Wall clock time and date at job start Tue Mar 31 2020 06:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46770 * 2 1 4 4 N 1.46505 * 109.46766 * 180.02562 * 3 2 1 5 5 C 1.46764 * 124.34819 * 270.04896 * 4 3 2 6 6 C 1.54480 * 105.47106 * 162.96126 * 5 4 3 7 7 H 1.09002 * 110.97088 * 267.29706 * 6 5 4 8 8 C 1.50705 * 110.99864 * 143.54649 * 6 5 4 9 9 O 1.21279 * 119.99789 * 3.11206 * 8 6 5 10 10 N 1.34771 * 119.99889 * 183.11036 * 8 6 5 11 11 C 1.46502 * 120.00083 * 180.02562 * 10 8 6 12 12 H 1.08999 * 109.47412 * 34.99478 * 11 10 8 13 13 C 1.50704 * 109.47296 * 155.00257 * 11 10 8 14 14 H 1.07993 * 120.00092 * 359.97438 * 13 11 10 15 15 C 1.37876 * 119.99574 * 180.02562 * 13 11 10 16 16 N 1.31513 * 120.00301 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99774 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47011 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47293 * 119.99473 * 17 15 13 20 20 H 1.48497 * 109.47055 * 239.99887 * 17 15 13 21 21 C 1.53003 * 109.46760 * 274.99878 * 11 10 8 22 22 C 1.53006 * 109.47013 * 65.00167 * 21 11 10 23 23 C 1.54632 * 101.76683 * 25.41714 * 6 5 4 24 24 C 1.34422 * 124.34955 * 90.02161 * 4 3 2 25 25 O 1.21280 * 124.94346 * 0.46870 * 24 4 3 26 26 H 1.09002 * 109.47192 * 299.99753 * 1 2 3 27 27 H 1.08997 * 109.47348 * 59.99839 * 1 2 3 28 28 H 1.09001 * 109.47466 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46684 * 240.00197 * 2 1 3 30 30 H 1.08997 * 109.47348 * 120.00161 * 2 1 3 31 31 H 1.08991 * 109.47476 * 60.00368 * 3 2 1 32 32 H 1.09005 * 109.47135 * 299.99867 * 3 2 1 33 33 H 1.08996 * 110.24520 * 43.96308 * 5 4 3 34 34 H 1.08992 * 110.24373 * 281.96018 * 5 4 3 35 35 H 0.97007 * 120.00461 * 0.02562 * 10 8 6 36 36 H 0.97002 * 119.99556 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.47330 * 184.99470 * 21 11 10 38 38 H 1.09003 * 109.47467 * 305.00053 * 21 11 10 39 39 H 1.09005 * 109.47171 * 180.02562 * 22 21 11 40 40 H 1.08995 * 109.46912 * 299.99506 * 22 21 11 41 41 H 1.08993 * 109.47167 * 59.99614 * 22 21 11 42 42 H 1.08999 * 110.48384 * 93.87777 * 23 6 5 43 43 H 1.08996 * 110.48487 * 216.52569 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3336 1.4414 1.2108 6 6 5.7411 1.0056 0.7468 7 1 5.8667 -0.0730 0.8419 8 6 6.8129 1.7400 1.5104 9 8 6.5070 2.5074 2.3983 10 7 8.1112 1.5440 1.2065 11 6 9.1531 2.2576 1.9491 12 1 8.8454 2.3712 2.9885 13 6 10.4391 1.4742 1.8885 14 1 10.4765 0.5382 1.3511 15 6 11.5677 1.9519 2.5203 16 7 11.5221 3.0915 3.1752 17 14 13.1616 0.9806 2.4459 18 1 12.9501 -0.2576 1.6537 19 1 14.2149 1.8063 1.8027 20 1 13.5865 0.6205 3.8224 21 6 9.3677 3.6388 1.3269 22 6 8.1003 4.4785 1.4998 23 6 5.7295 1.4324 -0.7394 24 6 4.2630 1.4432 -1.1107 25 8 3.8337 1.4519 -2.2450 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.9389 0.7307 1.9369 34 1 4.3716 2.4413 1.6427 35 1 8.3558 0.9305 0.4960 36 1 12.3160 3.4273 3.6199 37 1 10.2023 4.1348 1.8222 38 1 9.5886 3.5288 0.2652 39 1 8.2530 5.4624 1.0561 40 1 7.2656 3.9826 1.0044 41 1 7.8794 4.5885 2.5614 42 1 6.1594 2.4274 -0.8539 43 1 6.2718 0.7090 -1.3483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412244305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:53 Heat of formation + Delta-G solvation = -89.526476 kcal Electronic energy + Delta-G solvation = -22819.601934 eV Core-core repulsion = 19478.052565 eV Total energy + Delta-G solvation = -3341.549369 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.72995 -38.90085 -36.44358 -35.27750 -34.71264 -32.53677 -31.66992 -30.69220 -27.69207 -27.21084 -26.27195 -23.57983 -22.60851 -21.97307 -20.13213 -19.42291 -19.35555 -17.51278 -16.99385 -16.34463 -15.68992 -15.47330 -14.98953 -14.82346 -14.58237 -14.25994 -13.78372 -13.77381 -13.36279 -13.20153 -12.83209 -12.71583 -12.34251 -12.12735 -11.91772 -11.63775 -11.60007 -11.44410 -11.30156 -11.21036 -11.00134 -10.94627 -10.88347 -10.35415 -10.23010 -9.92175 -9.67717 -9.12373 -9.07338 -8.76088 -8.54955 -7.91645 -6.17050 -4.26609 2.54049 2.87970 3.19978 3.21428 3.29273 3.31355 3.87282 4.27900 4.32941 4.46056 4.72308 4.73808 4.92069 4.97522 5.02596 5.14971 5.20638 5.38068 5.43251 5.48702 5.52587 5.63741 5.74497 5.76384 5.85069 5.94932 5.99988 6.34363 6.39888 6.45518 6.60228 6.98082 7.02421 7.13522 7.29732 7.36701 7.56436 7.66949 7.84238 8.11546 8.12944 8.57101 8.71366 9.01947 9.40939 10.88229 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031879 B = 0.003516 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.119750 B = 7961.217635 C = 8078.818442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.125 3.875 4 N -0.620 5.620 5 C 0.118 3.882 6 C -0.126 4.126 7 H 0.111 0.889 8 C 0.512 3.488 9 O -0.544 6.544 10 N -0.702 5.702 11 C 0.270 3.730 12 H 0.050 0.950 13 C -0.535 4.535 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.882 5.882 17 Si 0.901 3.099 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.128 4.128 22 C -0.137 4.137 23 C -0.144 4.144 24 C 0.521 3.479 25 O -0.537 6.537 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.390 0.610 36 H 0.264 0.736 37 H 0.099 0.901 38 H 0.032 0.968 39 H 0.023 0.977 40 H 0.037 0.963 41 H 0.050 0.950 42 H 0.110 0.890 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.279 -4.903 -4.741 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.004 3.996 4 N -0.353 5.353 5 C -0.005 4.005 6 C -0.148 4.148 7 H 0.129 0.871 8 C 0.296 3.704 9 O -0.423 6.423 10 N -0.349 5.349 11 C 0.168 3.832 12 H 0.068 0.932 13 C -0.573 4.573 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.519 5.519 17 Si 0.728 3.272 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.167 4.167 22 C -0.194 4.194 23 C -0.185 4.185 24 C 0.309 3.691 25 O -0.414 6.414 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.222 0.778 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.050 0.950 39 H 0.042 0.958 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.128 0.872 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.647 -4.199 -4.565 16.831 hybrid contribution 1.082 -0.830 -0.264 1.389 sum -14.565 -5.029 -4.829 16.148 Atomic orbital electron populations 1.21691 0.95039 1.01988 1.01974 1.21918 0.96206 0.97196 1.02708 1.21430 0.77956 0.97028 1.03218 1.48365 1.06187 1.73281 1.07514 1.21999 0.88067 1.03908 0.86536 1.22300 0.95036 1.02358 0.95110 0.87057 1.19794 0.83886 0.82628 0.84105 1.90685 1.82150 1.37324 1.32125 1.46487 1.05650 1.45155 1.37639 1.18822 0.83915 0.88478 0.91948 0.93201 1.21259 0.94463 1.06950 1.34628 0.92001 1.24883 0.98988 0.95036 0.94758 1.69900 1.29520 1.19219 1.33256 0.86408 0.82982 0.79927 0.77874 1.19727 1.20871 1.20902 1.21944 0.97960 0.97695 0.99102 1.21840 0.98763 0.97733 1.01086 1.22335 0.94978 1.05595 0.95568 1.20856 0.89137 0.74809 0.84310 1.90705 1.78696 1.50812 1.21160 0.92511 0.92513 0.92434 0.91581 0.91628 0.90230 0.90076 0.90064 0.88835 0.77800 0.92584 0.88257 0.94957 0.95821 0.94426 0.93117 0.87163 0.87304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.14 -1.23 6.26 -26.73 -0.17 -1.40 16 3 C 0.13 1.23 5.94 -4.04 -0.02 1.21 16 4 N -0.62 -7.36 2.93 -172.41 -0.51 -7.86 16 5 C 0.12 1.38 6.69 -3.12 -0.02 1.36 16 6 C -0.13 -1.56 3.54 -90.13 -0.32 -1.88 16 7 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 8 C 0.51 8.79 5.63 -10.99 -0.06 8.73 16 9 O -0.54 -11.18 12.67 5.56 0.07 -11.11 16 10 N -0.70 -13.08 5.01 -54.93 -0.28 -13.35 16 11 C 0.27 6.37 2.24 -69.08 -0.15 6.21 16 12 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 13 C -0.53 -13.47 8.73 -34.44 -0.30 -13.77 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 16 N -0.88 -23.97 11.29 55.43 0.63 -23.34 16 17 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.13 -2.97 5.45 -26.73 -0.15 -3.11 16 22 C -0.14 -2.90 8.51 37.16 0.32 -2.58 16 23 C -0.14 -1.76 6.40 -26.74 -0.17 -1.93 16 24 C 0.52 7.26 8.02 -10.86 -0.09 7.17 16 25 O -0.54 -9.21 17.59 5.56 0.10 -9.11 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.25 7.01 -51.93 -0.36 0.89 16 35 H 0.39 6.28 8.54 -40.82 -0.35 5.93 16 36 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.10 2.58 5.95 -51.93 -0.31 2.27 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.04 0.75 5.64 -51.93 -0.29 0.46 16 41 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 42 H 0.11 1.44 7.89 -51.93 -0.41 1.03 16 43 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 346.96 15.07 5.23 5.23 Total: -1.00 -30.21 346.96 -7.77 -37.98 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -7.13 Total: 5.57 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -0.86 Total: 0.97 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.15 Total: -44.55 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: 0.17 Total: -20.22 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.21 -7.77 -37.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412244305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.543 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds