Wall clock time and date at job start Tue Mar 31 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47041 * 2 1 4 4 N 1.46497 * 109.47046 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99952 * 264.54010 * 4 3 2 6 6 H 1.08000 * 120.00211 * 145.84875 * 5 4 3 7 7 C 1.38954 * 119.99817 * 325.85135 * 5 4 3 8 8 N 1.31414 * 119.99934 * 337.94705 * 7 5 4 9 9 Si 1.86802 * 120.00042 * 157.95350 * 7 5 4 10 10 H 1.48501 * 109.47375 * 59.99642 * 9 7 5 11 11 H 1.48500 * 109.46944 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46880 * 299.99787 * 9 7 5 13 13 C 1.34769 * 120.00194 * 84.53688 * 4 3 2 14 14 O 1.21297 * 120.00143 * 0.02562 * 13 4 3 15 15 C 1.50706 * 120.00267 * 179.97438 * 13 4 3 16 16 H 1.09005 * 110.85517 * 56.20876 * 15 13 4 17 17 C 1.54624 * 110.96842 * 292.38290 * 15 13 4 18 18 C 1.51289 * 104.19683 * 217.08035 * 17 15 13 19 19 O 1.21280 * 124.94421 * 196.27339 * 18 17 15 20 20 N 1.34417 * 110.11011 * 16.25279 * 18 17 15 21 21 C 1.46498 * 124.34636 * 180.67012 * 20 18 17 22 22 C 1.52998 * 109.47732 * 269.70151 * 21 20 18 23 23 C 1.52992 * 109.47431 * 180.02562 * 22 21 20 24 24 C 1.46768 * 111.30485 * 0.40893 * 20 18 17 25 25 H 1.08996 * 109.47446 * 60.00107 * 1 2 3 26 26 H 1.09000 * 109.47005 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47511 * 299.99680 * 1 2 3 28 28 H 1.09000 * 109.47058 * 239.99482 * 2 1 3 29 29 H 1.09009 * 109.47117 * 120.00040 * 2 1 3 30 30 H 1.09000 * 109.46707 * 59.99827 * 3 2 1 31 31 H 1.08996 * 109.46913 * 300.00220 * 3 2 1 32 32 H 0.96996 * 119.99571 * 179.97438 * 8 7 5 33 33 H 1.08997 * 110.48944 * 335.75717 * 17 15 13 34 34 H 1.09004 * 110.48943 * 98.27284 * 17 15 13 35 35 H 1.08998 * 109.47344 * 29.70530 * 21 20 18 36 36 H 1.09001 * 109.47082 * 149.69989 * 21 20 18 37 37 H 1.09007 * 109.46980 * 300.00364 * 22 21 20 38 38 H 1.09001 * 109.46969 * 59.99769 * 22 21 20 39 39 H 1.08995 * 109.47450 * 299.99754 * 23 22 21 40 40 H 1.08994 * 109.47269 * 60.00313 * 23 22 21 41 41 H 1.09004 * 109.46888 * 180.02562 * 23 22 21 42 42 H 1.08998 * 110.24455 * 101.98633 * 24 20 18 43 43 H 1.09000 * 110.24143 * 223.98455 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1909 1.5553 1.1811 6 1 5.1313 1.0403 1.3109 7 6 3.6762 2.3323 2.2117 8 7 2.8055 3.2805 1.9479 9 14 4.2221 2.0289 3.9723 10 1 5.6908 2.2230 4.0756 11 1 3.5312 2.9833 4.8761 12 1 3.8778 0.6386 4.3646 13 6 4.1783 1.3316 -1.1627 14 8 3.5715 1.2322 -2.2083 15 6 5.6854 1.3322 -1.1634 16 1 6.0741 0.5436 -0.5190 17 6 6.2384 2.7138 -0.7436 18 6 7.4633 2.9024 -1.6112 19 8 8.3393 3.7164 -1.4088 20 7 7.4396 2.0363 -2.6389 21 6 8.4827 1.9401 -3.6630 22 6 8.1427 2.8736 -4.8266 23 6 9.2317 2.7727 -5.8964 24 6 6.2376 1.1950 -2.5996 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 2.4460 3.8226 2.6675 33 1 5.5052 3.4950 -0.9438 34 1 6.5126 2.7104 0.3114 35 1 9.4416 2.2296 -3.2333 36 1 8.5421 0.9140 -4.0259 37 1 7.1837 2.5841 -5.2564 38 1 8.0832 3.8997 -4.4637 39 1 10.1908 3.0619 -5.4670 40 1 9.2907 1.7466 -6.2592 41 1 8.9896 3.4381 -6.7252 42 1 5.5035 1.5522 -3.3218 43 1 6.4970 0.1567 -2.8064 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413201631.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:33 Heat of formation + Delta-G solvation = -83.027680 kcal Electronic energy + Delta-G solvation = -23206.268386 eV Core-core repulsion = 19865.000826 eV Total energy + Delta-G solvation = -3341.267560 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.25642 -38.48014 -36.07561 -35.22958 -34.44121 -32.87950 -31.56888 -30.79838 -27.19772 -26.50856 -25.66101 -24.65473 -22.34489 -21.63130 -20.57138 -19.18207 -18.93289 -17.23399 -16.54323 -16.08134 -15.54244 -15.00261 -14.76835 -14.46300 -14.30741 -13.95296 -13.75388 -13.53540 -13.15638 -13.05952 -12.74758 -12.52693 -12.12400 -11.99624 -11.73384 -11.60667 -11.47811 -11.40083 -11.32650 -11.00084 -10.85783 -10.71374 -10.70295 -10.65858 -10.40384 -10.30080 -9.79894 -9.43542 -9.14548 -8.56457 -8.35205 -7.62630 -6.46866 -4.13952 2.98886 3.08025 3.17895 3.19028 3.27908 3.74170 4.03247 4.53031 4.78674 4.88450 4.96818 5.01024 5.14982 5.24848 5.44447 5.53677 5.57442 5.65060 5.71689 5.75041 5.79508 5.91666 5.95550 5.98930 6.09587 6.17285 6.23047 6.25958 6.44762 6.49759 6.54872 6.59106 6.64194 6.77713 6.85395 7.05722 7.29180 7.41565 7.42876 7.82038 8.26894 8.54833 8.97451 9.39640 9.82583 10.54136 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018057 B = 0.005208 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.232767 B = 5375.480597 C = 6549.255961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.114 3.886 4 N -0.429 5.429 5 C -0.345 4.345 6 H 0.091 0.909 7 C 0.048 3.952 8 N -0.853 5.853 9 Si 0.910 3.090 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.474 3.526 14 O -0.604 6.604 15 C -0.098 4.098 16 H 0.100 0.900 17 C -0.124 4.124 18 C 0.518 3.482 19 O -0.544 6.544 20 N -0.623 5.623 21 C 0.128 3.872 22 C -0.143 4.143 23 C -0.147 4.147 24 C 0.116 3.884 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.052 0.948 32 H 0.272 0.728 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.088 0.912 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.790 -4.559 -6.204 9.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.145 5.145 5 C -0.472 4.472 6 H 0.109 0.891 7 C -0.159 4.159 8 N -0.489 5.489 9 Si 0.736 3.264 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.262 3.738 14 O -0.491 6.491 15 C -0.119 4.119 16 H 0.118 0.882 17 C -0.164 4.164 18 C 0.307 3.693 19 O -0.422 6.422 20 N -0.357 5.357 21 C 0.005 3.995 22 C -0.182 4.182 23 C -0.205 4.205 24 C -0.007 4.007 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.864 -4.025 -6.519 9.075 hybrid contribution 0.166 -0.172 1.024 1.051 sum 5.030 -4.196 -5.495 8.550 Atomic orbital electron populations 1.21653 0.96581 1.00448 1.01407 1.21833 0.94747 0.99409 1.01305 1.21479 0.81152 0.94573 1.03694 1.43437 1.04876 1.61335 1.04836 1.19364 1.07717 1.29579 0.90556 0.89133 1.25292 0.96853 0.93427 1.00329 1.69921 1.29689 1.15817 1.33433 0.86260 0.79252 0.78494 0.82350 1.19543 1.20852 1.19789 1.19858 0.88133 0.81846 0.83934 1.90530 1.69814 1.56972 1.31750 1.21846 0.95571 0.98709 0.95818 0.88174 1.22126 0.95211 0.97825 1.01271 1.21265 0.87376 0.79372 0.81306 1.90656 1.40741 1.36801 1.74007 1.48401 1.22810 1.37816 1.26673 1.21357 0.90609 0.99673 0.87815 1.21930 0.99466 1.00836 0.95978 1.21684 0.98727 1.01670 0.98449 1.22040 0.85903 0.94627 0.98091 0.93133 0.93638 0.92997 0.92839 0.92379 0.87450 0.92974 0.91800 0.87622 0.87002 0.90376 0.90686 0.91548 0.91576 0.92637 0.92671 0.92565 0.89344 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.91 37.16 0.37 -1.94 16 2 C -0.13 -2.61 6.22 -26.73 -0.17 -2.78 16 3 C 0.11 2.58 4.90 -4.04 -0.02 2.56 16 4 N -0.43 -9.96 2.56 -114.81 -0.29 -10.25 16 5 C -0.34 -7.99 7.62 -14.93 -0.11 -8.11 16 6 H 0.09 2.00 6.87 -52.49 -0.36 1.64 16 7 C 0.05 1.13 4.92 -17.47 -0.09 1.04 16 8 N -0.85 -21.21 11.34 55.50 0.63 -20.58 16 9 Si 0.91 18.51 29.61 -169.99 -5.03 13.48 16 10 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 11 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 12 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 13 C 0.47 10.54 6.89 -10.99 -0.08 10.46 16 14 O -0.60 -14.60 15.17 5.54 0.08 -14.52 16 15 C -0.10 -1.79 2.61 -90.14 -0.24 -2.03 16 16 H 0.10 1.71 7.50 -51.93 -0.39 1.32 16 17 C -0.12 -2.36 5.50 -26.74 -0.15 -2.50 16 18 C 0.52 9.71 8.02 -10.86 -0.09 9.63 16 19 O -0.54 -11.69 17.59 5.56 0.10 -11.60 16 20 N -0.62 -9.91 2.93 -172.41 -0.51 -10.41 16 21 C 0.13 1.64 5.93 -4.04 -0.02 1.62 16 22 C -0.14 -1.73 6.26 -26.74 -0.17 -1.90 16 23 C -0.15 -1.38 9.91 37.15 0.37 -1.01 16 24 C 0.12 1.86 6.71 -3.12 -0.02 1.84 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 30 H 0.11 2.58 5.36 -51.93 -0.28 2.30 16 31 H 0.05 1.23 7.59 -51.93 -0.39 0.84 16 32 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 33 H 0.11 2.20 7.89 -51.93 -0.41 1.79 16 34 H 0.11 2.15 7.76 -51.93 -0.40 1.74 16 35 H 0.08 1.04 7.93 -51.93 -0.41 0.63 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 1.56 6.96 -51.93 -0.36 1.19 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -28.03 349.80 -7.37 -35.40 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -7.22 Total: 6.32 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -0.41 Total: 6.89 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: -0.17 Total: -41.24 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: 0.18 Total: -26.11 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.03 -7.37 -35.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413201631.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.627 kcal (2) G-P(sol) polarization free energy of solvation -28.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds