Wall clock time and date at job start Tue Mar 31 2020 06:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47193 * 2 1 4 4 H 1.08997 * 109.46752 * 305.00271 * 3 2 1 5 5 C 1.53000 * 109.47177 * 184.99840 * 3 2 1 6 6 N 1.46500 * 109.46795 * 64.99848 * 3 2 1 7 7 C 1.47319 * 126.69075 * 239.99756 * 6 3 2 8 8 C 1.51581 * 103.59290 * 180.02562 * 7 6 3 9 9 O 1.21233 * 127.15808 * 180.02562 * 8 7 6 10 10 N 1.34769 * 105.68369 * 359.74872 * 8 7 6 11 11 C 1.46506 * 124.17557 * 180.27291 * 10 8 7 12 12 C 1.52995 * 109.47255 * 270.17765 * 11 10 8 13 13 C 1.53006 * 109.46966 * 299.99802 * 12 11 10 14 14 C 1.53001 * 109.47197 * 59.99866 * 12 11 10 15 15 C 1.50696 * 109.47419 * 180.02562 * 12 11 10 16 16 H 1.08003 * 119.99496 * 359.97438 * 15 12 11 17 17 C 1.37873 * 120.00386 * 179.97438 * 15 12 11 18 18 N 1.31520 * 120.00027 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00374 * 179.97438 * 17 15 12 20 20 H 1.48508 * 109.46776 * 60.00263 * 19 17 15 21 21 H 1.48499 * 109.47306 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47175 * 300.00755 * 19 17 15 23 23 C 1.33787 * 111.64565 * 0.42848 * 10 8 7 24 24 O 1.21543 * 123.77176 * 179.80520 * 23 10 8 25 25 H 1.08994 * 109.46748 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46954 * 300.00483 * 1 2 3 27 27 H 1.09003 * 109.47011 * 59.99912 * 1 2 3 28 28 H 1.08999 * 109.47150 * 240.00250 * 2 1 3 29 29 H 1.08995 * 109.47285 * 119.99497 * 2 1 3 30 30 H 1.08996 * 109.46727 * 59.99949 * 5 3 2 31 31 H 1.09002 * 109.47009 * 180.02562 * 5 3 2 32 32 H 1.08997 * 109.47179 * 300.00176 * 5 3 2 33 33 H 1.08993 * 110.59808 * 298.55222 * 7 6 3 34 34 H 1.08999 * 110.59745 * 61.49605 * 7 6 3 35 35 H 1.09001 * 109.47034 * 30.17505 * 11 10 8 36 36 H 1.09001 * 109.46722 * 150.17279 * 11 10 8 37 37 H 1.09008 * 109.47033 * 59.99911 * 13 12 11 38 38 H 1.08995 * 109.47235 * 179.97438 * 13 12 11 39 39 H 1.08996 * 109.47513 * 300.00258 * 13 12 11 40 40 H 1.08994 * 109.46858 * 60.00353 * 14 12 11 41 41 H 1.08996 * 109.46804 * 180.02562 * 14 12 11 42 42 H 1.08998 * 109.47179 * 300.00323 * 14 12 11 43 43 H 0.96991 * 120.00221 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4444 -0.1257 6 7 1.6524 2.0975 1.2518 7 6 0.8095 3.2974 1.3932 8 6 0.7482 3.5152 2.8920 9 8 0.1589 4.3962 3.4804 10 7 1.4799 2.5220 3.4347 11 6 1.6864 2.3439 4.8741 12 6 2.9328 3.1167 5.3101 13 6 4.1517 2.5887 4.5509 14 6 2.7447 4.6035 5.0020 15 6 3.1455 2.9330 6.7906 16 1 2.4599 2.3260 7.3634 17 6 4.2152 3.5397 7.4139 18 7 5.0498 4.2792 6.7165 19 14 4.4785 3.3125 9.2493 20 1 4.6604 1.8693 9.5483 21 1 5.6883 4.0625 9.6724 22 1 3.2957 3.8254 9.9863 23 6 1.9973 1.7208 2.4964 24 8 2.6965 0.7573 2.7413 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8532 0.9571 -1.0570 31 1 3.9282 2.4721 -0.1252 32 1 3.9995 0.9053 0.7161 33 1 1.2730 4.1518 0.9002 34 1 -0.1871 3.1155 0.9909 35 1 0.8180 2.7201 5.4150 36 1 1.8203 1.2846 5.0936 37 1 3.9981 2.7212 3.4798 38 1 5.0396 3.1395 4.8611 39 1 4.2857 1.5295 4.7703 40 1 1.8764 4.9796 5.5429 41 1 3.6329 5.1539 5.3122 42 1 2.5911 4.7360 3.9310 43 1 5.8021 4.7063 7.1551 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420046384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:25 Heat of formation + Delta-G solvation = -66.925553 kcal Electronic energy + Delta-G solvation = -24245.434320 eV Core-core repulsion = 20904.865001 eV Total energy + Delta-G solvation = -3340.569319 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.32047 -39.70084 -38.41815 -37.21181 -36.59493 -34.24860 -32.65273 -30.97582 -28.43987 -27.74588 -27.67099 -27.05369 -24.80006 -23.49412 -22.87681 -20.96150 -20.05754 -18.47809 -18.01580 -17.78130 -17.35198 -16.70962 -16.64183 -16.05124 -15.51768 -15.22242 -15.08416 -14.75361 -14.52194 -14.45615 -14.20790 -14.18685 -13.84007 -13.19094 -13.13997 -13.07170 -12.77993 -12.69312 -12.58524 -12.32113 -12.27894 -12.14627 -11.99431 -11.91866 -11.83716 -11.46945 -11.38509 -10.95496 -10.78134 -10.41117 -10.38108 -9.81231 -8.03030 -6.21202 0.77388 1.25270 1.43841 1.44469 1.51743 2.11980 2.20558 2.45248 3.17973 3.19896 3.69851 4.04493 4.09618 4.23227 4.34816 4.36770 4.42389 4.48596 4.57496 4.61100 4.63609 4.68806 4.77555 4.90298 4.92996 4.97738 5.05769 5.10324 5.12914 5.20523 5.33246 5.37839 5.43528 5.52302 5.58307 5.62143 5.70277 6.03145 6.11050 6.35680 6.36645 6.54177 6.83322 7.24318 7.46307 8.96287 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026499 B = 0.005163 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.404517 B = 5422.405632 C = 5760.304936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.179 3.821 4 H 0.140 0.860 5 C -0.169 4.169 6 N -0.616 5.616 7 C 0.075 3.925 8 C 0.507 3.493 9 O -0.506 6.506 10 N -0.576 5.576 11 C 0.141 3.859 12 C 0.048 3.952 13 C -0.095 4.095 14 C -0.102 4.102 15 C -0.528 4.528 16 H 0.054 0.946 17 C 0.023 3.977 18 N -0.905 5.905 19 Si 0.953 3.047 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.694 3.306 24 O -0.572 6.572 25 H 0.053 0.947 26 H 0.034 0.966 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.042 0.958 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.147 0.853 34 H 0.158 0.842 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.009 0.991 38 H 0.054 0.946 39 H 0.013 0.987 40 H 0.019 0.981 41 H 0.057 0.943 42 H 0.011 0.989 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.632 -4.101 -18.377 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.179 4.179 3 C 0.079 3.921 4 H 0.158 0.842 5 C -0.227 4.227 6 N -0.356 5.356 7 C -0.050 4.050 8 C 0.297 3.703 9 O -0.378 6.378 10 N -0.320 5.320 11 C 0.019 3.981 12 C 0.047 3.953 13 C -0.153 4.153 14 C -0.160 4.160 15 C -0.567 4.567 16 H 0.072 0.928 17 C -0.176 4.176 18 N -0.543 5.543 19 Si 0.779 3.221 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.197 1.197 23 C 0.397 3.603 24 O -0.448 6.448 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.099 0.901 28 H 0.117 0.883 29 H 0.060 0.940 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.165 0.835 34 H 0.176 0.824 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.028 0.972 38 H 0.073 0.927 39 H 0.033 0.967 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.030 0.970 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.370 -4.110 -17.967 20.243 hybrid contribution 0.566 -0.076 1.652 1.748 sum -7.804 -4.186 -16.315 18.563 Atomic orbital electron populations 1.21700 0.94622 1.01882 1.01926 1.21972 0.97125 0.95838 1.02963 1.21291 0.95058 0.93467 0.82284 0.84213 1.22208 0.95263 1.02348 1.02865 1.47997 1.52918 1.29923 1.04713 1.22722 1.00370 0.90653 0.91250 1.21613 0.76715 0.79874 0.92089 1.90771 1.43301 1.33026 1.70738 1.46635 1.47512 1.28414 1.09409 1.21714 0.99859 1.01025 0.75468 1.18470 0.90328 0.91951 0.94547 1.21452 1.01082 0.97825 0.94961 1.21523 1.00036 0.98840 0.95623 1.21222 1.11215 1.30990 0.93248 0.92766 1.25588 0.95470 0.94630 1.01941 1.69954 1.15205 1.32565 1.36620 0.85689 0.77475 0.78150 0.80751 1.19962 1.20966 1.19740 1.16071 0.79964 0.82330 0.81980 1.90905 1.41090 1.29538 1.83259 0.92782 0.94654 0.90093 0.88297 0.93960 0.88462 0.92483 0.94688 0.83533 0.82425 0.90485 0.91053 0.97220 0.92724 0.96743 0.96202 0.92461 0.96982 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.80 71.98 0.71 -1.42 16 2 C -0.14 -2.47 5.39 30.60 0.16 -2.31 16 3 C 0.18 3.03 2.97 44.99 0.13 3.16 16 4 H 0.14 1.15 8.12 -2.39 -0.02 1.13 16 5 C -0.17 -3.36 9.23 71.98 0.66 -2.70 16 6 N -0.62 -14.63 2.34 -817.73 -1.91 -16.54 16 7 C 0.07 1.43 7.65 85.76 0.66 2.09 16 8 C 0.51 16.45 6.66 87.94 0.59 17.04 16 9 O -0.51 -19.39 16.85 -2.88 -0.05 -19.44 16 10 N -0.58 -21.69 2.13 -773.12 -1.65 -23.34 16 11 C 0.14 6.26 4.67 86.38 0.40 6.67 16 12 C 0.05 2.46 0.57 -52.93 -0.03 2.43 16 13 C -0.10 -5.00 7.12 71.98 0.51 -4.49 16 14 C -0.10 -5.23 7.25 71.98 0.52 -4.71 16 15 C -0.53 -29.33 8.01 25.60 0.21 -29.12 16 16 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 17 C 0.02 1.28 5.15 84.65 0.44 1.72 16 18 N -0.90 -51.75 9.36 21.45 0.20 -51.55 16 19 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 23 C 0.69 24.44 6.20 179.44 1.11 25.56 16 24 O -0.57 -24.21 13.66 -3.85 -0.05 -24.26 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.03 0.64 7.75 -2.39 -0.02 0.63 16 27 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.04 1.11 6.81 -2.39 -0.02 1.09 16 30 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.03 1.00 6.96 -2.39 -0.02 0.98 16 33 H 0.15 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.16 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 3.40 8.01 -2.39 -0.02 3.38 16 36 H 0.07 3.26 7.86 -2.39 -0.02 3.24 16 37 H 0.01 0.44 6.18 -2.38 -0.01 0.43 16 38 H 0.05 3.11 6.07 -2.39 -0.01 3.10 16 39 H 0.01 0.74 8.10 -2.39 -0.02 0.72 16 40 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 42 H 0.01 0.54 6.18 -2.39 -0.01 0.52 16 43 H 0.26 14.25 8.31 -92.72 -0.77 13.48 16 Total: -1.00 -71.52 335.15 5.62 -65.89 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.99 Total: 9.16 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 6.07 Total: 13.91 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -3.36 Total: -91.43 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -0.10 Total: -43.70 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -71.52 5.62 -65.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420046384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.032 kcal (2) G-P(sol) polarization free energy of solvation -71.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds