Wall clock time and date at job start Tue Mar 31 2020 06:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52994 * 109.46912 * 2 1 4 4 H 1.08999 * 109.51973 * 54.88977 * 3 2 1 5 5 C 1.53291 * 109.51457 * 174.99910 * 3 2 1 6 6 N 1.47154 * 108.38865 * 172.27162 * 5 3 2 7 7 C 1.34771 * 120.98066 * 129.48678 * 6 5 3 8 8 O 1.21585 * 120.00297 * 354.78533 * 7 6 5 9 9 N 1.34772 * 119.99970 * 174.79035 * 7 6 5 10 10 C 1.46506 * 120.00099 * 185.14108 * 9 7 6 11 11 C 1.53006 * 109.47147 * 184.99919 * 10 9 7 12 12 C 1.50695 * 115.54688 * 275.46209 * 11 10 9 13 13 H 1.08008 * 119.99910 * 115.78090 * 12 11 10 14 14 C 1.37878 * 120.00513 * 295.78285 * 12 11 10 15 15 N 1.31515 * 119.99214 * 352.85549 * 14 12 11 16 16 Si 1.86792 * 120.00411 * 172.85153 * 14 12 11 17 17 H 1.48498 * 109.47203 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47262 * 120.00166 * 16 14 12 19 19 H 1.48505 * 109.47393 * 240.00112 * 16 14 12 20 20 C 1.52995 * 117.49812 * 129.75442 * 11 10 9 21 21 C 1.52998 * 117.49747 * 61.13200 * 11 10 9 22 22 C 1.47146 * 118.03429 * 309.46514 * 6 5 3 23 23 C 1.53300 * 108.38751 * 50.53685 * 22 6 5 24 24 O 1.42972 * 109.26044 * 307.66807 * 23 22 6 25 25 H 1.09000 * 109.47435 * 300.00292 * 1 2 3 26 26 H 1.08996 * 109.46943 * 60.00846 * 1 2 3 27 27 H 1.09005 * 109.46850 * 180.02562 * 1 2 3 28 28 H 1.08989 * 109.47090 * 239.99431 * 2 1 3 29 29 H 1.09002 * 109.46567 * 119.99346 * 2 1 3 30 30 H 1.09007 * 109.68209 * 52.55073 * 5 3 2 31 31 H 1.09000 * 109.71415 * 292.01659 * 5 3 2 32 32 H 0.97006 * 120.00291 * 5.13370 * 9 7 6 33 33 H 1.09000 * 109.46819 * 304.99364 * 10 9 7 34 34 H 1.08993 * 109.47163 * 64.99841 * 10 9 7 35 35 H 0.97007 * 119.99278 * 185.00129 * 15 14 12 36 36 H 1.08998 * 117.50396 * 0.02562 * 20 11 10 37 37 H 1.08999 * 117.49496 * 145.01744 * 20 11 10 38 38 H 1.09005 * 117.49424 * 214.97613 * 21 11 10 39 39 H 1.08994 * 117.50170 * 359.97438 * 21 11 10 40 40 H 1.08995 * 109.68733 * 290.80679 * 22 6 5 41 41 H 1.09000 * 109.71064 * 170.27305 * 22 6 5 42 42 H 1.09000 * 109.51234 * 67.61769 * 23 22 6 43 43 H 1.08999 * 109.51243 * 187.72332 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6043 1.9828 0.8404 5 6 3.5678 1.4455 0.1260 6 7 4.0464 2.8241 -0.0633 7 6 4.8917 3.3923 0.8193 8 8 5.1955 2.8010 1.8373 9 7 5.4001 4.6160 0.5736 10 6 6.4046 5.1864 1.4748 11 6 6.7201 6.6204 1.0446 12 6 7.7541 6.7602 -0.0427 13 1 7.4773 7.1736 -1.0013 14 6 9.0536 6.3603 0.1862 15 7 9.4246 5.9891 1.3922 16 14 10.2872 6.3455 -1.2164 17 1 9.6244 6.8047 -2.4634 18 1 11.4158 7.2547 -0.8926 19 1 10.8023 4.9659 -1.4082 20 6 6.6745 7.7070 2.1207 21 6 5.5723 7.6319 1.0622 22 6 3.5752 3.5637 -1.2448 23 6 2.0470 3.4577 -1.3040 24 8 1.6663 2.0819 -1.2240 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 4.0004 0.7987 -0.6374 31 1 3.8559 1.0894 1.1150 32 1 5.1011 5.1191 -0.2000 33 1 6.0183 5.1895 2.4940 34 1 7.3134 4.5861 1.4324 35 1 10.3544 5.7775 1.5698 36 1 6.4201 7.4003 3.1353 37 1 7.3927 8.5232 2.0425 38 1 5.5654 8.3988 0.2876 39 1 4.5924 7.2757 1.3798 40 1 4.0085 3.1304 -2.1462 41 1 3.8676 4.6107 -1.1639 42 1 1.6114 4.0052 -0.4683 43 1 1.6888 3.8805 -2.2427 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408387905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:44 Heat of formation + Delta-G solvation = -49.984488 kcal Electronic energy + Delta-G solvation = -23005.599649 eV Core-core repulsion = 19665.764950 eV Total energy + Delta-G solvation = -3339.834700 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.27899 -38.51719 -36.75638 -34.72848 -34.08762 -33.18350 -32.07202 -30.15558 -27.96367 -26.11083 -25.12245 -24.03698 -22.69116 -21.31969 -21.05943 -19.41695 -19.24326 -17.95085 -16.79690 -16.25155 -15.77859 -15.57331 -15.03143 -14.91715 -14.64996 -14.10680 -14.04227 -13.87506 -13.47147 -13.39697 -13.18585 -12.69771 -12.14329 -11.94594 -11.76281 -11.56159 -11.52350 -11.21732 -11.17526 -11.01746 -10.92929 -10.64581 -10.53280 -10.32960 -10.14021 -9.74204 -9.47131 -9.06080 -8.63590 -8.52287 -8.24113 -7.97241 -6.10224 -4.17152 2.89692 3.24158 3.33465 3.35175 3.58105 3.67028 4.32629 4.35982 4.56557 4.76094 4.89879 4.92410 5.02978 5.11515 5.12860 5.17319 5.35263 5.41294 5.49526 5.58499 5.66179 5.72474 5.76343 5.85984 5.97237 5.98038 6.11744 6.28265 6.44540 6.53714 6.59343 6.65868 6.85806 7.01620 7.02461 7.27504 7.29813 7.47058 7.51552 7.82525 8.32276 8.50586 8.82529 9.11066 9.47950 10.97504 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024298 B = 0.004016 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.061688 B = 6970.796953 C = 7164.810823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.077 3.923 4 H 0.062 0.938 5 C 0.103 3.897 6 N -0.640 5.640 7 C 0.703 3.297 8 O -0.597 6.597 9 N -0.725 5.725 10 C 0.180 3.820 11 C 0.035 3.965 12 C -0.500 4.500 13 H 0.061 0.939 14 C 0.072 3.928 15 N -0.874 5.874 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.165 4.165 21 C -0.209 4.209 22 C 0.077 3.923 23 C 0.050 3.950 24 O -0.377 6.377 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.392 0.608 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.262 0.738 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.054 0.946 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.354 -7.223 -5.000 17.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C 0.018 3.982 4 H 0.080 0.920 5 C -0.021 4.021 6 N -0.379 5.379 7 C 0.405 3.595 8 O -0.476 6.476 9 N -0.379 5.379 10 C 0.057 3.943 11 C 0.034 3.966 12 C -0.537 4.537 13 H 0.079 0.921 14 C -0.132 4.132 15 N -0.510 5.510 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.204 4.204 21 C -0.246 4.246 22 C -0.047 4.047 23 C -0.027 4.027 24 O -0.295 6.295 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.228 0.772 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.073 0.927 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.999 -7.854 -4.275 17.463 hybrid contribution 0.859 0.561 -0.871 1.346 sum -14.141 -7.293 -5.146 16.722 Atomic orbital electron populations 1.21700 0.95098 1.01480 1.02265 1.21500 0.96799 0.93871 1.03066 1.22595 0.93813 0.94491 0.87281 0.91961 1.22079 0.93404 0.82615 1.03985 1.47261 1.50335 1.14865 1.25489 1.15928 0.78906 0.81965 0.82739 1.90865 1.65188 1.64463 1.27097 1.45476 1.44759 1.16342 1.31329 1.20918 0.89257 0.94702 0.89444 1.19085 0.94197 0.86144 0.97144 1.20465 0.92878 1.42579 0.97799 0.92080 1.24992 0.98328 0.94367 0.95518 1.69974 1.16970 1.44394 1.19617 0.86555 0.81230 0.77755 0.82578 1.19718 1.20995 1.20896 1.22719 1.00325 1.04137 0.93181 1.22875 0.93110 1.05291 1.03316 1.22282 0.95258 0.97907 0.89239 1.22944 0.93728 0.83325 1.02739 1.87945 1.79819 1.23680 1.38091 0.92941 0.91969 0.92738 0.90869 0.90254 0.91337 0.88100 0.77210 0.94281 0.90248 0.92777 0.91596 0.89964 0.90394 0.91532 0.90677 0.89137 0.92736 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.81 37.16 0.36 -0.85 16 2 C -0.11 -1.03 5.65 -26.73 -0.15 -1.18 16 3 C 0.08 0.87 2.77 -26.58 -0.07 0.79 16 4 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 5 C 0.10 1.39 5.94 -3.53 -0.02 1.36 16 6 N -0.64 -9.91 3.02 -178.01 -0.54 -10.45 16 7 C 0.70 14.00 8.31 -86.93 -0.72 13.28 16 8 O -0.60 -14.09 15.79 5.29 0.08 -14.01 16 9 N -0.72 -14.47 5.37 -65.22 -0.35 -14.82 16 10 C 0.18 4.23 5.52 -4.04 -0.02 4.21 16 11 C 0.04 0.83 1.34 -155.66 -0.21 0.62 16 12 C -0.50 -12.93 8.83 -34.44 -0.30 -13.23 16 13 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 14 C 0.07 1.92 5.22 -17.82 -0.09 1.83 16 15 N -0.87 -24.35 12.48 55.43 0.69 -23.66 16 16 Si 0.89 20.62 29.55 -169.99 -5.02 15.59 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.17 -3.72 9.88 -26.73 -0.26 -3.98 16 21 C -0.21 -4.22 9.77 -26.73 -0.26 -4.49 16 22 C 0.08 0.93 6.57 -3.53 -0.02 0.91 16 23 C 0.05 0.52 6.98 37.31 0.26 0.78 16 24 O -0.38 -4.38 9.94 -35.23 -0.35 -4.73 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.55 7.83 -51.93 -0.41 0.15 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.64 8.14 -51.94 -0.42 0.22 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.10 1.49 7.06 -51.93 -0.37 1.12 16 32 H 0.39 6.96 5.96 -40.82 -0.24 6.72 16 33 H 0.04 0.94 7.86 -51.93 -0.41 0.53 16 34 H 0.08 2.16 7.14 -51.93 -0.37 1.79 16 35 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 36 H 0.07 1.42 8.06 -51.93 -0.42 1.01 16 37 H 0.08 1.92 8.14 -51.93 -0.42 1.49 16 38 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 1.05 5.78 -51.93 -0.30 0.75 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 347.61 15.07 5.24 5.24 Total: -1.00 -30.59 347.61 -8.90 -39.49 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.13 Total: 7.28 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.52 Total: 0.05 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.20 Total: -48.92 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.27 Total: -18.74 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.59 -8.90 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408387905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.495 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds