Wall clock time and date at job start Tue Mar 31 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46764 * 2 1 4 4 N 1.46497 * 109.47044 * 179.97438 * 3 2 1 5 5 C 1.46764 * 124.35505 * 270.05147 * 4 3 2 6 6 C 1.54481 * 105.47685 * 196.99711 * 5 4 3 7 7 H 1.09000 * 111.00335 * 92.71290 * 6 5 4 8 8 C 1.50696 * 110.96851 * 216.46495 * 6 5 4 9 9 O 1.21278 * 120.00155 * 18.52974 * 8 6 5 10 10 N 1.34776 * 119.99900 * 198.53034 * 8 6 5 11 11 C 1.46500 * 120.00246 * 185.12024 * 10 8 6 12 12 C 1.53004 * 109.46979 * 269.42865 * 11 10 8 13 13 C 1.46500 * 120.00197 * 5.11581 * 10 8 6 14 14 C 1.50704 * 109.47171 * 270.00504 * 13 10 8 15 15 H 1.08002 * 119.99744 * 359.97438 * 14 13 10 16 16 C 1.37877 * 120.00163 * 180.02562 * 14 13 10 17 17 N 1.31517 * 119.99519 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00065 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47011 * 89.99914 * 18 16 14 20 20 H 1.48503 * 109.46569 * 209.99669 * 18 16 14 21 21 H 1.48491 * 109.46959 * 329.99561 * 18 16 14 22 22 C 1.54628 * 101.76186 * 334.58254 * 6 5 4 23 23 C 1.34419 * 124.34753 * 90.02912 * 4 3 2 24 24 O 1.21285 * 124.94130 * 359.65092 * 23 4 3 25 25 H 1.08997 * 109.47633 * 59.99809 * 1 2 3 26 26 H 1.09005 * 109.46957 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47312 * 299.98966 * 1 2 3 28 28 H 1.08993 * 109.46858 * 240.00584 * 2 1 3 29 29 H 1.08997 * 109.47633 * 120.00191 * 2 1 3 30 30 H 1.09007 * 109.47018 * 60.00575 * 3 2 1 31 31 H 1.08997 * 109.47202 * 300.00455 * 3 2 1 32 32 H 1.08995 * 110.24351 * 77.99083 * 5 4 3 33 33 H 1.08999 * 110.24234 * 315.99481 * 5 4 3 34 34 H 1.08998 * 109.47444 * 149.42168 * 11 10 8 35 35 H 1.09008 * 109.46984 * 29.42258 * 11 10 8 36 36 H 1.08994 * 109.47425 * 55.64262 * 12 11 10 37 37 H 1.09001 * 109.47204 * 175.64878 * 12 11 10 38 38 H 1.08998 * 109.46448 * 295.64571 * 12 11 10 39 39 H 1.09004 * 109.47058 * 29.99818 * 13 10 8 40 40 H 1.08990 * 109.47428 * 150.00262 * 13 10 8 41 41 H 0.97001 * 119.99553 * 180.02562 * 17 16 14 42 42 H 1.09006 * 110.48573 * 143.47911 * 22 6 5 43 43 H 1.08996 * 110.48859 * 265.98497 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.3326 1.4417 1.2126 6 6 5.7408 1.8774 0.7504 7 1 5.8675 2.9556 0.8470 8 6 6.8109 1.1407 1.5140 9 8 6.5392 0.1159 2.1029 10 7 8.0699 1.6207 1.5425 11 6 9.1338 0.8486 2.1891 12 6 9.2332 1.2514 3.6619 13 6 8.3747 2.9146 0.9267 14 6 8.7554 2.7069 -0.5166 15 1 8.7693 1.7106 -0.9333 16 6 9.0869 3.7886 -1.3047 17 7 9.0704 5.0017 -0.7970 18 14 9.5594 3.5310 -3.0935 19 1 8.3426 3.6012 -3.9419 20 1 10.5151 4.5885 -3.5101 21 1 10.1961 2.1987 -3.2503 22 6 5.7300 1.4526 -0.7364 23 6 4.2637 1.4430 -1.1089 24 8 3.8353 1.4374 -2.2435 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6765 1.9564 -0.8899 32 1 4.3696 0.4412 1.6433 33 1 3.9378 2.1516 1.9394 34 1 10.0828 1.0505 1.6923 35 1 8.9056 -0.2149 2.1180 36 1 8.2625 1.1221 4.1403 37 1 9.9710 0.6234 4.1613 38 1 9.5371 2.2957 3.7331 39 1 7.4972 3.5589 0.9818 40 1 9.2035 3.3833 1.4572 41 1 9.3032 5.7627 -1.3515 42 1 6.2733 2.1764 -1.3439 43 1 6.1616 0.4584 -0.8523 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412171172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:30 Heat of formation + Delta-G solvation = -83.409042 kcal Electronic energy + Delta-G solvation = -23263.052359 eV Core-core repulsion = 19921.768262 eV Total energy + Delta-G solvation = -3341.284097 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48461 -38.86971 -36.14485 -35.31881 -34.65233 -32.84173 -31.54775 -30.15921 -27.42269 -27.06549 -26.23969 -23.70240 -23.11675 -21.82501 -21.39481 -19.19164 -18.27756 -16.99556 -16.65216 -16.43529 -15.60726 -15.57420 -14.95756 -14.58119 -14.44219 -14.16488 -13.69624 -13.48576 -13.31787 -13.04791 -12.73281 -12.55787 -12.39090 -12.18078 -12.05212 -11.79037 -11.62541 -11.50470 -11.40612 -11.05555 -10.95617 -10.93725 -10.76255 -10.67990 -10.50088 -10.13720 -9.80886 -9.58585 -9.10680 -8.59177 -8.48960 -7.83155 -6.23865 -4.31375 2.89608 3.10486 3.23150 3.23603 3.30918 3.34559 3.80180 4.30116 4.63943 4.80568 4.91865 4.98309 5.10532 5.16889 5.18115 5.33816 5.39086 5.50877 5.57780 5.64385 5.70157 5.74361 5.77431 5.83845 5.88962 5.96783 6.03269 6.18332 6.20975 6.30018 6.35198 6.48234 6.58967 6.70964 6.74959 7.10712 7.32246 7.43621 7.70507 7.98148 8.22289 8.45904 8.71262 8.87691 9.37048 10.82687 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014312 B = 0.005880 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.972299 B = 4760.935145 C = 6253.887057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.127 3.873 4 N -0.622 5.622 5 C 0.115 3.885 6 C -0.114 4.114 7 H 0.117 0.883 8 C 0.528 3.472 9 O -0.572 6.572 10 N -0.589 5.589 11 C 0.115 3.885 12 C -0.163 4.163 13 C 0.235 3.765 14 C -0.539 4.539 15 H 0.063 0.937 16 C 0.068 3.932 17 N -0.889 5.889 18 Si 0.891 3.109 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.131 4.131 23 C 0.522 3.478 24 O -0.538 6.538 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.038 0.962 40 H 0.037 0.963 41 H 0.266 0.734 42 H 0.127 0.873 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.049 -5.123 5.921 11.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.005 3.995 4 N -0.356 5.356 5 C -0.008 4.008 6 C -0.136 4.136 7 H 0.135 0.865 8 C 0.315 3.685 9 O -0.453 6.453 10 N -0.318 5.318 11 C -0.008 4.008 12 C -0.221 4.221 13 C 0.116 3.884 14 C -0.577 4.577 15 H 0.081 0.919 16 C -0.135 4.135 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.171 4.171 23 C 0.311 3.689 24 O -0.415 6.415 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.145 0.855 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.412 -5.422 5.585 12.214 hybrid contribution 0.459 0.154 -0.964 1.079 sum -8.952 -5.268 4.621 11.369 Atomic orbital electron populations 1.21688 0.95226 1.01834 1.01829 1.21927 0.95969 0.97444 1.02808 1.21383 0.78356 0.96833 1.02895 1.48336 1.05887 1.73820 1.07564 1.22054 0.88884 1.03183 0.86724 1.22115 0.92984 1.02915 0.95562 0.86508 1.19892 0.83701 0.84675 0.80256 1.90593 1.81886 1.25875 1.46962 1.48233 1.06819 1.22626 1.54153 1.21264 0.91238 0.96016 0.92269 1.22101 1.01569 1.01509 0.96936 1.19500 0.97507 0.78393 0.93048 1.21462 1.47415 0.93774 0.95098 0.91886 1.24914 0.94932 0.94960 0.98741 1.69911 1.47746 0.98410 1.36656 0.86593 0.78780 0.78104 0.84727 1.20133 1.21083 1.19703 1.22250 0.93757 1.05575 0.95531 1.21077 0.89433 0.74241 0.84166 1.90678 1.78838 1.50778 1.21186 0.92565 0.92558 0.92638 0.91580 0.91613 0.90564 0.90186 0.89317 0.90531 0.90348 0.91175 0.92719 0.92461 0.92595 0.94375 0.94449 0.92443 0.85496 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.14 -1.60 6.26 -26.73 -0.17 -1.77 16 3 C 0.13 1.56 5.93 -4.04 -0.02 1.53 16 4 N -0.62 -9.37 2.93 -172.42 -0.51 -9.87 16 5 C 0.11 1.66 6.83 -3.12 -0.02 1.63 16 6 C -0.11 -1.94 2.82 -90.14 -0.25 -2.19 16 7 H 0.12 2.01 6.20 -51.93 -0.32 1.69 16 8 C 0.53 9.96 6.81 -10.99 -0.07 9.88 16 9 O -0.57 -11.60 15.20 5.56 0.08 -11.51 16 10 N -0.59 -11.40 2.46 -175.06 -0.43 -11.83 16 11 C 0.12 1.98 6.10 -4.04 -0.02 1.96 16 12 C -0.16 -2.41 10.24 37.16 0.38 -2.03 16 13 C 0.24 5.14 4.93 -5.19 -0.03 5.11 16 14 C -0.54 -12.99 8.06 -34.44 -0.28 -13.27 16 15 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 16 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -23.51 13.29 55.43 0.74 -22.78 16 18 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 C -0.13 -2.37 6.00 -26.74 -0.16 -2.53 16 23 C 0.52 9.53 8.02 -10.86 -0.09 9.44 16 24 O -0.54 -11.45 17.60 5.55 0.10 -11.35 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.08 1.04 7.93 -51.93 -0.41 0.62 16 32 H 0.09 1.35 6.85 -51.93 -0.36 0.99 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 35 H 0.07 1.21 7.48 -51.92 -0.39 0.82 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.86 6.01 -51.93 -0.31 0.54 16 40 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 41 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 42 H 0.13 2.54 7.22 -51.93 -0.37 2.17 16 43 H 0.10 1.83 7.89 -51.93 -0.41 1.42 16 LS Contribution 352.96 15.07 5.32 5.32 Total: -1.00 -28.74 352.96 -7.37 -36.11 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -7.19 Total: 2.34 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -0.47 Total: 8.46 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: -0.20 Total: -44.48 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.18 Total: -22.86 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.74 -7.37 -36.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412171172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.298 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds