Wall clock time and date at job start Tue Mar 31 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 N 1.46500 * 109.46998 * 179.97438 * 3 2 1 5 5 C 1.46767 * 124.34983 * 269.73052 * 4 3 2 6 6 C 1.54656 * 105.38451 * 162.85213 * 5 4 3 7 7 H 1.08995 * 111.22576 * 267.57636 * 6 5 4 8 8 C 1.50694 * 110.82250 * 143.77329 * 6 5 4 9 9 O 1.21277 * 120.00362 * 6.35035 * 8 6 5 10 10 N 1.34781 * 120.00161 * 186.34970 * 8 6 5 11 11 C 1.46503 * 120.00028 * 0.02562 * 10 8 6 12 12 C 1.46500 * 120.00025 * 179.97438 * 10 8 6 13 13 H 1.08992 * 109.47344 * 0.02562 * 12 10 8 14 14 C 1.52998 * 109.47177 * 120.00052 * 12 10 8 15 15 C 1.50703 * 109.47100 * 240.00053 * 12 10 8 16 16 H 1.08004 * 119.99858 * 359.97438 * 15 12 10 17 17 C 1.37877 * 120.00035 * 180.02562 * 15 12 10 18 18 N 1.31514 * 119.99777 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 120.00161 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47114 * 90.00077 * 19 17 15 21 21 H 1.48500 * 109.47266 * 210.00325 * 19 17 15 22 22 H 1.48503 * 109.47225 * 330.00246 * 19 17 15 23 23 C 1.54628 * 101.68443 * 25.76441 * 6 5 4 24 24 C 1.34420 * 124.34958 * 90.02301 * 4 3 2 25 25 O 1.21273 * 124.94276 * 0.38821 * 24 4 3 26 26 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 28 28 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 29 29 H 1.09000 * 109.47486 * 240.00171 * 2 1 3 30 30 H 1.09001 * 109.47362 * 119.99448 * 2 1 3 31 31 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 32 32 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 33 33 H 1.09007 * 110.24020 * 281.98126 * 5 4 3 34 34 H 1.09000 * 110.24829 * 43.97530 * 5 4 3 35 35 H 1.08996 * 109.47295 * 89.99506 * 11 10 8 36 36 H 1.08999 * 109.47119 * 210.00240 * 11 10 8 37 37 H 1.09009 * 109.46714 * 329.99980 * 11 10 8 38 38 H 1.08996 * 109.47665 * 179.97438 * 14 12 10 39 39 H 1.09001 * 109.46958 * 300.00100 * 14 12 10 40 40 H 1.09009 * 109.47136 * 59.99586 * 14 12 10 41 41 H 0.97000 * 119.99856 * 179.97438 * 18 17 15 42 42 H 1.09003 * 110.48791 * 216.31015 * 23 6 5 43 43 H 1.08994 * 110.48886 * 93.66673 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.3325 1.4486 1.2127 6 6 5.7406 1.0068 0.7502 7 1 5.8671 -0.0715 0.8460 8 6 6.8108 1.7426 1.5144 9 8 6.5068 2.4678 2.4378 10 7 8.1060 1.5948 1.1719 11 6 8.4733 0.7193 0.0562 12 6 9.1464 2.3106 1.9146 13 1 8.6856 2.9077 2.7013 14 6 10.1120 1.3020 2.5399 15 6 9.9027 3.2142 0.9751 16 1 9.6353 3.2513 -0.0707 17 6 10.9365 3.9928 1.4504 18 7 11.2629 3.9465 2.7236 19 14 11.8744 5.1124 0.2858 20 1 11.2197 6.4447 0.2454 21 1 13.2729 5.2623 0.7622 22 1 11.8762 4.5202 -1.0760 23 6 5.7300 1.4329 -0.7362 24 6 4.2638 1.4430 -1.1088 25 8 3.8355 1.4500 -2.2434 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6765 1.9563 -0.8899 32 1 1.6765 1.9564 0.8900 33 1 4.3697 2.4512 1.6390 34 1 3.9375 0.7421 1.9426 35 1 8.4832 1.2948 -0.8693 36 1 9.4636 0.3001 0.2341 37 1 7.7462 -0.0887 -0.0262 38 1 10.8864 1.8344 3.0921 39 1 9.5650 0.6484 3.2194 40 1 10.5729 0.7044 1.7533 41 1 11.9905 4.4940 3.0579 42 1 6.2731 0.7094 -1.3443 43 1 6.1597 2.4280 -0.8509 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412171335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:49 Heat of formation + Delta-G solvation = -94.561997 kcal Electronic energy + Delta-G solvation = -22980.021350 eV Core-core repulsion = 19638.253625 eV Total energy + Delta-G solvation = -3341.767726 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.92390 -40.33488 -37.61491 -37.04968 -35.81477 -34.74056 -32.67126 -30.98844 -28.76343 -27.59087 -27.30769 -27.20817 -24.60387 -22.70255 -22.30136 -20.50961 -19.86974 -18.63808 -18.10014 -17.81372 -17.35145 -16.89988 -16.39730 -16.04172 -15.75689 -15.50517 -14.86761 -14.75827 -14.64905 -14.37913 -14.25022 -13.81355 -13.74499 -13.39266 -13.07545 -12.97229 -12.90836 -12.78777 -12.67847 -12.64666 -12.41466 -12.34966 -12.17568 -12.12411 -12.07883 -11.64070 -11.16156 -11.05898 -10.61432 -10.44391 -9.76217 -9.31009 -8.13393 -6.29123 1.41883 1.43486 1.45971 1.52590 1.74541 1.90912 2.31457 2.48429 3.14969 3.18362 3.37141 3.74252 3.86243 4.00932 4.04910 4.13260 4.35102 4.48600 4.50767 4.55352 4.61286 4.67727 4.71684 4.80016 4.84730 4.89180 4.93314 4.97415 5.09186 5.12625 5.16180 5.20347 5.34416 5.49642 5.56257 5.65424 5.69675 6.01730 6.05744 6.19037 6.79218 6.83948 7.06035 7.32065 7.48075 8.90596 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029070 B = 0.003849 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.953437 B = 7273.009402 C = 7605.316864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.118 3.882 4 N -0.613 5.613 5 C 0.122 3.878 6 C -0.105 4.105 7 H 0.151 0.849 8 C 0.509 3.491 9 O -0.595 6.595 10 N -0.594 5.594 11 C 0.077 3.923 12 C 0.262 3.738 13 H 0.012 0.988 14 C -0.134 4.134 15 C -0.537 4.537 16 H 0.061 0.939 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.959 3.041 20 H -0.284 1.284 21 H -0.282 1.282 22 H -0.262 1.262 23 C -0.139 4.139 24 C 0.517 3.483 25 O -0.572 6.572 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.024 0.976 40 H 0.048 0.952 41 H 0.264 0.736 42 H 0.135 0.865 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.870 -10.885 -4.730 19.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.003 4.003 4 N -0.346 5.346 5 C -0.001 4.001 6 C -0.127 4.127 7 H 0.168 0.832 8 C 0.297 3.703 9 O -0.477 6.477 10 N -0.324 5.324 11 C -0.065 4.065 12 C 0.160 3.840 13 H 0.030 0.970 14 C -0.193 4.193 15 C -0.575 4.575 16 H 0.079 0.921 17 C -0.183 4.183 18 N -0.556 5.556 19 Si 0.785 3.215 20 H -0.210 1.210 21 H -0.207 1.207 22 H -0.186 1.186 23 C -0.179 4.179 24 C 0.306 3.694 25 O -0.453 6.453 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.128 0.872 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.153 0.847 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.172 -10.439 -4.707 19.009 hybrid contribution 0.887 1.059 -0.230 1.401 sum -14.285 -9.380 -4.937 17.788 Atomic orbital electron populations 1.21678 0.93705 1.02637 1.02401 1.21841 0.97290 0.95832 1.02260 1.21653 0.76674 0.98278 1.03649 1.48466 1.07086 1.72085 1.06921 1.22012 0.87839 1.03450 0.86798 1.22200 0.92998 1.03297 0.94179 0.83153 1.20684 0.83938 0.81824 0.83900 1.90646 1.82332 1.41766 1.32962 1.48170 1.05975 1.45108 1.33133 1.21962 1.02573 0.93564 0.88411 1.18528 0.84462 0.89916 0.91097 0.97008 1.21888 1.00280 0.97763 0.99344 1.21602 1.16159 1.24161 0.95606 0.92112 1.25673 0.97941 0.98131 0.96576 1.70012 1.30149 1.40820 1.14595 0.85540 0.77677 0.78838 0.79474 1.21019 1.20699 1.18645 1.22423 0.94239 1.05654 0.95599 1.21064 0.89814 0.74402 0.84150 1.90683 1.79345 1.52737 1.22494 0.91659 0.91409 0.92823 0.93277 0.90687 0.91202 0.88311 0.91149 0.87168 0.92471 0.91095 0.88304 0.91588 0.95733 0.93319 0.92714 0.84713 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.13 -2.07 6.26 30.60 0.19 -1.88 16 3 C 0.12 2.20 5.93 86.38 0.51 2.71 16 4 N -0.61 -14.02 2.93 -817.61 -2.40 -16.42 16 5 C 0.12 2.75 6.65 86.89 0.58 3.32 16 6 C -0.11 -2.50 2.59 -10.42 -0.03 -2.53 16 7 H 0.15 2.49 7.56 -2.39 -0.02 2.47 16 8 C 0.51 18.45 6.99 87.65 0.61 19.07 16 9 O -0.60 -27.23 14.89 -3.02 -0.04 -27.27 16 10 N -0.59 -22.79 2.75 -826.80 -2.28 -25.07 16 11 C 0.08 2.14 8.22 127.77 1.05 3.19 16 12 C 0.26 12.96 2.64 44.25 0.12 13.08 16 13 H 0.01 0.71 6.90 -2.39 -0.02 0.69 16 14 C -0.13 -6.16 8.95 71.98 0.64 -5.51 16 15 C -0.54 -28.27 8.37 25.60 0.21 -28.06 16 16 H 0.06 3.11 7.64 -2.91 -0.02 3.09 16 17 C 0.02 0.88 5.30 84.65 0.45 1.33 16 18 N -0.92 -51.92 11.32 21.45 0.24 -51.67 16 19 Si 0.96 42.56 29.54 68.60 2.03 44.59 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 23 C -0.14 -3.33 5.04 30.59 0.15 -3.18 16 24 C 0.52 14.19 8.02 87.90 0.71 14.90 16 25 O -0.57 -19.71 17.59 -3.01 -0.05 -19.76 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.47 7.92 -2.39 -0.02 1.45 16 32 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.96 7.07 -2.38 -0.02 1.95 16 34 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.06 1.55 7.90 -2.39 -0.02 1.53 16 36 H 0.07 2.04 6.43 -2.39 -0.02 2.02 16 37 H 0.10 1.83 5.96 -2.38 -0.01 1.82 16 38 H 0.07 3.42 6.07 -2.39 -0.01 3.41 16 39 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.05 2.01 6.67 -2.38 -0.02 1.99 16 41 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 42 H 0.13 2.54 7.10 -2.39 -0.02 2.52 16 43 H 0.09 2.67 7.89 -2.39 -0.02 2.65 16 Total: -1.00 -71.22 343.77 4.40 -66.82 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.99 Total: 13.37 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 5.92 Total: 15.41 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -4.43 Total: -93.16 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -0.10 Total: -47.03 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -71.22 4.40 -66.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412171335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.740 kcal (2) G-P(sol) polarization free energy of solvation -71.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds