Wall clock time and date at job start Tue Mar 31 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47243 * 2 1 4 4 N 1.46496 * 109.47161 * 179.97438 * 3 2 1 5 5 C 1.46758 * 124.34931 * 90.00179 * 4 3 2 6 6 C 1.54479 * 105.47554 * 163.00233 * 5 4 3 7 7 H 1.08999 * 110.97155 * 267.25634 * 6 5 4 8 8 C 1.50702 * 110.96974 * 143.53105 * 6 5 4 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 6 5 10 10 N 1.34777 * 119.99928 * 179.72392 * 8 6 5 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 6 12 12 C 1.52997 * 109.47555 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47273 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46983 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00145 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00161 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00374 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99796 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47429 * 89.99359 * 18 16 14 20 20 H 1.48498 * 109.47116 * 209.99875 * 18 16 14 21 21 H 1.48503 * 109.46936 * 329.99405 * 18 16 14 22 22 C 1.54627 * 101.76294 * 25.41661 * 6 5 4 23 23 C 1.34415 * 124.35079 * 270.02162 * 4 3 2 24 24 O 1.21286 * 124.94112 * 0.42685 * 23 4 3 25 25 H 1.08996 * 109.47348 * 300.00310 * 1 2 3 26 26 H 1.08998 * 109.47033 * 60.00076 * 1 2 3 27 27 H 1.08997 * 109.47076 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47348 * 239.99690 * 2 1 3 29 29 H 1.08998 * 109.47033 * 119.99924 * 2 1 3 30 30 H 1.09004 * 109.47456 * 59.99808 * 3 2 1 31 31 H 1.08998 * 109.47044 * 299.99917 * 3 2 1 32 32 H 1.09004 * 110.24884 * 44.00428 * 5 4 3 33 33 H 1.09007 * 110.24556 * 282.00251 * 5 4 3 34 34 H 0.97000 * 120.00317 * 0.28382 * 10 8 6 35 35 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 36 36 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 37 37 H 1.08998 * 109.47382 * 300.00439 * 12 11 10 38 38 H 1.09005 * 109.46800 * 60.00640 * 12 11 10 39 39 H 1.08992 * 109.47143 * 300.00104 * 13 12 11 40 40 H 1.08997 * 109.46799 * 60.00311 * 13 12 11 41 41 H 0.96990 * 120.00275 * 179.97438 * 17 16 14 42 42 H 1.09002 * 110.48865 * 93.88061 * 22 6 5 43 43 H 1.09008 * 110.48831 * 216.52421 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3336 1.4423 -1.2107 6 6 5.7414 1.8776 -0.7471 7 1 5.8679 2.9559 -0.8437 8 6 6.8122 1.1412 -1.5103 9 8 6.5040 0.3317 -2.3592 10 7 8.1123 1.3868 -1.2538 11 6 9.1532 0.6755 -1.9999 12 6 10.5307 1.1352 -1.5182 13 6 11.6177 0.3918 -2.2969 14 6 12.9744 0.8442 -1.8219 15 1 13.0535 1.5873 -1.0422 16 6 14.1149 0.3095 -2.3827 17 7 15.2989 0.7039 -1.9678 18 14 13.9783 -0.9753 -3.7318 19 1 13.9425 -0.3020 -5.0548 20 1 15.1510 -1.8842 -3.6704 21 1 12.7325 -1.7612 -3.5425 22 6 5.7295 1.4519 0.7393 23 6 4.2630 1.4422 1.1107 24 8 3.8337 1.4345 2.2450 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9395 2.1527 -1.9375 33 1 4.3710 0.4419 -1.6420 34 1 8.3589 2.0345 -0.5751 35 1 9.0501 -0.3970 -1.8347 36 1 9.0494 0.8907 -3.0634 37 1 10.6340 2.2077 -1.6831 38 1 10.6342 0.9194 -0.4547 39 1 11.5142 -0.6805 -2.1315 40 1 11.5143 0.6070 -3.3604 41 1 16.1012 0.3274 -2.3620 42 1 6.1588 0.4566 0.8546 43 1 6.2723 2.1753 1.3478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412013128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:20 Heat of formation + Delta-G solvation = -95.055871 kcal Electronic energy + Delta-G solvation = -21593.779431 eV Core-core repulsion = 18251.990290 eV Total energy + Delta-G solvation = -3341.789142 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.10274 -39.39528 -36.71255 -35.67894 -35.11518 -33.41828 -32.05689 -31.25854 -28.13153 -27.51795 -26.46673 -23.89367 -22.37686 -22.13031 -20.80443 -19.93851 -19.64538 -17.77418 -17.15295 -16.81265 -16.19726 -15.86866 -15.49016 -15.32290 -14.96690 -14.41445 -14.22951 -14.16013 -13.92023 -13.62228 -13.31955 -13.10429 -12.74808 -12.54590 -12.20969 -12.13489 -11.98317 -11.85302 -11.75119 -11.63605 -11.14962 -11.10262 -10.93994 -10.40594 -10.14464 -10.01078 -9.83084 -9.64440 -9.27131 -9.06251 -9.00012 -8.59097 -6.09635 -4.08741 2.26424 2.44649 2.58697 3.12057 3.28276 3.36263 3.39701 3.89582 4.00944 4.41002 4.44572 4.49056 4.56769 4.61428 4.86125 4.86173 5.01793 5.10656 5.20828 5.21887 5.24218 5.36906 5.38462 5.46737 5.56174 5.58250 5.63634 5.70598 5.84825 5.93154 6.18872 6.22709 6.36985 6.58933 6.72000 6.74907 7.17253 7.30754 7.45109 7.72193 7.84101 8.11291 8.46363 8.94008 9.52341 11.03516 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038242 B = 0.002520 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.010525 B =11107.370197 C =11508.609621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.126 3.874 4 N -0.620 5.620 5 C 0.117 3.883 6 C -0.125 4.125 7 H 0.118 0.882 8 C 0.521 3.479 9 O -0.539 6.539 10 N -0.720 5.720 11 C 0.113 3.887 12 C -0.114 4.114 13 C -0.011 4.011 14 C -0.523 4.523 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.902 5.902 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.145 4.145 23 C 0.521 3.479 24 O -0.530 6.530 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.402 0.598 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.019 0.981 40 H 0.014 0.986 41 H 0.264 0.736 42 H 0.111 0.889 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.984 3.067 2.362 27.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.005 3.995 4 N -0.354 5.354 5 C -0.007 4.007 6 C -0.147 4.147 7 H 0.136 0.864 8 C 0.305 3.695 9 O -0.416 6.416 10 N -0.370 5.370 11 C -0.010 4.010 12 C -0.152 4.152 13 C -0.049 4.049 14 C -0.561 4.561 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.541 5.541 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.186 4.186 23 C 0.308 3.692 24 O -0.407 6.407 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.236 0.764 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.129 0.871 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -27.299 2.450 2.309 27.506 hybrid contribution 0.350 -0.323 -0.503 0.693 sum -26.949 2.126 1.806 27.093 Atomic orbital electron populations 1.21689 0.94904 1.02156 1.01940 1.21929 0.96335 0.97045 1.02914 1.21463 0.77543 0.97278 1.03228 1.48348 1.06373 1.73402 1.07260 1.22002 0.87799 1.03989 0.86867 1.22255 0.94641 1.02452 0.95337 0.86375 1.20013 0.83499 0.82730 0.83245 1.90719 1.82156 1.35134 1.33609 1.46142 1.05600 1.44136 1.41125 1.21706 0.86839 0.96497 0.95918 1.21713 0.91713 1.00892 1.00861 1.19501 0.94223 0.95835 0.95347 1.21085 0.88632 1.24512 1.21878 0.90995 1.25037 0.95293 0.96464 0.96726 1.69906 0.97542 1.43671 1.42958 0.86772 0.77911 0.82059 0.82523 1.20248 1.21355 1.18917 1.22356 0.95556 1.05686 0.94956 1.20768 0.88928 0.75080 0.84406 1.90738 1.78506 1.50348 1.21062 0.92478 0.92523 0.92316 0.91495 0.91514 0.89930 0.90200 0.89702 0.88883 0.76398 0.91622 0.91586 0.92042 0.92002 0.96310 0.96744 0.92664 0.87122 0.86919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.14 -1.06 6.26 -26.73 -0.17 -1.23 16 3 C 0.13 0.94 5.93 -4.04 -0.02 0.91 16 4 N -0.62 -5.51 2.93 -172.42 -0.51 -6.02 16 5 C 0.12 0.93 6.71 -3.13 -0.02 0.91 16 6 C -0.12 -0.98 3.54 -90.14 -0.32 -1.30 16 7 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 8 C 0.52 5.97 7.06 -10.98 -0.08 5.90 16 9 O -0.54 -8.24 15.50 5.55 0.09 -8.16 16 10 N -0.72 -8.23 5.56 -60.29 -0.33 -8.56 16 11 C 0.11 1.68 5.67 -4.04 -0.02 1.66 16 12 C -0.11 -1.98 5.27 -26.73 -0.14 -2.12 16 13 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 14 C -0.52 -14.40 9.66 -34.44 -0.33 -14.73 16 15 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 16 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 17 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 18 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 22 C -0.15 -1.20 6.41 -26.74 -0.17 -1.37 16 23 C 0.52 5.68 8.02 -10.86 -0.09 5.59 16 24 O -0.53 -7.76 17.59 5.55 0.10 -7.66 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.90 6.96 -51.93 -0.36 0.54 16 34 H 0.40 3.54 8.47 -40.82 -0.35 3.20 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 40 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.11 0.97 7.89 -51.93 -0.41 0.56 16 43 H 0.11 0.74 8.14 -51.92 -0.42 0.32 16 LS Contribution 355.89 15.07 5.36 5.36 Total: -1.00 -34.10 355.89 -7.77 -41.88 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -7.38 Total: -2.12 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.21 Total: -4.83 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: -0.07 Total: -41.15 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.18 Total: -15.82 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.10 -7.77 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412013128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.179 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds