Wall clock time and date at job start Tue Mar 31 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46989 * 2 1 4 4 N 1.46497 * 109.46828 * 179.97438 * 3 2 1 5 5 C 1.46769 * 124.34762 * 89.99882 * 4 3 2 6 6 C 1.54476 * 105.47481 * 197.03506 * 5 4 3 7 7 H 1.09003 * 110.97113 * 92.73786 * 6 5 4 8 8 C 1.50696 * 110.97386 * 216.46846 * 6 5 4 9 9 O 1.21283 * 119.99548 * 356.90398 * 8 6 5 10 10 N 1.34779 * 120.00398 * 176.91406 * 8 6 5 11 11 C 1.46497 * 119.99921 * 180.02562 * 10 8 6 12 12 H 1.08998 * 109.47499 * 34.98985 * 11 10 8 13 13 C 1.50694 * 109.47167 * 154.99746 * 11 10 8 14 14 H 1.08005 * 120.00416 * 5.60032 * 13 11 10 15 15 C 1.37879 * 120.00068 * 185.59928 * 13 11 10 16 16 N 1.31513 * 120.00004 * 196.28508 * 15 13 11 17 17 Si 1.86799 * 120.00206 * 16.28675 * 15 13 11 18 18 H 1.48494 * 109.47293 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.46881 * 59.99614 * 17 15 13 20 20 H 1.48498 * 109.46884 * 300.00115 * 17 15 13 21 21 C 1.53002 * 109.46666 * 274.99203 * 11 10 8 22 22 C 1.52996 * 109.47202 * 65.55928 * 21 11 10 23 23 C 1.54627 * 101.79852 * 334.60360 * 6 5 4 24 24 C 1.34415 * 124.35087 * 270.02159 * 4 3 2 25 25 O 1.21276 * 124.94340 * 359.60143 * 24 4 3 26 26 H 1.09001 * 109.47500 * 300.00276 * 1 2 3 27 27 H 1.09007 * 109.47225 * 60.00478 * 1 2 3 28 28 H 1.09002 * 109.47528 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47500 * 239.99724 * 2 1 3 30 30 H 1.08994 * 109.46941 * 119.99444 * 2 1 3 31 31 H 1.08995 * 109.47010 * 59.99922 * 3 2 1 32 32 H 1.08994 * 109.46825 * 299.99515 * 3 2 1 33 33 H 1.09002 * 110.24735 * 78.03543 * 5 4 3 34 34 H 1.08998 * 110.32247 * 316.07654 * 5 4 3 35 35 H 0.96993 * 119.99855 * 359.97438 * 10 8 6 36 36 H 0.97003 * 120.00251 * 354.83342 * 16 15 13 37 37 H 1.09002 * 109.47183 * 185.55543 * 21 11 10 38 38 H 1.08997 * 109.47582 * 305.55583 * 21 11 10 39 39 H 1.09002 * 109.47643 * 180.02562 * 22 21 11 40 40 H 1.09001 * 109.47221 * 299.99671 * 22 21 11 41 41 H 1.08999 * 109.47586 * 59.99654 * 22 21 11 42 42 H 1.09007 * 110.48941 * 143.45403 * 23 6 5 43 43 H 1.08997 * 110.48954 * 266.10021 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.3335 1.4423 -1.2108 6 6 5.7411 1.0062 -0.7473 7 1 5.8669 -0.0722 -0.8439 8 6 6.8123 1.7419 -1.5104 9 8 6.5057 2.5103 -2.3973 10 7 8.1109 1.5458 -1.2075 11 6 9.1521 2.2614 -1.9490 12 1 8.7946 3.2583 -2.2068 13 6 10.3882 2.3763 -1.0948 14 1 10.4300 1.8811 -0.1359 15 6 11.4660 3.1137 -1.5374 16 7 12.6429 2.9635 -0.9701 17 14 11.2544 4.3260 -2.9427 18 1 12.5537 4.9867 -3.2263 19 1 10.2490 5.3514 -2.5646 20 1 10.7924 3.6030 -4.1547 21 6 9.4863 1.4927 -3.2290 22 6 8.2705 1.4953 -4.1577 23 6 5.7301 1.4310 0.7394 24 6 4.2629 1.4423 1.1107 25 8 3.8336 1.4489 2.2449 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5137 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 4.3715 2.4427 -1.6420 34 1 3.9396 0.7331 -1.9388 35 1 8.3560 0.9315 -0.4981 36 1 12.7372 2.3909 -0.1928 37 1 10.3277 1.9707 -3.7307 38 1 9.7493 0.4652 -2.9776 39 1 8.5084 0.9473 -5.0694 40 1 7.4291 1.0173 -3.6561 41 1 8.0075 2.5228 -4.4092 42 1 6.2724 0.7066 1.3472 43 1 6.1604 2.4257 0.8552 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412244311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:03 Heat of formation + Delta-G solvation = -88.850001 kcal Electronic energy + Delta-G solvation = -22837.213380 eV Core-core repulsion = 19495.693345 eV Total energy + Delta-G solvation = -3341.520035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.80513 -39.07499 -36.51720 -35.46388 -34.80593 -32.59194 -31.95310 -30.98589 -27.80882 -27.39059 -26.36180 -23.39166 -22.29947 -22.01681 -20.37923 -19.59936 -19.46369 -17.96483 -17.08393 -16.87190 -15.90413 -15.64734 -15.12644 -14.88660 -14.66045 -14.08779 -13.84181 -13.80259 -13.41110 -13.18643 -12.98389 -12.61943 -12.46245 -12.38747 -12.34270 -12.10801 -11.76170 -11.64035 -11.47800 -11.33553 -10.99753 -10.96313 -10.75266 -10.49026 -9.98271 -9.93668 -9.64511 -9.29004 -9.08949 -8.82234 -8.38978 -8.19312 -6.62341 -4.27040 2.49619 2.81829 3.03351 3.34472 3.41063 3.54982 3.74360 4.22263 4.35817 4.37924 4.67779 4.68820 4.84051 4.88391 4.97699 5.12210 5.16001 5.32946 5.34135 5.39923 5.46409 5.56408 5.70197 5.71072 5.81033 5.87143 5.95020 6.00769 6.03539 6.20800 6.40243 6.61764 6.72936 6.87886 6.96813 6.97424 7.27810 7.31882 7.57986 8.06863 8.18492 8.35784 8.62894 8.85603 9.42506 10.78418 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030004 B = 0.003837 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.977509 B = 7295.308537 C = 7776.257329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.126 3.874 4 N -0.620 5.620 5 C 0.118 3.882 6 C -0.125 4.125 7 H 0.112 0.888 8 C 0.513 3.487 9 O -0.546 6.546 10 N -0.695 5.695 11 C 0.247 3.753 12 H 0.042 0.958 13 C -0.618 4.618 14 H 0.062 0.938 15 C 0.039 3.961 16 N -0.897 5.897 17 Si 1.040 2.960 18 H -0.284 1.284 19 H -0.280 1.280 20 H -0.269 1.269 21 C -0.140 4.140 22 C -0.143 4.143 23 C -0.145 4.145 24 C 0.521 3.479 25 O -0.535 6.535 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.394 0.606 36 H 0.269 0.731 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.030 0.970 40 H 0.047 0.953 41 H 0.051 0.949 42 H 0.109 0.891 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.707 -6.208 -1.177 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.004 3.996 4 N -0.354 5.354 5 C -0.005 4.005 6 C -0.147 4.147 7 H 0.130 0.870 8 C 0.297 3.703 9 O -0.425 6.425 10 N -0.342 5.342 11 C 0.144 3.856 12 H 0.060 0.940 13 C -0.656 4.656 14 H 0.080 0.920 15 C -0.168 4.168 16 N -0.530 5.530 17 Si 0.868 3.132 18 H -0.209 1.209 19 H -0.206 1.206 20 H -0.195 1.195 21 C -0.179 4.179 22 C -0.201 4.201 23 C -0.185 4.185 24 C 0.309 3.691 25 O -0.411 6.411 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.227 0.773 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.128 0.872 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -18.345 -4.582 -2.192 19.035 hybrid contribution -0.617 -1.530 1.339 2.125 sum -18.962 -6.112 -0.852 19.941 Atomic orbital electron populations 1.21692 0.95004 1.02011 1.01994 1.21918 0.96240 0.97174 1.02692 1.21433 0.77887 0.97049 1.03253 1.48350 1.06204 1.73402 1.07440 1.21984 0.87968 1.03891 0.86620 1.22273 0.94925 1.02252 0.95280 0.87009 1.19882 0.83867 0.82773 0.83809 1.90676 1.82209 1.37575 1.32000 1.46240 1.05256 1.45232 1.37483 1.19079 0.85786 0.91289 0.89479 0.93998 1.22086 1.00278 1.36825 1.06418 0.92007 1.25680 0.91558 0.97365 1.02160 1.70875 1.22427 1.38703 1.21031 0.84112 0.76145 0.76734 0.76212 1.20934 1.20615 1.19497 1.22369 0.97399 1.01058 0.97047 1.21883 0.98750 1.01228 0.98196 1.22357 0.95041 1.05784 0.95335 1.20856 0.89087 0.74829 0.84327 1.90710 1.78645 1.50649 1.21139 0.92477 0.92519 0.92416 0.91665 0.91566 0.90029 0.90226 0.88839 0.90047 0.77279 0.92055 0.91243 0.93043 0.95067 0.93350 0.92998 0.87241 0.87009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.14 -1.19 6.26 -26.73 -0.17 -1.36 16 3 C 0.13 1.19 5.93 -4.04 -0.02 1.17 16 4 N -0.62 -7.15 2.93 -172.39 -0.51 -7.66 16 5 C 0.12 1.31 6.69 -3.12 -0.02 1.29 16 6 C -0.13 -1.48 3.54 -90.14 -0.32 -1.80 16 7 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 8 C 0.51 8.36 5.66 -10.99 -0.06 8.30 16 9 O -0.55 -10.49 12.67 5.55 0.07 -10.42 16 10 N -0.70 -12.56 5.01 -54.94 -0.28 -12.83 16 11 C 0.25 5.52 1.82 -69.09 -0.13 5.39 16 12 H 0.04 1.03 6.26 -51.93 -0.32 0.70 16 13 C -0.62 -15.99 9.01 -34.44 -0.31 -16.30 16 14 H 0.06 1.67 7.96 -52.48 -0.42 1.26 16 15 C 0.04 1.07 5.32 -17.82 -0.09 0.97 16 16 N -0.90 -26.17 13.69 55.43 0.76 -25.41 16 17 Si 1.04 24.36 26.27 -169.99 -4.47 19.90 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.27 -5.84 5.67 56.52 0.32 -5.52 16 21 C -0.14 -2.95 5.27 -26.73 -0.14 -3.09 16 22 C -0.14 -2.69 8.53 37.16 0.32 -2.37 16 23 C -0.14 -1.76 6.40 -26.71 -0.17 -1.93 16 24 C 0.52 7.20 8.02 -10.83 -0.09 7.11 16 25 O -0.53 -9.17 17.59 5.56 0.10 -9.08 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.85 7.92 -51.93 -0.41 0.43 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.19 7.01 -51.93 -0.36 0.82 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.39 6.35 8.52 -40.82 -0.35 6.00 16 36 H 0.27 7.77 8.73 -40.82 -0.36 7.41 16 37 H 0.07 1.55 4.74 -51.93 -0.25 1.30 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.87 5.63 -51.93 -0.29 0.58 16 41 H 0.05 1.02 7.88 -51.93 -0.41 0.61 16 42 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.11 1.48 7.89 -51.93 -0.41 1.07 16 LS Contribution 342.52 15.07 5.16 5.16 Total: -1.00 -31.31 342.52 -7.10 -38.41 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.11 Total: 5.17 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -0.84 Total: -3.25 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.02 Total: -45.90 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.17 Total: -19.49 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -4.47 Total: 19.90 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.31 -7.10 -38.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412244311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.435 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds