Wall clock time and date at job start Tue Mar 31 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47332 * 2 1 4 4 N 1.46499 * 109.47078 * 179.97438 * 3 2 1 5 5 C 1.46762 * 124.35092 * 269.95400 * 4 3 2 6 6 C 1.54488 * 105.47295 * 163.00592 * 5 4 3 7 7 H 1.09003 * 110.99821 * 267.27881 * 6 5 4 8 8 C 1.50701 * 110.96896 * 143.53525 * 6 5 4 9 9 O 1.21288 * 119.99868 * 342.32017 * 8 6 5 10 10 N 1.34776 * 119.99868 * 162.32335 * 8 6 5 11 11 C 1.46499 * 120.00105 * 354.86443 * 10 8 6 12 12 C 1.46505 * 119.99597 * 174.87008 * 10 8 6 13 13 H 1.08999 * 109.47081 * 359.97438 * 12 10 8 14 14 C 1.53008 * 109.46549 * 239.99656 * 12 10 8 15 15 C 1.50695 * 109.46878 * 120.00200 * 12 10 8 16 16 H 1.07991 * 120.00842 * 25.15107 * 15 12 10 17 17 C 1.37880 * 119.99624 * 205.43144 * 15 12 10 18 18 N 1.31515 * 120.00307 * 184.74699 * 17 15 12 19 19 Si 1.86801 * 120.00054 * 4.74516 * 17 15 12 20 20 H 1.48500 * 109.47483 * 94.86891 * 19 17 15 21 21 H 1.48503 * 109.47357 * 214.87175 * 19 17 15 22 22 H 1.48503 * 109.47126 * 334.86896 * 19 17 15 23 23 C 1.54625 * 101.76475 * 25.41576 * 6 5 4 24 24 C 1.34417 * 124.34964 * 89.97638 * 4 3 2 25 25 O 1.21288 * 124.94130 * 0.42333 * 24 4 3 26 26 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47015 * 299.99725 * 1 2 3 28 28 H 1.08997 * 109.47281 * 59.99938 * 1 2 3 29 29 H 1.09008 * 109.46929 * 239.99726 * 2 1 3 30 30 H 1.09002 * 109.46948 * 120.00412 * 2 1 3 31 31 H 1.09002 * 109.46836 * 60.00694 * 3 2 1 32 32 H 1.08997 * 109.46988 * 300.00241 * 3 2 1 33 33 H 1.08996 * 110.24958 * 44.00600 * 5 4 3 34 34 H 1.09002 * 110.24763 * 282.00544 * 5 4 3 35 35 H 1.08997 * 109.46921 * 275.32324 * 11 10 8 36 36 H 1.08997 * 109.46947 * 35.32370 * 11 10 8 37 37 H 1.08994 * 109.46675 * 155.32112 * 11 10 8 38 38 H 1.08996 * 109.47142 * 304.82993 * 14 12 10 39 39 H 1.09000 * 109.47174 * 64.83496 * 14 12 10 40 40 H 1.09006 * 109.46750 * 184.83437 * 14 12 10 41 41 H 0.97000 * 120.00076 * 179.97438 * 18 17 15 42 42 H 1.08999 * 110.48913 * 93.87953 * 23 6 5 43 43 H 1.08998 * 110.48329 * 216.52829 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3326 1.4435 1.2126 6 6 5.7409 1.0079 0.7505 7 1 5.8676 -0.0704 0.8475 8 6 6.8110 1.7447 1.5140 9 8 6.5358 2.7613 2.1155 10 7 8.0738 1.2740 1.5284 11 6 8.3837 -0.0113 0.8973 12 6 9.1366 2.0477 2.1752 13 1 8.7187 2.9674 2.5845 14 6 10.2154 2.3917 1.1461 15 6 9.7449 1.2331 3.2875 16 1 9.6975 0.1547 3.2555 17 6 10.3572 1.8649 4.3492 18 7 10.9695 1.1557 5.2721 19 14 10.3172 3.7281 4.4766 20 1 9.1822 4.1410 5.3406 21 1 11.5908 4.2114 5.0679 22 1 10.1467 4.3133 3.1224 23 6 5.7301 1.4324 -0.7363 24 6 4.2639 1.4418 -1.1088 25 8 3.8355 1.4485 -2.2435 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.9379 0.7338 1.9396 34 1 4.3697 2.4442 1.6432 35 1 8.1803 -0.8194 1.5999 36 1 7.7655 -0.1381 0.0086 37 1 9.4360 -0.0324 0.6139 38 1 10.5728 1.4764 0.6746 39 1 9.7959 3.0518 0.3869 40 1 11.0459 2.8922 1.6440 41 1 11.4006 1.6002 6.0188 42 1 6.1595 2.4275 -0.8521 43 1 6.2733 0.7084 -1.3436 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412171331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:40 Heat of formation + Delta-G solvation = -73.462687 kcal Electronic energy + Delta-G solvation = -22969.349871 eV Core-core repulsion = 19628.497080 eV Total energy + Delta-G solvation = -3340.852791 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.81524 -39.04461 -36.49055 -35.60590 -34.85749 -32.82520 -31.66660 -30.18049 -27.72252 -26.54089 -26.32502 -25.24848 -23.42992 -21.98728 -20.64536 -19.49953 -18.39838 -17.48239 -16.99982 -16.64694 -15.84368 -15.79230 -15.02181 -14.82753 -14.66050 -13.99870 -13.81377 -13.79096 -13.53331 -13.16299 -12.83876 -12.70863 -12.38655 -12.35786 -12.29483 -12.09831 -11.77257 -11.62962 -11.52868 -11.41484 -11.25354 -11.13729 -10.95576 -10.68770 -10.51437 -9.95791 -9.81087 -9.38218 -9.16130 -8.77624 -8.64189 -7.80898 -6.20371 -4.22042 2.49983 2.82298 3.06614 3.25469 3.34641 3.39863 3.62708 4.23759 4.34013 4.42504 4.71395 4.71715 4.77801 4.89190 5.01193 5.11793 5.19249 5.23389 5.37131 5.41976 5.43394 5.53455 5.63484 5.71654 5.74894 5.84183 5.89376 5.91871 5.99028 6.13012 6.29066 6.34599 6.42745 6.52122 6.86643 6.98563 7.01207 7.34009 7.57299 8.03896 8.08433 8.41074 8.73922 8.82230 9.41693 10.91802 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027740 B = 0.003970 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.141441 B = 7050.983252 C = 7317.906333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.126 3.874 4 N -0.618 5.618 5 C 0.114 3.886 6 C -0.124 4.124 7 H 0.110 0.890 8 C 0.517 3.483 9 O -0.549 6.549 10 N -0.583 5.583 11 C 0.082 3.918 12 C 0.225 3.775 13 H 0.064 0.936 14 C -0.150 4.150 15 C -0.527 4.527 16 H 0.078 0.922 17 C 0.079 3.921 18 N -0.892 5.892 19 Si 0.871 3.129 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.259 1.259 23 C -0.139 4.139 24 C 0.522 3.478 25 O -0.536 6.536 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.050 0.950 39 H 0.026 0.974 40 H 0.058 0.942 41 H 0.266 0.734 42 H 0.109 0.891 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.230 -2.527 -10.059 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.004 3.996 4 N -0.352 5.352 5 C -0.009 4.009 6 C -0.146 4.146 7 H 0.128 0.872 8 C 0.302 3.698 9 O -0.428 6.428 10 N -0.313 5.313 11 C -0.061 4.061 12 C 0.124 3.876 13 H 0.082 0.918 14 C -0.209 4.209 15 C -0.565 4.565 16 H 0.096 0.904 17 C -0.125 4.125 18 N -0.529 5.529 19 Si 0.698 3.302 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.183 1.183 23 C -0.180 4.180 24 C 0.310 3.690 25 O -0.414 6.414 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.127 0.873 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.526 -1.977 -10.146 17.828 hybrid contribution 0.198 0.690 0.378 0.811 sum -14.328 -1.286 -9.768 17.388 Atomic orbital electron populations 1.21690 0.95018 1.02015 1.01967 1.21921 0.96227 0.97147 1.02752 1.21439 0.77853 0.97088 1.03245 1.48335 1.06217 1.73164 1.07437 1.22073 0.88021 1.04062 0.86742 1.22259 0.94748 1.02339 0.95221 0.87150 1.19862 0.83323 0.85273 0.81307 1.90655 1.80953 1.26048 1.45114 1.48098 1.07991 1.20802 1.54386 1.21664 1.02327 0.85805 0.96316 1.19358 0.83739 0.93235 0.91267 0.91824 1.22311 1.00001 0.99842 0.98732 1.21107 1.36431 0.95058 1.03944 0.90409 1.24908 0.94297 0.98230 0.95046 1.69890 1.34851 1.35883 1.12289 0.86949 0.77708 0.86224 0.79339 1.19988 1.21195 1.18317 1.22269 0.95083 1.05435 0.95168 1.20810 0.89032 0.74845 0.84327 1.90708 1.78687 1.50904 1.21075 0.92404 0.92511 0.92520 0.91561 0.91578 0.90206 0.90044 0.89952 0.88615 0.92720 0.92745 0.90374 0.93144 0.95493 0.92323 0.92407 0.87292 0.87349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.68 16 2 C -0.14 -1.24 6.26 -26.73 -0.17 -1.41 16 3 C 0.13 1.23 5.93 -4.04 -0.02 1.21 16 4 N -0.62 -7.38 2.93 -172.41 -0.51 -7.88 16 5 C 0.11 1.38 6.83 -3.12 -0.02 1.35 16 6 C -0.12 -1.59 2.51 -90.14 -0.23 -1.81 16 7 H 0.11 1.20 7.08 -51.93 -0.37 0.83 16 8 C 0.52 9.27 6.83 -10.99 -0.07 9.20 16 9 O -0.55 -11.90 14.90 5.55 0.08 -11.82 16 10 N -0.58 -11.01 2.75 -175.26 -0.48 -11.49 16 11 C 0.08 1.21 8.91 59.85 0.53 1.74 16 12 C 0.22 5.12 2.15 -69.08 -0.15 4.97 16 13 H 0.06 1.60 4.48 -51.93 -0.23 1.37 16 14 C -0.15 -3.01 8.84 37.16 0.33 -2.68 16 15 C -0.53 -13.95 8.84 -34.44 -0.30 -14.25 16 16 H 0.08 2.19 7.63 -52.49 -0.40 1.79 16 17 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 18 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 19 Si 0.87 21.26 26.36 -169.99 -4.48 16.78 16 20 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.26 -6.05 5.97 56.52 0.34 -5.71 16 23 C -0.14 -1.69 6.09 -26.74 -0.16 -1.85 16 24 C 0.52 7.20 8.02 -10.86 -0.09 7.11 16 25 O -0.54 -9.05 17.59 5.55 0.10 -8.95 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.85 7.92 -51.93 -0.41 0.44 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 1.33 6.85 -51.93 -0.36 0.97 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.60 5.92 -51.93 -0.31 0.29 16 37 H 0.08 1.16 6.36 -51.93 -0.33 0.83 16 38 H 0.05 0.92 6.50 -51.93 -0.34 0.58 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 1.22 6.91 -51.93 -0.36 0.86 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.11 1.40 7.89 -51.93 -0.41 0.99 16 43 H 0.11 1.11 7.56 -51.93 -0.39 0.72 16 LS Contribution 341.96 15.07 5.15 5.15 Total: -1.00 -32.85 341.96 -6.35 -39.20 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.91 Total: -0.54 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -0.08 Total: 4.99 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.21 Total: -44.81 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.18 Total: -20.77 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.48 Total: 16.78 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.85 -6.35 -39.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412171331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.259 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds