7589 0.2461 24 6 8.4482 -0.7946 1.3903 25 1 -0.3633 0.5850 0.8450 26 1 -0.3633 0.4393 -0.9291 27 1 -0.3633 -1.0242 0.0842 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.7095 1.6135 2.1306 31 1 0.4156 2.3132 1.1276 32 1 3.7577 2.8494 2.4137 33 1 3.9255 4.4304 1.6124 34 1 5.2430 2.5656 0.5024 35 1 4.0756 3.3679 -0.5793 36 1 5.9962 1.1282 0.4125 37 1 6.0484 -1.6679 0.5610 38 1 6.1417 -1.2377 -1.1636 39 1 6.2716 0.4064 -3.2700 40 1 8.3326 -2.7559 0.2886 41 1 9.7662 -1.7013 -0.1949 42 1 9.2312 -0.1031 1.7017 43 1 7.7972 -1.1568 2.1860 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408383662.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:21 Heat of formation + Delta-G solvation = -24.707440 kcal Electronic energy + Delta-G solvation = -24013.292311 eV Core-core repulsion = 20674.553706 eV Total energy + Delta-G solvation = -3338.738605 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19668 -38.07198 -36.75842 -34.77196 -34.05662 -32.53980 -31.98662 -29.64722 -27.24166 -25.84330 -25.24188 -24.30957 -22.11821 -21.27539 -21.03222 -19.20889 -18.97600 -17.43059 -16.45484 -16.15463 -15.83942 -15.17074 -14.98420 -14.81013 -14.61801 -14.05771 -13.71005 -13.65053 -13.09777 -13.02185 -12.73060 -12.41169 -12.36110 -11.74053 -11.60410 -11.42674 -11.17069 -11.13481 -11.05646 -10.69805 -10.53073 -10.52121 -10.47025 -10.25259 -10.00538 -9.66529 -9.01094 -8.88231 -8.51718 -8.30769 -8.11541 -7.55689 -5.99418 -4.20670 3.17126 3.22379 3.28794 3.30877 3.86139 4.12219 4.26929 4.65467 4.85965 4.97995 5.09654 5.18755 5.24355 5.30530 5.40725 5.47784 5.49800 5.63424 5.69800 5.78692 5.88632 5.96756 6.02236 6.05786 6.24565 6.31366 6.54292 6.58722 6.61506 6.73869 6.74061 6.88336 7.00913 7.12009 7.18175 7.24264 7.57079 7.68907 7.85773 7.98904 8.30233 8.75826 9.00486 9.41110 9.58468 10.86042 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017178 B = 0.006004 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.579843 B = 4662.260103 C = 5116.611020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.113 4.113 3 C 0.136 3.864 4 H 0.069 0.931 5 C 0.050 3.950 6 O -0.384 6.384 7 C 0.048 3.952 8 C 0.081 3.919 9 N -0.639 5.639 10 C 0.711 3.289 11 O -0.599 6.599 12 N -0.693 5.693 13 C 0.192 3.808 14 C 0.034 3.966 15 C -0.495 4.495 16 H 0.060 0.940 17 C 0.073 3.927 18 N -0.859 5.859 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.284 1.284 23 C -0.202 4.202 24 C -0.215 4.215 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.389 0.611 37 H 0.012 0.988 38 H 0.110 0.890 39 H 0.260 0.740 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.189 4.600 6.164 11.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.150 4.150 3 C 0.032 3.968 4 H 0.087 0.913 5 C -0.028 4.028 6 O -0.302 6.302 7 C -0.030 4.030 8 C -0.043 4.043 9 N -0.379 5.379 10 C 0.413 3.587 11 O -0.480 6.480 12 N -0.344 5.344 13 C 0.069 3.931 14 C 0.033 3.967 15 C -0.532 4.532 16 H 0.078 0.922 17 C -0.131 4.131 18 N -0.495 5.495 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.240 4.240 24 C -0.252 4.252 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.122 0.878 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.225 0.775 37 H 0.030 0.970 38 H 0.127 0.873 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.821 4.019 5.784 11.288 hybrid contribution 0.993 0.921 -0.518 1.450 sum -7.827 4.940 5.266 10.649 Atomic orbital electron populations 1.22012 0.97351 1.01469 1.00962 1.22004 0.92877 0.93960 1.06205 1.21739 0.79362 0.98090 0.97658 0.91258 1.23256 0.97644 0.84507 0.97383 1.87910 1.20246 1.28412 1.93681 1.22995 0.81472 1.01639 0.96881 1.22216 0.97848 0.85785 0.98481 1.47280 1.05645 1.06205 1.78794 1.15794 0.82170 0.82693 0.78004 1.90794 1.68890 1.31275 1.57055 1.44889 1.04040 1.16091 1.69410 1.20802 0.87441 0.83211 1.01659 1.19323 0.90458 0.94912 0.92004 1.20540 1.14959 1.13081 1.04621 0.92177 1.25017 0.94013 0.96292 0.97796 1.70021 1.18964 1.41010 1.19496 0.86563 0.79079 0.81846 0.80713 1.19798 1.20892 1.21025 1.22949 1.01970 0.94721 1.04410 1.22970 1.04728 1.04506 0.92996 0.93392 0.93078 0.92664 0.87753 0.91460 0.92846 0.88081 0.92765 0.87987 0.88882 0.91167 0.77546 0.97030 0.87286 0.92892 0.91435 0.90291 0.90741 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.66 37.16 0.36 -1.56 16 2 C -0.11 -1.79 3.94 -26.73 -0.11 -1.89 16 3 C 0.14 2.11 3.25 -67.21 -0.22 1.89 16 4 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 5 C 0.05 0.65 5.65 37.53 0.21 0.86 16 6 O -0.38 -5.34 10.74 -35.23 -0.38 -5.72 16 7 C 0.05 0.60 6.98 37.31 0.26 0.86 16 8 C 0.08 1.23 6.64 -3.53 -0.02 1.20 16 9 N -0.64 -11.36 3.01 -170.19 -0.51 -11.87 16 10 C 0.71 15.25 8.13 -86.92 -0.71 14.54 16 11 O -0.60 -14.25 12.09 5.29 0.06 -14.19 16 12 N -0.69 -15.07 4.33 -65.22 -0.28 -15.36 16 13 C 0.19 4.56 4.55 -4.04 -0.02 4.54 16 14 C 0.03 0.79 2.11 -155.66 -0.33 0.46 16 15 C -0.49 -12.33 8.53 -34.44 -0.29 -12.62 16 16 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 17 C 0.07 1.84 5.24 -17.82 -0.09 1.74 16 18 N -0.86 -22.40 9.48 55.43 0.53 -21.87 16 19 Si 0.89 19.80 29.54 -169.99 -5.02 14.78 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 23 C -0.20 -4.34 9.96 -26.70 -0.27 -4.61 16 24 C -0.21 -4.42 9.92 -26.69 -0.26 -4.69 16 25 H 0.05 0.49 6.35 -51.93 -0.33 0.16 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.10 2.01 6.19 -51.93 -0.32 1.69 16 29 H 0.07 1.18 7.37 -51.93 -0.38 0.79 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 1.09 6.79 -51.93 -0.35 0.74 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.43 5.65 -51.93 -0.29 1.14 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.39 8.09 5.65 -40.82 -0.23 7.86 16 37 H 0.01 0.27 8.09 -51.93 -0.42 -0.15 16 38 H 0.11 2.95 6.04 -51.93 -0.31 2.64 16 39 H 0.26 6.75 8.32 -40.82 -0.34 6.42 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.08 1.69 8.14 -51.92 -0.42 1.26 16 42 H 0.07 1.49 8.14 -51.92 -0.42 1.07 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -27.79 332.90 -8.92 -36.70 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -6.84 Total: 11.78 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -1.49 Total: 0.73 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.27 Total: -49.10 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.31 Total: -19.91 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.79 -8.92 -36.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408383662.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.997 kcal (2) G-P(sol) polarization free energy of solvation -27.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds