Wall clock time and date at job start Tue Mar 31 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46816 * 2 1 4 4 N 1.46501 * 109.46768 * 179.97438 * 3 2 1 5 5 C 1.46766 * 124.35356 * 89.99681 * 4 3 2 6 6 C 1.54483 * 105.47648 * 197.03667 * 5 4 3 7 7 H 1.08996 * 110.96529 * 92.74007 * 6 5 4 8 8 C 1.50697 * 110.96667 * 216.46252 * 6 5 4 9 9 O 1.21274 * 120.00844 * 356.91724 * 8 6 5 10 10 N 1.34781 * 119.99418 * 176.90999 * 8 6 5 11 11 C 1.46500 * 120.00252 * 0.02562 * 10 8 6 12 12 C 1.46500 * 119.99819 * 180.02562 * 10 8 6 13 13 H 1.09002 * 109.47129 * 359.97438 * 12 10 8 14 14 C 1.52997 * 109.47473 * 120.00094 * 12 10 8 15 15 C 1.50708 * 109.47008 * 240.00262 * 12 10 8 16 16 H 1.08000 * 119.99723 * 359.97438 * 15 12 10 17 17 C 1.37873 * 119.99930 * 179.97438 * 15 12 10 18 18 N 1.31516 * 119.99779 * 179.97438 * 17 15 12 19 19 Si 1.86795 * 120.00284 * 0.02562 * 17 15 12 20 20 H 1.48498 * 109.47308 * 89.99617 * 19 17 15 21 21 H 1.48501 * 109.47369 * 209.99691 * 19 17 15 22 22 H 1.48502 * 109.47235 * 329.99860 * 19 17 15 23 23 C 1.54622 * 101.79706 * 334.60293 * 6 5 4 24 24 C 1.34418 * 124.35114 * 270.02331 * 4 3 2 25 25 O 1.21291 * 124.94004 * 359.60249 * 24 4 3 26 26 H 1.09003 * 109.47457 * 300.00314 * 1 2 3 27 27 H 1.09003 * 109.46858 * 60.00047 * 1 2 3 28 28 H 1.08996 * 109.47324 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47104 * 240.00191 * 2 1 3 30 30 H 1.09003 * 109.46858 * 119.99953 * 2 1 3 31 31 H 1.08995 * 109.47585 * 60.00472 * 3 2 1 32 32 H 1.09003 * 109.47369 * 299.99640 * 3 2 1 33 33 H 1.09002 * 110.24078 * 78.03701 * 5 4 3 34 34 H 1.09000 * 110.24821 * 316.04286 * 5 4 3 35 35 H 1.08994 * 109.47032 * 269.99966 * 11 10 8 36 36 H 1.08998 * 109.46624 * 29.99760 * 11 10 8 37 37 H 1.08998 * 109.46783 * 149.99505 * 11 10 8 38 38 H 1.09002 * 109.47153 * 59.99757 * 14 12 10 39 39 H 1.09001 * 109.46832 * 299.99948 * 14 12 10 40 40 H 1.09004 * 109.47261 * 179.97438 * 14 12 10 41 41 H 0.96999 * 119.99874 * 180.02562 * 18 17 15 42 42 H 1.09008 * 110.48495 * 143.45316 * 23 6 5 43 43 H 1.08996 * 110.48911 * 266.10192 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.3336 1.4422 -1.2107 6 6 5.7412 1.0061 -0.7471 7 1 5.8670 -0.0722 -0.8437 8 6 6.8124 1.7418 -1.5103 9 8 6.5060 2.5102 -2.3971 10 7 8.1109 1.5457 -1.2072 11 6 8.4811 0.6171 -0.1363 12 6 9.1523 2.2613 -1.9487 13 1 8.6890 2.9008 -2.7001 14 6 9.9690 3.1199 -0.9810 15 6 10.0596 1.2669 -2.6265 16 1 9.8788 0.2080 -2.5156 17 6 11.1203 1.7092 -3.3882 18 7 11.9124 0.8414 -3.9792 19 14 11.4334 3.5408 -3.5794 20 1 12.3389 4.0039 -2.4974 21 1 12.0650 3.8000 -4.8982 22 1 10.1452 4.2747 -3.4948 23 6 5.7301 1.4309 0.7396 24 6 4.2629 1.4422 1.1107 25 8 3.8336 1.4488 2.2450 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 4.3716 2.4426 -1.6418 34 1 3.9391 0.7323 -1.9376 35 1 8.5300 1.1552 0.8104 36 1 7.7341 -0.1735 -0.0667 37 1 9.4547 0.1789 -0.3559 38 1 10.4323 2.4801 -0.2299 39 1 9.3128 3.8390 -0.4908 40 1 10.7441 3.6519 -1.5327 41 1 12.6589 1.1526 -4.5147 42 1 6.2724 0.7065 1.3474 43 1 6.1604 2.4257 0.8554 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412171334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:47 Heat of formation + Delta-G solvation = -67.159755 kcal Electronic energy + Delta-G solvation = -22992.172239 eV Core-core repulsion = 19651.592763 eV Total energy + Delta-G solvation = -3340.579475 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.84622 -39.07299 -36.50413 -35.64411 -34.92422 -32.92564 -31.68170 -30.19095 -27.74445 -26.51176 -26.33752 -25.19248 -23.48112 -21.99230 -20.87889 -19.49214 -18.45491 -17.35062 -16.98143 -16.61918 -15.90081 -15.81285 -15.12064 -14.90393 -14.66906 -14.18499 -13.81713 -13.81397 -13.55241 -13.02653 -12.86287 -12.84439 -12.48289 -12.35916 -12.27580 -12.15721 -11.79745 -11.72208 -11.60468 -11.37573 -11.35070 -11.16671 -10.96864 -10.78288 -10.20922 -9.96796 -9.69384 -9.42583 -9.16519 -8.80290 -8.69184 -7.85885 -6.20558 -4.21913 2.49469 2.83248 3.04685 3.19727 3.33378 3.35001 3.59394 4.20949 4.29975 4.34968 4.70406 4.70449 4.77670 4.87532 5.00002 5.10580 5.16455 5.21511 5.35899 5.40546 5.47742 5.54326 5.58419 5.71810 5.74173 5.83126 5.86609 5.90944 5.97986 6.18254 6.20778 6.29986 6.41211 6.42635 6.76101 6.98046 7.03727 7.24645 7.54870 8.05186 8.07750 8.38253 8.70404 8.80768 9.40066 10.91993 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033501 B = 0.003780 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.584390 B = 7406.035258 C = 7599.127018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.126 3.874 4 N -0.619 5.619 5 C 0.117 3.883 6 C -0.122 4.122 7 H 0.115 0.885 8 C 0.518 3.482 9 O -0.548 6.548 10 N -0.581 5.581 11 C 0.078 3.922 12 C 0.229 3.771 13 H 0.063 0.937 14 C -0.161 4.161 15 C -0.530 4.530 16 H 0.080 0.920 17 C 0.076 3.924 18 N -0.894 5.894 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.263 1.263 23 C -0.143 4.143 24 C 0.521 3.479 25 O -0.536 6.536 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.033 0.967 40 H 0.050 0.950 41 H 0.266 0.734 42 H 0.111 0.889 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.257 -0.947 8.271 18.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.004 3.996 4 N -0.353 5.353 5 C -0.006 4.006 6 C -0.144 4.144 7 H 0.133 0.867 8 C 0.304 3.696 9 O -0.427 6.427 10 N -0.310 5.310 11 C -0.066 4.066 12 C 0.127 3.873 13 H 0.081 0.919 14 C -0.219 4.219 15 C -0.568 4.568 16 H 0.098 0.902 17 C -0.127 4.127 18 N -0.531 5.531 19 Si 0.713 3.287 20 H -0.204 1.204 21 H -0.221 1.221 22 H -0.188 1.188 23 C -0.184 4.184 24 C 0.308 3.692 25 O -0.413 6.413 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.129 0.871 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.526 -0.558 8.274 18.490 hybrid contribution 0.506 0.726 -0.220 0.911 sum -16.020 0.168 8.054 17.932 Atomic orbital electron populations 1.21691 0.95021 1.02021 1.01958 1.21919 0.96225 0.97148 1.02761 1.21437 0.77869 0.97093 1.03221 1.48367 1.06232 1.73234 1.07469 1.22015 0.88020 1.03935 0.86618 1.22222 0.94642 1.02463 0.95057 0.86726 1.19855 0.83409 0.82648 0.83728 1.90659 1.81757 1.38080 1.32185 1.47832 1.05457 1.42618 1.35137 1.21781 1.02815 0.92495 0.89502 1.19321 0.85484 0.92237 0.90212 0.91897 1.22451 0.99735 0.99306 1.00404 1.21140 1.10934 0.94320 1.30437 0.90246 1.24860 0.95449 0.97650 0.94710 1.69869 1.16838 1.34068 1.32335 0.86914 0.79038 0.86090 0.76638 1.20371 1.22124 1.18797 1.22407 0.94978 1.05484 0.95492 1.20870 0.89108 0.74856 0.84324 1.90710 1.78668 1.50807 1.21121 0.92520 0.92518 0.92403 0.91579 0.91554 0.90060 0.90212 0.88893 0.89863 0.93368 0.92330 0.89416 0.92490 0.94819 0.93133 0.92360 0.87115 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.14 -1.21 6.26 -26.73 -0.17 -1.38 16 3 C 0.13 1.20 5.93 -4.04 -0.02 1.18 16 4 N -0.62 -7.19 2.93 -172.38 -0.51 -7.69 16 5 C 0.12 1.37 6.69 -3.12 -0.02 1.35 16 6 C -0.12 -1.53 2.55 -90.14 -0.23 -1.76 16 7 H 0.11 1.24 7.41 -51.93 -0.38 0.86 16 8 C 0.52 9.13 6.98 -10.98 -0.08 9.06 16 9 O -0.55 -11.64 14.86 5.56 0.08 -11.56 16 10 N -0.58 -10.86 2.75 -175.26 -0.48 -11.34 16 11 C 0.08 1.14 8.06 59.85 0.48 1.62 16 12 C 0.23 5.23 2.23 -69.08 -0.15 5.07 16 13 H 0.06 1.60 5.96 -51.93 -0.31 1.30 16 14 C -0.16 -3.31 8.67 37.16 0.32 -2.99 16 15 C -0.53 -14.03 8.57 -34.44 -0.30 -14.33 16 16 H 0.08 2.25 7.58 -52.49 -0.40 1.85 16 17 C 0.08 2.11 5.45 -17.82 -0.10 2.02 16 18 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 19 Si 0.88 21.25 24.37 -169.99 -4.14 17.11 16 20 H -0.28 -6.39 6.87 56.52 0.39 -6.00 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 23 C -0.14 -1.69 5.26 -26.71 -0.14 -1.83 16 24 C 0.52 7.02 8.02 -10.83 -0.09 6.93 16 25 O -0.54 -8.91 17.59 5.55 0.10 -8.81 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.83 7.92 -51.93 -0.41 0.42 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.23 7.01 -51.93 -0.36 0.87 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.60 8.00 -51.93 -0.42 0.18 16 36 H 0.06 0.68 6.04 -51.93 -0.31 0.37 16 37 H 0.09 1.45 7.02 -51.93 -0.36 1.09 16 38 H 0.06 1.09 7.67 -51.93 -0.40 0.69 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.11 1.11 7.30 -51.92 -0.38 0.73 16 43 H 0.11 1.33 7.89 -51.93 -0.41 0.92 16 LS Contribution 338.06 15.07 5.09 5.09 Total: -1.00 -32.64 338.06 -6.08 -38.72 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.88 Total: -0.34 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -0.12 Total: 4.28 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: -0.21 Total: -44.49 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.18 Total: -20.37 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.14 Total: 17.11 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.64 -6.08 -38.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412171334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.441 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds