Wall clock time and date at job start Tue Mar 31 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46820 * 2 1 4 4 H 1.08998 * 109.51300 * 304.89868 * 3 2 1 5 5 C 1.52880 * 109.58213 * 184.88123 * 3 2 1 6 6 N 1.47154 * 108.60883 * 187.92767 * 5 3 2 7 7 C 1.34778 * 120.97577 * 230.50245 * 6 5 3 8 8 O 1.21583 * 120.00705 * 4.94568 * 7 6 5 9 9 N 1.34776 * 119.99549 * 184.94950 * 7 6 5 10 10 C 1.46498 * 120.00339 * 185.05562 * 9 7 6 11 11 C 1.52994 * 109.47422 * 175.17295 * 10 9 7 12 12 C 1.50699 * 115.55236 * 54.61486 * 11 10 9 13 13 H 1.07999 * 119.99730 * 215.33647 * 12 11 10 14 14 C 1.37878 * 119.99836 * 35.61532 * 12 11 10 15 15 N 1.31509 * 119.99932 * 12.06430 * 14 12 11 16 16 Si 1.86797 * 119.99507 * 192.06781 * 14 12 11 17 17 H 1.48493 * 109.47665 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47283 * 119.99956 * 16 14 12 19 19 H 1.48502 * 109.47084 * 239.99881 * 16 14 12 20 20 C 1.53008 * 117.49759 * 200.28506 * 11 10 9 21 21 C 1.53002 * 117.49671 * 268.94032 * 11 10 9 22 22 C 1.47147 * 118.03757 * 50.22590 * 6 5 3 23 23 C 1.53304 * 108.38385 * 309.71526 * 22 6 5 24 24 O 1.42961 * 109.51256 * 65.00312 * 3 2 1 25 25 H 1.09000 * 109.46888 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46697 * 299.99893 * 1 2 3 27 27 H 1.08999 * 109.46978 * 60.00094 * 1 2 3 28 28 H 1.09004 * 109.46940 * 240.00319 * 2 1 3 29 29 H 1.08999 * 109.46978 * 119.99906 * 2 1 3 30 30 H 1.09003 * 109.61861 * 68.10160 * 5 3 2 31 31 H 1.09003 * 109.52288 * 307.68760 * 5 3 2 32 32 H 0.97006 * 120.00497 * 5.05929 * 9 7 6 33 33 H 1.08998 * 109.46772 * 55.16495 * 10 9 7 34 34 H 1.09001 * 109.46836 * 295.17443 * 10 9 7 35 35 H 0.97002 * 119.99527 * 184.98257 * 15 14 12 36 36 H 1.08993 * 117.49857 * 214.99778 * 20 11 10 37 37 H 1.09000 * 117.49603 * 0.02562 * 20 11 10 38 38 H 1.09003 * 117.50009 * 359.97438 * 21 11 10 39 39 H 1.09005 * 117.49827 * 144.99397 * 21 11 10 40 40 H 1.08995 * 109.68235 * 69.43841 * 22 6 5 41 41 H 1.08997 * 109.68183 * 189.95798 * 22 6 5 42 42 H 1.08997 * 109.51147 * 172.22603 * 23 22 6 43 43 H 1.08994 * 109.50979 * 292.38117 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6072 1.9817 -0.8426 5 6 3.5639 1.4473 -0.1226 6 7 4.0462 2.8240 0.0708 7 6 4.8945 3.3919 -0.8092 8 8 5.2021 2.8002 -1.8258 9 7 5.4021 4.6158 -0.5621 10 6 6.2352 5.2800 -1.5676 11 6 6.5793 6.6929 -1.0922 12 6 7.2240 6.7825 0.2669 13 1 7.0008 7.6159 0.9166 14 6 8.1033 5.8035 0.6787 15 7 8.5633 4.9266 -0.1867 16 14 8.6409 5.7228 2.4658 17 1 7.9856 6.8146 3.2297 18 1 8.2495 4.4111 3.0418 19 1 10.1155 5.8787 2.5466 20 6 7.0182 7.7070 -2.1506 21 6 5.6363 7.8256 -1.5029 22 6 3.5701 3.5645 1.2499 23 6 2.0417 3.4585 1.3028 24 8 1.6623 2.0825 1.2213 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 3.8526 1.0927 -1.1120 31 1 3.9927 0.7976 0.6404 32 1 5.2158 5.0569 0.2815 33 1 5.6912 5.3361 -2.5105 34 1 7.1538 4.7112 -1.7114 35 1 9.1240 4.1951 0.1157 36 1 7.7731 8.4389 -1.8637 37 1 7.0613 7.3676 -3.1855 38 1 4.7710 7.5642 -2.1121 39 1 5.4821 8.6356 -0.7899 40 1 3.9996 3.1315 2.1533 41 1 3.8635 4.6111 1.1692 42 1 1.6796 3.8811 2.2399 43 1 1.6097 4.0055 0.4648 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408387903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:41 Heat of formation + Delta-G solvation = -47.574403 kcal Electronic energy + Delta-G solvation = -23382.858266 eV Core-core repulsion = 20043.128076 eV Total energy + Delta-G solvation = -3339.730191 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.13022 -38.37150 -36.71724 -34.58293 -33.99037 -33.02832 -32.20151 -30.05787 -27.82826 -25.90812 -25.20798 -23.93749 -22.56805 -21.25239 -21.00172 -19.33722 -19.06512 -17.80941 -16.71842 -16.26354 -15.62234 -15.48880 -14.94093 -14.87021 -14.63567 -14.04509 -13.89958 -13.76139 -13.40458 -13.23912 -12.95661 -12.71559 -12.06387 -11.83003 -11.74772 -11.62010 -11.42426 -11.12874 -11.10933 -11.04861 -10.80126 -10.54486 -10.52166 -10.29554 -10.02589 -9.67930 -9.28214 -9.20877 -8.83956 -8.38827 -8.18592 -7.74254 -6.11382 -4.20243 3.07121 3.18512 3.29649 3.31074 3.67736 3.88176 4.28783 4.54317 4.67738 4.85601 4.95603 4.98665 5.04486 5.17084 5.22445 5.27896 5.47579 5.50169 5.59281 5.67306 5.76646 5.81117 5.84970 5.95133 6.00072 6.05514 6.17803 6.28662 6.54199 6.59540 6.67454 6.70963 6.89003 7.03837 7.12272 7.26047 7.45666 7.58330 7.65435 7.89506 8.29875 8.70297 8.84195 9.34181 9.41462 10.86963 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020113 B = 0.004900 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.806795 B = 5713.367397 C = 6171.033016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.077 3.923 4 H 0.061 0.939 5 C 0.104 3.896 6 N -0.641 5.641 7 C 0.703 3.297 8 O -0.603 6.603 9 N -0.707 5.707 10 C 0.177 3.823 11 C 0.038 3.962 12 C -0.500 4.500 13 H 0.062 0.938 14 C 0.077 3.923 15 N -0.860 5.860 16 Si 0.884 3.116 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.283 1.283 20 C -0.194 4.194 21 C -0.211 4.211 22 C 0.076 3.924 23 C 0.051 3.949 24 O -0.378 6.378 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.396 0.604 33 H 0.024 0.976 34 H 0.106 0.894 35 H 0.263 0.737 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.360 -5.894 2.963 14.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C 0.019 3.981 4 H 0.079 0.921 5 C -0.020 4.020 6 N -0.381 5.381 7 C 0.405 3.595 8 O -0.483 6.483 9 N -0.360 5.360 10 C 0.053 3.947 11 C 0.037 3.963 12 C -0.537 4.537 13 H 0.080 0.920 14 C -0.128 4.128 15 N -0.496 5.496 16 Si 0.711 3.289 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.233 4.233 21 C -0.249 4.249 22 C -0.048 4.048 23 C -0.026 4.026 24 O -0.296 6.296 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.232 0.768 33 H 0.043 0.957 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.003 -6.500 2.298 14.717 hybrid contribution 0.490 0.451 1.196 1.370 sum -12.512 -6.049 3.494 14.330 Atomic orbital electron populations 1.21696 0.95140 1.01409 1.02257 1.21500 0.96752 0.93944 1.03012 1.22488 0.93908 0.94386 0.87337 0.92054 1.21951 0.93326 0.82909 1.03818 1.47219 1.49881 1.14933 1.26028 1.15888 0.79075 0.81917 0.82668 1.90830 1.65451 1.64057 1.27937 1.45137 1.52835 1.16407 1.21636 1.20875 0.94349 0.93076 0.86358 1.19189 0.96145 0.86447 0.94484 1.20521 1.25092 1.09227 0.98895 0.92014 1.24936 0.94646 0.96051 0.97191 1.69931 1.32083 1.14681 1.32863 0.86668 0.78714 0.78048 0.85463 1.19579 1.20816 1.20937 1.22913 0.96581 1.06277 0.97537 1.22951 0.92775 1.04613 1.04532 1.22276 0.95067 0.98162 0.89262 1.22939 0.93867 0.83183 1.02637 1.87908 1.79716 1.23748 1.38275 0.92791 0.91974 0.92957 0.90298 0.90917 0.88196 0.91616 0.76774 0.95749 0.87599 0.92712 0.90174 0.91491 0.91423 0.90632 0.90960 0.88899 0.87824 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.81 37.16 0.36 -0.95 16 2 C -0.11 -1.12 5.64 -26.73 -0.15 -1.27 16 3 C 0.08 0.96 2.76 -26.79 -0.07 0.88 16 4 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 5 C 0.10 1.53 5.92 -3.75 -0.02 1.51 16 6 N -0.64 -10.97 3.03 -178.26 -0.54 -11.51 16 7 C 0.70 15.09 8.31 -86.92 -0.72 14.37 16 8 O -0.60 -14.95 15.82 5.29 0.08 -14.87 16 9 N -0.71 -15.32 5.20 -65.23 -0.34 -15.66 16 10 C 0.18 4.22 4.80 -4.05 -0.02 4.20 16 11 C 0.04 0.90 1.97 -155.66 -0.31 0.59 16 12 C -0.50 -12.61 8.28 -34.44 -0.29 -12.90 16 13 H 0.06 1.56 7.84 -52.49 -0.41 1.15 16 14 C 0.08 1.97 5.16 -17.82 -0.09 1.87 16 15 N -0.86 -23.26 10.83 55.43 0.60 -22.66 16 16 Si 0.88 19.88 29.56 -169.99 -5.02 14.86 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C -0.19 -4.28 9.96 -26.69 -0.27 -4.54 16 21 C -0.21 -4.37 9.93 -26.69 -0.26 -4.63 16 22 C 0.08 1.06 6.52 -3.53 -0.02 1.04 16 23 C 0.05 0.60 6.99 37.31 0.26 0.86 16 24 O -0.38 -4.82 9.92 -35.23 -0.35 -5.17 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.59 7.82 -51.93 -0.41 0.19 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 1.59 7.06 -51.93 -0.37 1.22 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.40 8.10 5.61 -40.82 -0.23 7.87 16 33 H 0.02 0.58 8.09 -51.93 -0.42 0.16 16 34 H 0.11 2.90 6.02 -51.93 -0.31 2.59 16 35 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 36 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.28 5.88 -51.93 -0.31 0.98 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -29.58 344.22 -9.07 -38.64 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -7.08 Total: 10.14 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.60 Total: 1.04 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.28 Total: -49.83 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.27 Total: -20.03 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.58 -9.07 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408387903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.932 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds