Wall clock time and date at job start Tue Mar 31 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47104 * 2 1 4 4 N 1.46506 * 109.46992 * 179.97438 * 3 2 1 5 5 C 1.37096 * 120.00148 * 264.55170 * 4 3 2 6 6 H 1.08003 * 120.00072 * 141.48329 * 5 4 3 7 7 C 1.38956 * 119.99981 * 321.48761 * 5 4 3 8 8 N 1.31411 * 119.99688 * 341.85705 * 7 5 4 9 9 Si 1.86796 * 119.99905 * 161.85837 * 7 5 4 10 10 H 1.48497 * 109.47109 * 89.99914 * 9 7 5 11 11 H 1.48496 * 109.47011 * 209.99584 * 9 7 5 12 12 H 1.48499 * 109.47267 * 329.99914 * 9 7 5 13 13 C 1.34781 * 119.99737 * 84.55497 * 4 3 2 14 14 O 1.21292 * 120.00284 * 359.97438 * 13 4 3 15 15 C 1.50704 * 119.99768 * 179.97438 * 13 4 3 16 16 H 1.09001 * 110.88231 * 297.64386 * 15 13 4 17 17 C 1.54635 * 110.96813 * 61.45139 * 15 13 4 18 18 C 1.51286 * 104.19024 * 142.91501 * 17 15 13 19 19 O 1.21284 * 124.93715 * 163.78423 * 18 17 15 20 20 N 1.34417 * 110.11819 * 343.74988 * 18 17 15 21 21 C 1.46500 * 124.34935 * 179.56907 * 20 18 17 22 22 C 1.53003 * 109.46998 * 89.97542 * 21 20 18 23 23 C 1.53000 * 109.47076 * 180.02562 * 22 21 20 24 24 C 1.46761 * 111.30229 * 359.59165 * 20 18 17 25 25 H 1.09006 * 109.46610 * 60.00294 * 1 2 3 26 26 H 1.09005 * 109.47149 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47586 * 300.00373 * 1 2 3 28 28 H 1.09000 * 109.47586 * 239.99627 * 2 1 3 29 29 H 1.09002 * 109.47076 * 119.99846 * 2 1 3 30 30 H 1.08996 * 109.46864 * 59.99764 * 3 2 1 31 31 H 1.08998 * 109.46873 * 299.99127 * 3 2 1 32 32 H 0.97002 * 119.99496 * 180.02562 * 8 7 5 33 33 H 1.08999 * 110.48720 * 261.59096 * 17 15 13 34 34 H 1.08996 * 110.48348 * 24.11078 * 17 15 13 35 35 H 1.09000 * 109.47263 * 209.97175 * 21 20 18 36 36 H 1.09001 * 109.47075 * 329.97511 * 21 20 18 37 37 H 1.09004 * 109.47114 * 300.00574 * 22 21 20 38 38 H 1.09004 * 109.47106 * 59.99549 * 22 21 20 39 39 H 1.08993 * 109.47406 * 60.00109 * 23 22 21 40 40 H 1.08997 * 109.46675 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.47054 * 299.99553 * 23 22 21 42 42 H 1.09007 * 110.24519 * 258.02001 * 24 20 18 43 43 H 1.08995 * 110.24954 * 136.01969 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.5554 1.1828 6 1 5.0937 0.9852 1.3398 7 6 3.7216 2.4033 2.1790 8 7 2.8567 3.3480 1.8847 9 14 4.3212 2.2004 3.9364 10 1 5.5341 3.0314 4.1447 11 1 3.2564 2.6347 4.8760 12 1 4.6497 0.7738 4.1858 13 6 4.1793 1.3315 -1.1611 14 8 3.5733 1.2313 -2.2070 15 6 5.6864 1.3321 -1.1605 16 1 6.0744 2.2753 -0.7759 17 6 6.2399 0.1354 -0.3525 18 6 7.4656 -0.2989 -1.1257 19 8 8.3415 -1.0174 -0.6926 20 7 7.4423 0.2268 -2.3626 21 6 8.4838 0.0144 -3.3707 22 6 8.1433 -1.2237 -4.2027 23 6 9.2313 -1.4460 -5.2552 24 6 6.2399 1.0414 -2.5731 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 2.5300 3.9401 2.5801 33 1 6.5153 0.4496 0.6542 34 1 5.5064 -0.6698 -0.3127 35 1 8.5413 0.8858 -4.0230 36 1 9.4438 -0.1331 -2.8759 37 1 8.0857 -2.0952 -3.5504 38 1 7.1832 -1.0762 -4.6974 39 1 10.1910 -1.5937 -4.7601 40 1 8.9884 -2.3277 -5.8481 41 1 9.2892 -0.5746 -5.9075 42 1 5.5065 0.4870 -3.1589 43 1 6.4987 1.9732 -3.0759 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413201632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:37 Heat of formation + Delta-G solvation = -80.777008 kcal Electronic energy + Delta-G solvation = -23245.141818 eV Core-core repulsion = 19903.971855 eV Total energy + Delta-G solvation = -3341.169964 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.33032 -38.48866 -36.12093 -35.21019 -34.51032 -32.89608 -31.60948 -30.80410 -27.25357 -26.58119 -25.60365 -24.70737 -22.31153 -21.66468 -20.67534 -19.16016 -19.01600 -17.31602 -16.50293 -16.01899 -15.72780 -15.03681 -14.80304 -14.45775 -14.30170 -13.99404 -13.78137 -13.56302 -13.23114 -13.05939 -12.67306 -12.54191 -12.23695 -12.14967 -11.79335 -11.62802 -11.44106 -11.37879 -11.22966 -11.04073 -10.99631 -10.77807 -10.68868 -10.58535 -10.40079 -10.25139 -9.79763 -9.45282 -9.14070 -8.57691 -8.39831 -7.56885 -6.45553 -4.18616 2.90839 3.06429 3.17840 3.21321 3.23518 3.75138 4.03243 4.49272 4.77155 4.90282 4.91511 4.95206 5.11562 5.21462 5.41497 5.49204 5.53715 5.61223 5.68253 5.75454 5.81472 5.88806 5.92126 5.99901 6.05353 6.08372 6.21546 6.26026 6.31322 6.47688 6.51292 6.53111 6.64471 6.77972 6.80173 7.06322 7.31023 7.37121 7.42860 7.86698 8.27983 8.47775 8.98362 9.39793 9.83488 10.56032 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017637 B = 0.005207 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.198047 B = 5376.133283 C = 6331.581137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.118 3.882 4 N -0.430 5.430 5 C -0.351 4.351 6 H 0.098 0.902 7 C 0.047 3.953 8 N -0.858 5.858 9 Si 0.910 3.090 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.267 1.267 13 C 0.478 3.522 14 O -0.603 6.603 15 C -0.097 4.097 16 H 0.109 0.891 17 C -0.136 4.136 18 C 0.518 3.482 19 O -0.544 6.544 20 N -0.621 5.621 21 C 0.127 3.873 22 C -0.143 4.143 23 C -0.148 4.148 24 C 0.117 3.883 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.052 0.948 32 H 0.270 0.730 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.087 0.913 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.881 -3.783 -6.349 8.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C -0.005 4.005 4 N -0.146 5.146 5 C -0.479 4.479 6 H 0.115 0.885 7 C -0.159 4.159 8 N -0.493 5.493 9 Si 0.736 3.264 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.191 1.191 13 C 0.266 3.734 14 O -0.490 6.490 15 C -0.119 4.119 16 H 0.127 0.873 17 C -0.177 4.177 18 C 0.307 3.693 19 O -0.422 6.422 20 N -0.355 5.355 21 C 0.005 3.995 22 C -0.182 4.182 23 C -0.206 4.206 24 C -0.006 4.006 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.956 -4.035 -6.555 9.155 hybrid contribution 0.172 0.119 0.998 1.020 sum 5.128 -3.916 -5.557 8.515 Atomic orbital electron populations 1.21653 0.96572 1.00456 1.01395 1.21845 0.94772 0.99444 1.01318 1.21415 0.81306 0.94399 1.03406 1.43391 1.04753 1.61662 1.04825 1.19725 1.11101 1.25144 0.91904 0.88458 1.25407 0.96632 0.93509 1.00396 1.69919 1.30614 1.14867 1.33937 0.86198 0.78645 0.79206 0.82339 1.20114 1.20678 1.19107 1.19907 0.88089 0.81425 0.83972 1.90531 1.69910 1.56769 1.31777 1.21867 0.95605 1.00073 0.94311 0.87259 1.22389 0.95656 0.99041 1.00577 1.21175 0.87352 0.78686 0.82081 1.90662 1.40754 1.37851 1.72956 1.48407 1.22892 1.50662 1.13551 1.21375 0.90607 0.97739 0.89785 1.21930 0.99502 0.98821 0.97918 1.21685 0.98715 1.01601 0.98550 1.22039 0.85711 0.95274 0.97567 0.93140 0.93636 0.92994 0.92864 0.92344 0.87845 0.92964 0.91944 0.86837 0.87888 0.90564 0.90339 0.91632 0.91544 0.92615 0.92562 0.92630 0.89532 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.91 37.15 0.37 -1.95 16 2 C -0.14 -2.65 6.22 -26.73 -0.17 -2.81 16 3 C 0.12 2.68 4.88 -4.04 -0.02 2.66 16 4 N -0.43 -10.03 2.53 -114.80 -0.29 -10.32 16 5 C -0.35 -8.20 8.45 -14.93 -0.13 -8.32 16 6 H 0.10 2.14 4.54 -52.48 -0.24 1.90 16 7 C 0.05 1.12 4.98 -17.47 -0.09 1.04 16 8 N -0.86 -21.49 11.41 55.50 0.63 -20.86 16 9 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 10 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 13 C 0.48 10.66 6.93 -10.98 -0.08 10.58 16 14 O -0.60 -14.60 15.24 5.55 0.08 -14.51 16 15 C -0.10 -1.78 2.81 -90.13 -0.25 -2.03 16 16 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 17 C -0.14 -2.42 4.92 -26.74 -0.13 -2.55 16 18 C 0.52 9.29 8.02 -10.86 -0.09 9.21 16 19 O -0.54 -11.21 17.60 5.55 0.10 -11.11 16 20 N -0.62 -9.61 2.93 -172.41 -0.51 -10.11 16 21 C 0.13 1.59 5.93 -4.04 -0.02 1.57 16 22 C -0.14 -1.66 6.26 -26.73 -0.17 -1.83 16 23 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 24 C 0.12 1.86 6.66 -3.12 -0.02 1.84 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.10 2.49 5.54 -51.93 -0.29 2.21 16 31 H 0.05 1.24 7.59 -51.93 -0.39 0.84 16 32 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 33 H 0.11 2.00 6.45 -51.93 -0.34 1.67 16 34 H 0.10 1.88 7.89 -51.93 -0.41 1.47 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 1.49 7.06 -51.92 -0.37 1.12 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -28.23 347.65 -7.27 -35.50 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.07 Total: 6.21 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -0.42 Total: 6.41 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -0.16 Total: -41.29 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: 0.18 Total: -25.62 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.23 -7.27 -35.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413201632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.277 kcal (2) G-P(sol) polarization free energy of solvation -28.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds