Wall clock time and date at job start Tue Mar 31 2020 06:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47193 * 2 1 4 4 H 1.08997 * 109.46752 * 305.00271 * 3 2 1 5 5 C 1.53000 * 109.47177 * 184.99840 * 3 2 1 6 6 N 1.46500 * 109.46795 * 64.99848 * 3 2 1 7 7 C 1.47319 * 126.69075 * 239.99756 * 6 3 2 8 8 C 1.51581 * 103.59290 * 180.02562 * 7 6 3 9 9 O 1.21233 * 127.15808 * 180.02562 * 8 7 6 10 10 N 1.34769 * 105.68369 * 359.74872 * 8 7 6 11 11 C 1.46506 * 124.17557 * 180.27291 * 10 8 7 12 12 C 1.52995 * 109.47255 * 270.17765 * 11 10 8 13 13 C 1.53006 * 109.46966 * 299.99802 * 12 11 10 14 14 C 1.53001 * 109.47197 * 59.99866 * 12 11 10 15 15 C 1.50696 * 109.47419 * 180.02562 * 12 11 10 16 16 H 1.08003 * 119.99496 * 359.97438 * 15 12 11 17 17 C 1.37873 * 120.00386 * 179.97438 * 15 12 11 18 18 N 1.31520 * 120.00027 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00374 * 179.97438 * 17 15 12 20 20 H 1.48508 * 109.46776 * 60.00263 * 19 17 15 21 21 H 1.48499 * 109.47306 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47175 * 300.00755 * 19 17 15 23 23 C 1.33787 * 111.64565 * 0.42848 * 10 8 7 24 24 O 1.21543 * 123.77176 * 179.80520 * 23 10 8 25 25 H 1.08994 * 109.46748 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46954 * 300.00483 * 1 2 3 27 27 H 1.09003 * 109.47011 * 59.99912 * 1 2 3 28 28 H 1.08999 * 109.47150 * 240.00250 * 2 1 3 29 29 H 1.08995 * 109.47285 * 119.99497 * 2 1 3 30 30 H 1.08996 * 109.46727 * 59.99949 * 5 3 2 31 31 H 1.09002 * 109.47009 * 180.02562 * 5 3 2 32 32 H 1.08997 * 109.47179 * 300.00176 * 5 3 2 33 33 H 1.08993 * 110.59808 * 298.55222 * 7 6 3 34 34 H 1.08999 * 110.59745 * 61.49605 * 7 6 3 35 35 H 1.09001 * 109.47034 * 30.17505 * 11 10 8 36 36 H 1.09001 * 109.46722 * 150.17279 * 11 10 8 37 37 H 1.09008 * 109.47033 * 59.99911 * 13 12 11 38 38 H 1.08995 * 109.47235 * 179.97438 * 13 12 11 39 39 H 1.08996 * 109.47513 * 300.00258 * 13 12 11 40 40 H 1.08994 * 109.46858 * 60.00353 * 14 12 11 41 41 H 1.08996 * 109.46804 * 180.02562 * 14 12 11 42 42 H 1.08998 * 109.47179 * 300.00323 * 14 12 11 43 43 H 0.96991 * 120.00221 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4444 -0.1257 6 7 1.6524 2.0975 1.2518 7 6 0.8095 3.2974 1.3932 8 6 0.7482 3.5152 2.8920 9 8 0.1589 4.3962 3.4804 10 7 1.4799 2.5220 3.4347 11 6 1.6864 2.3439 4.8741 12 6 2.9328 3.1167 5.3101 13 6 4.1517 2.5887 4.5509 14 6 2.7447 4.6035 5.0020 15 6 3.1455 2.9330 6.7906 16 1 2.4599 2.3260 7.3634 17 6 4.2152 3.5397 7.4139 18 7 5.0498 4.2792 6.7165 19 14 4.4785 3.3125 9.2493 20 1 4.6604 1.8693 9.5483 21 1 5.6883 4.0625 9.6724 22 1 3.2957 3.8254 9.9863 23 6 1.9973 1.7208 2.4964 24 8 2.6965 0.7573 2.7413 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8532 0.9571 -1.0570 31 1 3.9282 2.4721 -0.1252 32 1 3.9995 0.9053 0.7161 33 1 1.2730 4.1518 0.9002 34 1 -0.1871 3.1155 0.9909 35 1 0.8180 2.7201 5.4150 36 1 1.8203 1.2846 5.0936 37 1 3.9981 2.7212 3.4798 38 1 5.0396 3.1395 4.8611 39 1 4.2857 1.5295 4.7703 40 1 1.8764 4.9796 5.5429 41 1 3.6329 5.1539 5.3122 42 1 2.5911 4.7360 3.9310 43 1 5.8021 4.7063 7.1551 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420046384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:25 Heat of formation + Delta-G solvation = -48.702018 kcal Electronic energy + Delta-G solvation = -24244.644088 eV Core-core repulsion = 20904.865001 eV Total energy + Delta-G solvation = -3339.779088 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.99980 -38.37213 -36.96702 -35.68047 -35.21218 -32.77440 -30.94631 -30.03870 -27.28890 -26.03279 -25.60234 -25.03495 -23.88013 -22.37668 -21.61327 -19.43856 -18.55603 -17.02244 -16.75480 -16.06205 -15.85049 -15.53512 -14.82325 -14.64763 -14.31392 -13.89310 -13.79946 -13.56311 -13.40353 -13.22154 -12.69230 -12.60001 -12.31915 -12.08858 -11.90249 -11.39180 -11.21865 -11.13460 -11.10765 -11.05152 -10.72313 -10.63268 -10.32113 -10.22220 -10.13302 -9.96097 -9.60300 -9.40306 -8.84663 -8.73403 -8.55693 -8.29187 -5.93476 -4.04798 2.07361 2.46983 3.31198 3.34471 3.38652 3.42219 3.54252 4.33011 4.45182 4.58802 4.86856 4.94757 5.08349 5.16091 5.21187 5.32449 5.44747 5.47730 5.57301 5.72930 5.79047 5.91055 6.01863 6.12555 6.18650 6.22697 6.33469 6.46470 6.50634 6.74367 6.90095 7.03071 7.14574 7.19113 7.52370 7.64259 7.72833 7.76794 7.84804 8.14981 8.21350 8.45979 8.59361 8.94573 9.60011 11.07514 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026499 B = 0.005163 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.404517 B = 5422.405632 C = 5760.304936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.185 3.815 4 H 0.091 0.909 5 C -0.171 4.171 6 N -0.630 5.630 7 C 0.061 3.939 8 C 0.519 3.481 9 O -0.473 6.473 10 N -0.563 5.563 11 C 0.129 3.871 12 C 0.055 3.945 13 C -0.118 4.118 14 C -0.122 4.122 15 C -0.507 4.507 16 H 0.056 0.944 17 C 0.068 3.932 18 N -0.884 5.884 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.703 3.297 24 O -0.534 6.534 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.001 0.999 38 H 0.079 0.921 39 H 0.030 0.970 40 H 0.029 0.971 41 H 0.082 0.918 42 H -0.001 1.001 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.401 -4.370 -15.926 18.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C 0.083 3.917 4 H 0.109 0.891 5 C -0.229 4.229 6 N -0.371 5.371 7 C -0.065 4.065 8 C 0.305 3.695 9 O -0.343 6.343 10 N -0.307 5.307 11 C 0.009 3.991 12 C 0.054 3.946 13 C -0.176 4.176 14 C -0.180 4.180 15 C -0.545 4.545 16 H 0.074 0.926 17 C -0.134 4.134 18 N -0.522 5.522 19 Si 0.722 3.278 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C 0.405 3.595 24 O -0.407 6.407 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.020 0.980 38 H 0.097 0.903 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.100 0.900 42 H 0.018 0.982 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.121 -4.385 -15.457 17.575 hybrid contribution 0.182 0.034 0.956 0.974 sum -6.939 -4.352 -14.501 16.655 Atomic orbital electron populations 1.21721 0.95693 1.01612 1.01488 1.22001 0.96269 0.96135 1.03756 1.20863 0.95383 0.92854 0.82604 0.89093 1.22224 0.94693 1.02866 1.03141 1.47787 1.53855 1.29851 1.05607 1.22472 0.97997 0.90416 0.95649 1.20675 0.78008 0.81146 0.89644 1.90789 1.42177 1.32022 1.69341 1.46602 1.46620 1.27131 1.10353 1.22202 1.01581 1.02295 0.72985 1.18463 0.89161 0.91671 0.95341 1.21721 1.01816 0.99507 0.94567 1.21768 1.01907 0.99142 0.95167 1.20886 1.10936 1.30819 0.91880 0.92583 1.24870 0.95688 0.94873 0.97967 1.69824 1.15010 1.32151 1.35236 0.86636 0.77486 0.78211 0.85505 1.20287 1.21350 1.20304 1.15850 0.80091 0.82787 0.80725 1.90927 1.39321 1.27982 1.82471 0.92739 0.92889 0.92967 0.90743 0.89882 0.91425 0.92245 0.90502 0.86891 0.87009 0.90302 0.90079 0.98016 0.90266 0.95113 0.95214 0.89979 0.98239 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.80 37.16 0.36 -0.97 16 2 C -0.14 -1.44 5.39 -26.73 -0.14 -1.58 16 3 C 0.18 1.90 2.97 -67.93 -0.20 1.70 16 4 H 0.09 0.67 8.12 -51.93 -0.42 0.25 16 5 C -0.17 -1.89 9.23 37.16 0.34 -1.54 16 6 N -0.63 -8.32 2.34 -172.39 -0.40 -8.73 16 7 C 0.06 0.71 7.65 -4.31 -0.03 0.68 16 8 C 0.52 8.81 6.66 -10.56 -0.07 8.74 16 9 O -0.47 -9.28 16.85 5.60 0.09 -9.18 16 10 N -0.56 -10.64 2.13 -120.73 -0.26 -10.90 16 11 C 0.13 2.79 4.67 -4.04 -0.02 2.77 16 12 C 0.05 1.36 0.57 -155.66 -0.09 1.27 16 13 C -0.12 -3.00 7.12 37.16 0.26 -2.74 16 14 C -0.12 -3.06 7.25 37.16 0.27 -2.80 16 15 C -0.51 -13.74 8.01 -34.44 -0.28 -14.01 16 16 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.07 1.84 5.15 -17.82 -0.09 1.75 16 18 N -0.88 -24.77 9.36 55.43 0.52 -24.25 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.70 12.49 6.20 -88.02 -0.55 11.94 16 24 O -0.53 -10.95 13.66 5.33 0.07 -10.88 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.56 7.75 -51.93 -0.40 0.15 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.10 6.81 -51.93 -0.35 0.74 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.10 6.96 -51.93 -0.36 0.74 16 33 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.69 8.01 -51.93 -0.42 1.27 16 36 H 0.08 1.77 7.86 -51.93 -0.41 1.36 16 37 H 0.00 0.02 6.18 -51.92 -0.32 -0.30 16 38 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 39 H 0.03 0.79 8.10 -51.93 -0.42 0.37 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 42 H 0.00 -0.03 6.18 -51.93 -0.32 -0.35 16 43 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 335.15 15.07 5.05 5.05 Total: -1.00 -31.10 335.15 -7.15 -38.25 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.98 Total: -0.84 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -0.23 Total: 5.22 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: -0.14 Total: -43.87 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.17 Total: -20.06 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.10 -7.15 -38.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420046384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.452 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds