Wall clock time and date at job start Tue Mar 31 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46507 * 109.47485 * 179.97438 * 3 2 1 5 5 C 1.46762 * 124.35022 * 269.72808 * 4 3 2 6 6 C 1.54306 * 105.56055 * 196.88537 * 5 4 3 7 7 H 1.08997 * 110.74593 * 93.00007 * 6 5 4 8 8 C 1.50702 * 111.14470 * 216.69165 * 6 5 4 9 9 O 1.21275 * 120.00330 * 354.03514 * 8 6 5 10 10 N 1.34782 * 119.99461 * 174.02995 * 8 6 5 11 11 C 1.46504 * 119.99479 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.46871 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47185 * 179.97438 * 12 11 10 14 14 C 1.50708 * 109.47148 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99989 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99944 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99860 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99873 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47106 * 90.00258 * 18 16 14 20 20 H 1.48506 * 109.46733 * 209.99821 * 18 16 14 21 21 H 1.48499 * 109.46968 * 329.99569 * 18 16 14 22 22 C 1.54627 * 101.84239 * 334.93566 * 6 5 4 23 23 C 1.34414 * 124.34520 * 90.02490 * 4 3 2 24 24 O 1.21283 * 124.94686 * 359.57723 * 23 4 3 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08998 * 110.24641 * 316.01500 * 5 4 3 33 33 H 1.08994 * 110.24375 * 78.01464 * 5 4 3 34 34 H 0.96994 * 120.00303 * 0.02562 * 10 8 6 35 35 H 1.08996 * 109.47137 * 300.00076 * 11 10 8 36 36 H 1.08999 * 109.47186 * 60.00431 * 11 10 8 37 37 H 1.09002 * 109.47040 * 300.00262 * 12 11 10 38 38 H 1.09002 * 109.47086 * 59.99580 * 12 11 10 39 39 H 1.09002 * 109.47425 * 300.00124 * 13 12 11 40 40 H 1.08999 * 109.46949 * 60.00122 * 13 12 11 41 41 H 0.97008 * 119.99994 * 179.97438 * 17 16 14 42 42 H 1.09004 * 110.48453 * 265.90411 * 22 6 5 43 43 H 1.09001 * 110.59557 * 143.31958 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.3327 1.4483 1.2126 6 6 5.7408 1.8778 0.7503 7 1 5.8666 2.9562 0.8467 8 6 6.8117 1.1422 1.5140 9 8 6.5083 0.4163 2.4369 10 7 8.1066 1.2911 1.1712 11 6 9.1476 0.5755 1.9132 12 6 10.5186 0.9176 1.3265 13 6 11.6059 0.1709 2.1018 14 6 12.9563 0.5073 1.5235 15 1 13.0315 1.1862 0.6870 16 6 14.0957 -0.0516 2.0625 17 7 14.0040 -0.8779 3.0815 18 14 15.7695 0.3660 1.3461 19 1 16.3232 1.5553 2.0422 20 1 16.6878 -0.7867 1.5291 21 1 15.6283 0.6613 -0.1024 22 6 5.7301 1.4527 -0.7364 23 6 4.2639 1.4427 -1.1089 24 8 3.8355 1.4357 -2.2435 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.9377 2.1621 1.9356 33 1 4.3700 0.4501 1.6487 34 1 8.3493 1.8719 0.4332 35 1 9.1167 0.8735 2.9612 36 1 8.9764 -0.4981 1.8355 37 1 10.5498 0.6200 0.2784 38 1 10.6896 1.9913 1.4045 39 1 11.5745 0.4689 3.1499 40 1 11.4351 -0.9028 2.0242 41 1 14.8056 -1.2714 3.4604 42 1 6.1598 0.4576 -0.8517 43 1 6.2736 2.1748 -1.3456 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412013129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:23 Heat of formation + Delta-G solvation = -98.787400 kcal Electronic energy + Delta-G solvation = -21556.487769 eV Core-core repulsion = 18214.536817 eV Total energy + Delta-G solvation = -3341.950953 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.06664 -39.33148 -36.68063 -35.55745 -35.09379 -33.40598 -32.01758 -31.01282 -28.05947 -27.22429 -26.30354 -23.90535 -22.50077 -22.11450 -20.79628 -19.94920 -19.61392 -17.69104 -17.11627 -16.48130 -16.16952 -15.74637 -15.39521 -15.21020 -14.92294 -14.48425 -14.33845 -14.12871 -13.87584 -13.59422 -13.28114 -13.03547 -12.52294 -12.33345 -12.17036 -12.00890 -11.86963 -11.73156 -11.70299 -11.59428 -11.07809 -10.93564 -10.79658 -10.63378 -10.27996 -9.92583 -9.89959 -9.44040 -9.16120 -9.03214 -8.91041 -8.40631 -6.05228 -4.08509 2.29219 2.52677 2.60924 3.19152 3.28638 3.35345 3.38100 3.93047 4.03757 4.41288 4.49052 4.52323 4.59291 4.64566 4.88625 4.92186 5.04329 5.13939 5.23317 5.24738 5.30684 5.39522 5.41897 5.58324 5.64628 5.66323 5.69886 5.73014 5.87283 6.08453 6.21679 6.35494 6.52626 6.73909 6.77573 6.93837 7.53662 7.59122 7.70977 7.86639 7.93057 8.18902 8.34151 8.98115 9.55977 11.05969 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040229 B = 0.002409 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.855612 B =11619.478572 C =11977.703853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.620 5.620 5 C 0.118 3.882 6 C -0.125 4.125 7 H 0.118 0.882 8 C 0.520 3.480 9 O -0.538 6.538 10 N -0.720 5.720 11 C 0.115 3.885 12 C -0.121 4.121 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.147 4.147 23 C 0.521 3.479 24 O -0.531 6.531 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.400 0.600 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.111 0.889 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.745 6.565 -4.938 25.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.005 3.995 4 N -0.354 5.354 5 C -0.006 4.006 6 C -0.147 4.147 7 H 0.136 0.864 8 C 0.304 3.696 9 O -0.415 6.415 10 N -0.370 5.370 11 C -0.007 4.007 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.187 4.187 23 C 0.308 3.692 24 O -0.407 6.407 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.234 0.766 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.129 0.871 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -24.144 5.918 -4.738 25.306 hybrid contribution 1.205 0.454 -0.544 1.398 sum -22.938 6.372 -5.281 24.386 Atomic orbital electron populations 1.21689 0.94912 1.02154 1.01923 1.21927 0.96324 0.97042 1.02932 1.21462 0.77553 0.97285 1.03204 1.48356 1.06374 1.73380 1.07274 1.21948 0.87853 1.03967 0.86792 1.22221 0.94694 1.02515 0.95225 0.86353 1.19998 0.83488 0.81979 0.84106 1.90724 1.82081 1.38826 1.29915 1.46191 1.06083 1.48534 1.36230 1.21700 0.86695 0.96418 0.95896 1.21897 0.92668 1.01057 1.00313 1.19031 0.91594 0.95455 0.95325 1.21196 0.91325 1.27402 1.16213 0.92625 1.25035 0.99348 0.95085 0.95034 1.69965 1.28997 1.30538 1.23738 0.86576 0.83908 0.77933 0.79464 1.20653 1.21198 1.19879 1.22373 0.95549 1.05713 0.95082 1.20769 0.88940 0.75068 0.84408 1.90735 1.78567 1.50392 1.21027 0.92505 0.92516 0.92312 0.91471 0.91516 0.89955 0.90206 0.89651 0.89022 0.76585 0.91574 0.91598 0.92635 0.92661 0.96273 0.96264 0.92902 0.87083 0.86969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.14 -1.09 6.26 -26.74 -0.17 -1.26 16 3 C 0.13 0.97 5.93 -4.04 -0.02 0.94 16 4 N -0.62 -5.68 2.93 -172.53 -0.51 -6.18 16 5 C 0.12 0.99 6.68 -3.22 -0.02 0.96 16 6 C -0.12 -1.03 3.53 -90.23 -0.32 -1.35 16 7 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 8 C 0.52 6.31 7.07 -10.98 -0.08 6.23 16 9 O -0.54 -8.65 15.58 5.56 0.09 -8.57 16 10 N -0.72 -8.77 5.51 -60.29 -0.33 -9.10 16 11 C 0.12 1.85 5.67 -4.04 -0.02 1.83 16 12 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 13 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 14 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 15 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 18 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 22 C -0.15 -1.25 6.37 -26.74 -0.17 -1.42 16 23 C 0.52 5.79 8.02 -10.86 -0.09 5.71 16 24 O -0.53 -7.86 17.60 5.55 0.10 -7.76 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.68 7.93 -51.93 -0.41 0.27 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.92 7.05 -51.93 -0.37 0.55 16 34 H 0.40 3.77 8.47 -40.82 -0.35 3.43 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.11 1.00 7.89 -51.93 -0.41 0.59 16 43 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -33.64 359.53 -8.15 -41.78 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -7.42 Total: -2.16 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -1.21 Total: -3.92 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: -0.10 Total: -40.98 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: 0.18 Total: -16.33 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.64 -8.15 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412013129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.005 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds