Wall clock time and date at job start Tue Mar 31 2020 06:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47104 * 2 1 4 4 N 1.46506 * 109.46992 * 179.97438 * 3 2 1 5 5 C 1.37096 * 120.00148 * 264.55170 * 4 3 2 6 6 H 1.08003 * 120.00072 * 141.48329 * 5 4 3 7 7 C 1.38956 * 119.99981 * 321.48761 * 5 4 3 8 8 N 1.31411 * 119.99688 * 341.85705 * 7 5 4 9 9 Si 1.86796 * 119.99905 * 161.85837 * 7 5 4 10 10 H 1.48497 * 109.47109 * 89.99914 * 9 7 5 11 11 H 1.48496 * 109.47011 * 209.99584 * 9 7 5 12 12 H 1.48499 * 109.47267 * 329.99914 * 9 7 5 13 13 C 1.34781 * 119.99737 * 84.55497 * 4 3 2 14 14 O 1.21292 * 120.00284 * 359.97438 * 13 4 3 15 15 C 1.50704 * 119.99768 * 179.97438 * 13 4 3 16 16 H 1.09001 * 110.88231 * 297.64386 * 15 13 4 17 17 C 1.54635 * 110.96813 * 61.45139 * 15 13 4 18 18 C 1.51286 * 104.19024 * 142.91501 * 17 15 13 19 19 O 1.21284 * 124.93715 * 163.78423 * 18 17 15 20 20 N 1.34417 * 110.11819 * 343.74988 * 18 17 15 21 21 C 1.46500 * 124.34935 * 179.56907 * 20 18 17 22 22 C 1.53003 * 109.46998 * 89.97542 * 21 20 18 23 23 C 1.53000 * 109.47076 * 180.02562 * 22 21 20 24 24 C 1.46761 * 111.30229 * 359.59165 * 20 18 17 25 25 H 1.09006 * 109.46610 * 60.00294 * 1 2 3 26 26 H 1.09005 * 109.47149 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47586 * 300.00373 * 1 2 3 28 28 H 1.09000 * 109.47586 * 239.99627 * 2 1 3 29 29 H 1.09002 * 109.47076 * 119.99846 * 2 1 3 30 30 H 1.08996 * 109.46864 * 59.99764 * 3 2 1 31 31 H 1.08998 * 109.46873 * 299.99127 * 3 2 1 32 32 H 0.97002 * 119.99496 * 180.02562 * 8 7 5 33 33 H 1.08999 * 110.48720 * 261.59096 * 17 15 13 34 34 H 1.08996 * 110.48348 * 24.11078 * 17 15 13 35 35 H 1.09000 * 109.47263 * 209.97175 * 21 20 18 36 36 H 1.09001 * 109.47075 * 329.97511 * 21 20 18 37 37 H 1.09004 * 109.47114 * 300.00574 * 22 21 20 38 38 H 1.09004 * 109.47106 * 59.99549 * 22 21 20 39 39 H 1.08993 * 109.47406 * 60.00109 * 23 22 21 40 40 H 1.08997 * 109.46675 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.47054 * 299.99553 * 23 22 21 42 42 H 1.09007 * 110.24519 * 258.02001 * 24 20 18 43 43 H 1.08995 * 110.24954 * 136.01969 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.5554 1.1828 6 1 5.0937 0.9852 1.3398 7 6 3.7216 2.4033 2.1790 8 7 2.8567 3.3480 1.8847 9 14 4.3212 2.2004 3.9364 10 1 5.5341 3.0314 4.1447 11 1 3.2564 2.6347 4.8760 12 1 4.6497 0.7738 4.1858 13 6 4.1793 1.3315 -1.1611 14 8 3.5733 1.2313 -2.2070 15 6 5.6864 1.3321 -1.1605 16 1 6.0744 2.2753 -0.7759 17 6 6.2399 0.1354 -0.3525 18 6 7.4656 -0.2989 -1.1257 19 8 8.3415 -1.0174 -0.6926 20 7 7.4423 0.2268 -2.3626 21 6 8.4838 0.0144 -3.3707 22 6 8.1433 -1.2237 -4.2027 23 6 9.2313 -1.4460 -5.2552 24 6 6.2399 1.0414 -2.5731 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 2.5300 3.9401 2.5801 33 1 6.5153 0.4496 0.6542 34 1 5.5064 -0.6698 -0.3127 35 1 8.5413 0.8858 -4.0230 36 1 9.4438 -0.1331 -2.8759 37 1 8.0857 -2.0952 -3.5504 38 1 7.1832 -1.0762 -4.6974 39 1 10.1910 -1.5937 -4.7601 40 1 8.9884 -2.3277 -5.8481 41 1 9.2892 -0.5746 -5.9075 42 1 5.5065 0.4870 -3.1589 43 1 6.4987 1.9732 -3.0759 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413201632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:36 Heat of formation + Delta-G solvation = -95.741924 kcal Electronic energy + Delta-G solvation = -23245.790746 eV Core-core repulsion = 19903.971855 eV Total energy + Delta-G solvation = -3341.818891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.79315 -40.17735 -37.57917 -36.88837 -35.73952 -34.49685 -33.26388 -32.16081 -28.69219 -27.92956 -27.08285 -26.31304 -23.73154 -22.69821 -22.27679 -20.84822 -20.45084 -18.95139 -18.00255 -17.56422 -17.12420 -16.58797 -16.38915 -15.90667 -15.74578 -15.44817 -15.34641 -14.74446 -14.60350 -14.50234 -14.27793 -13.80617 -13.75632 -13.30948 -13.12691 -13.03457 -12.93467 -12.70500 -12.58401 -12.50740 -12.37052 -12.16139 -12.14549 -12.03410 -11.85943 -11.64811 -11.49054 -10.98909 -10.90198 -10.31189 -9.72838 -9.40957 -8.27259 -6.05077 1.43223 1.47956 1.51989 1.61160 1.93961 2.03957 2.33218 2.87221 3.09061 3.40453 3.60179 3.97174 4.02588 4.03000 4.07937 4.21103 4.35335 4.36321 4.49792 4.53130 4.57882 4.61928 4.65043 4.70255 4.84784 4.88953 4.91227 5.00167 5.07787 5.11806 5.15043 5.18288 5.24868 5.34341 5.39316 5.52178 5.58963 5.62598 6.02614 6.07131 6.45742 7.08828 7.15459 7.59787 8.03261 8.75249 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017637 B = 0.005207 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.198047 B = 5376.133283 C = 6331.581137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.119 3.881 4 N -0.443 5.443 5 C -0.359 4.359 6 H 0.110 0.890 7 C 0.009 3.991 8 N -0.890 5.890 9 Si 0.971 3.029 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.262 1.262 13 C 0.470 3.530 14 O -0.627 6.627 15 C -0.092 4.092 16 H 0.114 0.886 17 C -0.130 4.130 18 C 0.518 3.482 19 O -0.574 6.574 20 N -0.612 5.612 21 C 0.120 3.880 22 C -0.139 4.139 23 C -0.142 4.142 24 C 0.127 3.873 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.032 0.968 32 H 0.271 0.729 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.796 -4.021 -6.714 9.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.164 4.164 3 C -0.005 4.005 4 N -0.159 5.159 5 C -0.486 4.486 6 H 0.127 0.873 7 C -0.195 4.195 8 N -0.527 5.527 9 Si 0.795 3.205 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.186 1.186 13 C 0.259 3.741 14 O -0.515 6.515 15 C -0.114 4.114 16 H 0.132 0.868 17 C -0.170 4.170 18 C 0.307 3.693 19 O -0.454 6.454 20 N -0.344 5.344 21 C 0.000 4.000 22 C -0.178 4.178 23 C -0.200 4.200 24 C 0.004 3.996 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.133 0.867 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.876 -4.271 -6.948 10.052 hybrid contribution -0.141 0.212 1.038 1.069 sum 5.734 -4.058 -5.910 9.181 Atomic orbital electron populations 1.21611 0.93856 1.02229 1.01723 1.21734 0.97139 0.97022 1.00510 1.21363 0.81514 0.96001 1.01573 1.43641 1.05102 1.61804 1.05380 1.20072 1.11484 1.25109 0.91947 0.87282 1.26125 0.96735 0.93089 1.03514 1.70018 1.31973 1.15782 1.34933 0.85265 0.77967 0.79210 0.78057 1.19813 1.20928 1.18563 1.20498 0.89717 0.80543 0.83313 1.90506 1.70917 1.57630 1.32430 1.21786 0.92827 1.00487 0.96282 0.86834 1.22284 0.95546 0.98484 1.00714 1.21089 0.86861 0.78536 0.82861 1.90646 1.41715 1.39320 1.73746 1.48463 1.23089 1.49534 1.13325 1.21682 0.89412 0.99459 0.89484 1.21881 1.00505 0.97363 0.98036 1.21652 0.97702 1.02680 0.97968 1.21954 0.85522 0.96257 0.95895 0.92905 0.91117 0.92600 0.93987 0.92625 0.89319 0.94919 0.91941 0.86748 0.88678 0.87554 0.90587 0.93975 0.91707 0.92361 0.91913 0.91011 0.90597 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.28 9.91 71.98 0.71 -3.57 16 2 C -0.13 -4.92 6.22 30.59 0.19 -4.73 16 3 C 0.12 5.50 4.88 86.38 0.42 5.92 16 4 N -0.44 -20.88 2.53 -635.51 -1.61 -22.48 16 5 C -0.36 -16.70 8.45 84.04 0.71 -15.99 16 6 H 0.11 4.72 4.54 -2.91 -0.01 4.71 16 7 C 0.01 0.43 4.98 84.93 0.42 0.85 16 8 N -0.89 -44.96 11.41 21.67 0.25 -44.72 16 9 Si 0.97 37.68 29.59 68.60 2.03 39.71 16 10 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 11 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 12 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 13 C 0.47 21.05 6.93 87.66 0.61 21.65 16 14 O -0.63 -30.57 15.24 -3.07 -0.05 -30.61 16 15 C -0.09 -3.32 2.81 -10.48 -0.03 -3.35 16 16 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 17 C -0.13 -4.56 4.92 30.59 0.15 -4.41 16 18 C 0.52 18.17 8.02 87.90 0.71 18.87 16 19 O -0.57 -23.37 17.60 -3.04 -0.05 -23.42 16 20 N -0.61 -17.96 2.93 -817.98 -2.40 -20.36 16 21 C 0.12 2.75 5.93 86.38 0.51 3.27 16 22 C -0.14 -3.02 6.26 30.60 0.19 -2.83 16 23 C -0.14 -2.25 9.91 71.98 0.71 -1.53 16 24 C 0.13 3.83 6.66 86.83 0.58 4.40 16 25 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 27 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 29 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.09 4.37 5.54 -2.39 -0.01 4.36 16 31 H 0.03 1.59 7.59 -2.39 -0.02 1.57 16 32 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 33 H 0.11 3.96 6.45 -2.39 -0.02 3.94 16 34 H 0.09 3.49 7.89 -2.39 -0.02 3.47 16 35 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 1.83 7.93 -2.39 -0.02 1.81 16 37 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 2.53 7.06 -2.38 -0.02 2.51 16 43 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -60.44 347.65 5.04 -55.39 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.98 Total: 27.92 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: 5.89 Total: 18.57 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -3.76 Total: -87.56 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -0.10 Total: -54.04 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Total: -60.44 5.04 -55.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413201632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.347 kcal (2) G-P(sol) polarization free energy of solvation -60.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds