Wall clock time and date at job start Tue Mar 31 2020 06:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47510 * 2 1 4 4 H 1.09004 * 109.47084 * 305.00291 * 3 2 1 5 5 C 1.52999 * 109.46990 * 64.99639 * 3 2 1 6 6 C 1.52998 * 109.47247 * 185.00106 * 3 2 1 7 7 H 1.08996 * 110.53768 * 302.82957 * 6 3 2 8 8 N 1.47309 * 110.73006 * 65.74977 * 6 3 2 9 9 C 1.34537 * 106.61973 * 118.36503 * 8 6 3 10 10 O 1.21534 * 123.77063 * 180.20216 * 9 8 6 11 11 N 1.33798 * 112.45462 * 0.38628 * 9 8 6 12 12 C 1.46498 * 124.17515 * 179.86406 * 11 9 8 13 13 C 1.53006 * 109.46958 * 269.69374 * 12 11 9 14 14 C 1.53005 * 109.46886 * 60.00206 * 13 12 11 15 15 C 1.52992 * 109.47143 * 300.00462 * 13 12 11 16 16 C 1.50695 * 109.46955 * 180.02562 * 13 12 11 17 17 H 1.08001 * 120.00374 * 357.22008 * 16 13 12 18 18 C 1.37881 * 119.99708 * 177.22601 * 16 13 12 19 19 N 1.31510 * 120.00441 * 4.85393 * 18 16 13 20 20 Si 1.86805 * 119.99840 * 184.86012 * 18 16 13 21 21 H 1.48503 * 109.47050 * 265.05947 * 20 18 16 22 22 H 1.48494 * 109.47094 * 145.06173 * 20 18 16 23 23 H 1.48501 * 109.47247 * 25.05769 * 20 18 16 24 24 C 1.34764 * 111.64414 * 359.59080 * 11 9 8 25 25 O 1.21238 * 127.15706 * 180.19621 * 24 11 9 26 26 H 1.08999 * 109.47288 * 300.00011 * 1 2 3 27 27 H 1.09002 * 109.46933 * 59.99932 * 1 2 3 28 28 H 1.08996 * 109.47464 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47288 * 239.99989 * 2 1 3 30 30 H 1.08998 * 109.47597 * 120.00325 * 2 1 3 31 31 H 1.09005 * 109.47167 * 180.02562 * 5 3 2 32 32 H 1.08991 * 109.47348 * 300.00148 * 5 3 2 33 33 H 1.08998 * 109.47002 * 60.00671 * 5 3 2 34 34 H 0.97000 * 126.69573 * 298.55018 * 8 6 3 35 35 H 1.08993 * 109.46886 * 149.69593 * 12 11 9 36 36 H 1.08998 * 109.47011 * 29.69475 * 12 11 9 37 37 H 1.09000 * 109.46810 * 174.00664 * 14 13 12 38 38 H 1.08999 * 109.47030 * 294.00812 * 14 13 12 39 39 H 1.08998 * 109.47195 * 54.00949 * 14 13 12 40 40 H 1.09006 * 109.47229 * 299.99761 * 15 13 12 41 41 H 1.08999 * 109.47614 * 59.99966 * 15 13 12 42 42 H 1.09001 * 109.47431 * 180.02562 * 15 13 12 43 43 H 0.96995 * 120.00537 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5648 1.4442 -0.1257 7 1 4.0157 0.8666 0.6812 8 7 3.9806 0.9157 -1.4364 9 6 4.6394 1.9090 -2.0605 10 8 5.1170 1.8080 -3.1734 11 7 4.7134 3.0191 -1.3172 12 6 5.3759 4.2535 -1.7455 13 6 6.8437 4.2204 -1.3150 14 6 7.5374 3.0189 -1.9602 15 6 6.9259 4.0993 0.2080 16 6 7.5250 5.4904 -1.7550 17 1 6.9790 6.2258 -2.3273 18 6 8.8455 5.7136 -1.4270 19 7 9.5379 4.7787 -0.8138 20 14 9.6511 7.3442 -1.8535 21 1 10.3618 7.2206 -3.1515 22 1 10.6215 7.7098 -0.7907 23 1 8.6103 8.3983 -1.9575 24 6 4.0981 2.8632 -0.1284 25 8 3.9935 3.6865 0.7555 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.9983 3.1544 1.3071 32 1 0.5490 2.1253 1.3968 33 1 2.0699 1.5875 2.1491 34 1 3.8100 0.0260 -1.7832 35 1 4.8816 5.1093 -1.2859 36 1 5.3173 4.3396 -2.8305 37 1 8.6045 3.0545 -1.7406 38 1 7.1146 2.0973 -1.5603 39 1 7.3874 3.0492 -3.0394 40 1 6.4316 4.9552 0.6677 41 1 6.4330 3.1808 0.5266 42 1 7.9715 4.0761 0.5148 43 1 10.4669 4.9355 -0.5834 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420081538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:46 Heat of formation + Delta-G solvation = -60.113908 kcal Electronic energy + Delta-G solvation = -23943.399748 eV Core-core repulsion = 20603.125804 eV Total energy + Delta-G solvation = -3340.273944 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.15301 -38.24794 -37.34495 -35.89926 -35.18570 -33.21207 -30.90869 -30.25048 -26.93846 -26.18928 -25.61236 -25.10125 -24.12284 -22.26725 -20.57516 -20.37188 -18.57956 -17.52923 -16.91545 -16.26402 -15.86764 -15.24766 -15.10347 -14.82103 -14.66131 -14.18520 -14.06178 -13.64871 -13.25019 -12.83200 -12.71516 -12.63049 -12.22593 -12.01160 -11.89295 -11.53916 -11.24395 -11.11136 -11.05851 -10.91313 -10.72659 -10.64421 -10.40736 -10.27138 -10.15493 -10.01516 -9.57450 -9.42311 -9.26605 -8.77381 -8.61815 -8.28510 -5.94997 -4.06064 2.01597 2.69173 3.31925 3.38512 3.39779 3.43497 3.50694 4.19309 4.42144 4.44610 4.57669 4.80330 4.97964 5.18167 5.29646 5.30797 5.37797 5.44247 5.57888 5.72148 5.76139 5.79828 5.90315 6.07429 6.12337 6.19549 6.28459 6.32452 6.49004 6.87421 6.98039 7.00382 7.11905 7.18930 7.50954 7.57186 7.69751 7.75629 7.82641 8.13924 8.20315 8.45575 8.56452 8.93473 9.58729 11.05848 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033568 B = 0.004604 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.922903 B = 6080.423070 C = 6467.712020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.087 4.087 4 H 0.079 0.921 5 C -0.157 4.157 6 C 0.094 3.906 7 H 0.120 0.880 8 N -0.733 5.733 9 C 0.701 3.299 10 O -0.538 6.538 11 N -0.562 5.562 12 C 0.128 3.872 13 C 0.054 3.946 14 C -0.122 4.122 15 C -0.123 4.123 16 C -0.506 4.506 17 H 0.057 0.943 18 C 0.067 3.933 19 N -0.883 5.883 20 Si 0.893 3.107 21 H -0.282 1.282 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.525 3.475 25 O -0.464 6.464 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.433 0.567 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.082 0.918 38 H -0.001 1.001 39 H 0.030 0.970 40 H 0.029 0.971 41 H -0.001 1.001 42 H 0.082 0.918 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.725 -9.864 3.299 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.107 4.107 4 H 0.098 0.902 5 C -0.215 4.215 6 C -0.015 4.015 7 H 0.137 0.863 8 N -0.398 5.398 9 C 0.402 3.598 10 O -0.411 6.411 11 N -0.306 5.306 12 C 0.008 3.992 13 C 0.053 3.947 14 C -0.179 4.179 15 C -0.180 4.180 16 C -0.545 4.545 17 H 0.075 0.925 18 C -0.134 4.134 19 N -0.521 5.521 20 Si 0.721 3.279 21 H -0.208 1.208 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.311 3.689 25 O -0.334 6.334 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.276 0.724 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.018 0.982 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.018 0.982 42 H 0.100 0.900 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.263 -9.355 3.220 18.189 hybrid contribution 0.490 0.336 -0.336 0.683 sum -14.772 -9.019 2.884 17.547 Atomic orbital electron populations 1.21799 0.95359 1.01661 1.02170 1.21556 0.96426 0.95261 1.02242 1.21334 0.91196 0.97790 1.00385 0.90235 1.21987 1.01454 1.02430 0.95616 1.22156 0.97194 0.93973 0.88222 0.86273 1.45553 1.60647 1.15617 1.18015 1.15913 0.78884 0.80679 0.84292 1.90990 1.50746 1.81670 1.17661 1.46536 1.51247 1.15546 1.17266 1.22244 0.95948 0.80660 1.00317 1.18478 0.87469 0.95671 0.93102 1.21766 1.03692 0.94405 0.98064 1.21760 1.02888 0.96099 0.97277 1.20930 0.96198 1.02614 1.34737 0.92455 1.24875 0.97035 0.96576 0.94946 1.69834 1.08941 1.32287 1.41053 0.86567 0.79246 0.84148 0.77953 1.20816 1.21229 1.19849 1.20577 0.77297 0.89090 0.81955 1.90750 1.55895 1.48593 1.38163 0.92217 0.92700 0.92693 0.91893 0.91402 0.90461 0.91977 0.92167 0.72376 0.90153 0.90009 0.89936 0.98165 0.95076 0.95137 0.98185 0.89970 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.67 37.15 0.36 -0.64 16 2 C -0.12 -0.83 5.36 -26.73 -0.14 -0.98 16 3 C -0.09 -0.83 2.19 -90.62 -0.20 -1.02 16 4 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 5 C -0.16 -1.50 8.61 37.16 0.32 -1.18 16 6 C 0.09 1.12 3.21 -68.20 -0.22 0.91 16 7 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 8 N -0.73 -9.27 5.95 -59.19 -0.35 -9.62 16 9 C 0.70 12.53 7.16 -88.00 -0.63 11.90 16 10 O -0.54 -11.42 16.22 5.34 0.09 -11.33 16 11 N -0.56 -10.53 2.14 -120.72 -0.26 -10.79 16 12 C 0.13 2.75 4.67 -4.04 -0.02 2.73 16 13 C 0.05 1.34 0.57 -155.66 -0.09 1.25 16 14 C -0.12 -3.09 7.07 37.16 0.26 -2.83 16 15 C -0.12 -3.04 7.23 37.15 0.27 -2.77 16 16 C -0.51 -13.66 8.01 -34.44 -0.28 -13.93 16 17 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 18 C 0.07 1.83 5.12 -17.82 -0.09 1.73 16 19 N -0.88 -24.64 9.35 55.43 0.52 -24.12 16 20 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.52 8.77 5.72 -10.55 -0.06 8.71 16 25 O -0.46 -8.68 14.74 5.59 0.08 -8.60 16 26 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.42 7.23 -51.93 -0.38 0.04 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.94 5.93 -51.93 -0.31 0.63 16 32 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.43 4.19 8.29 -40.82 -0.34 3.85 16 35 H 0.08 1.69 8.00 -51.93 -0.42 1.28 16 36 H 0.08 1.77 7.85 -51.93 -0.41 1.37 16 37 H 0.08 2.29 5.99 -51.93 -0.31 1.98 16 38 H 0.00 -0.02 6.72 -51.93 -0.35 -0.37 16 39 H 0.03 0.79 7.81 -51.93 -0.41 0.39 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.00 -0.02 6.19 -51.93 -0.32 -0.34 16 42 H 0.08 2.24 6.04 -51.93 -0.31 1.92 16 43 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 330.08 15.07 4.97 4.97 Total: -1.00 -30.74 330.08 -7.21 -37.95 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.73 Total: 1.52 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -0.51 Total: 3.87 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.09 Total: -44.53 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: 0.17 Total: -19.93 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.74 -7.21 -37.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420081538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.159 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds