Wall clock time and date at job start Tue Mar 31 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46684 * 2 1 4 4 H 1.08999 * 109.47217 * 55.00441 * 3 2 1 5 5 C 1.52999 * 109.47339 * 294.99680 * 3 2 1 6 6 C 1.53004 * 109.46921 * 174.99689 * 3 2 1 7 7 H 1.09000 * 110.53600 * 61.37377 * 6 3 2 8 8 N 1.47319 * 110.59929 * 298.54802 * 6 3 2 9 9 C 1.34524 * 106.61652 * 241.47196 * 8 6 3 10 10 O 1.21544 * 123.77220 * 179.97438 * 9 8 6 11 11 N 1.33789 * 112.46067 * 359.97438 * 9 8 6 12 12 C 1.46506 * 124.17931 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47050 * 90.02618 * 12 11 9 14 14 C 1.52999 * 109.47119 * 59.99698 * 13 12 11 15 15 C 1.53003 * 109.46968 * 300.00218 * 13 12 11 16 16 C 1.50697 * 109.47051 * 179.97438 * 13 12 11 17 17 H 1.08006 * 119.99992 * 357.70112 * 16 13 12 18 18 C 1.37875 * 120.00093 * 177.70689 * 16 13 12 19 19 N 1.31517 * 119.99809 * 6.26590 * 18 16 13 20 20 Si 1.86795 * 119.99992 * 186.27286 * 18 16 13 21 21 H 1.48500 * 109.47128 * 85.03576 * 20 18 16 22 22 H 1.48498 * 109.47402 * 325.03024 * 20 18 16 23 23 H 1.48505 * 109.47275 * 205.03162 * 20 18 16 24 24 C 1.34767 * 111.64603 * 0.22867 * 11 9 8 25 25 O 1.21233 * 127.16147 * 179.73344 * 24 11 9 26 26 H 1.09002 * 109.47006 * 60.00654 * 1 2 3 27 27 H 1.09000 * 109.46712 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47203 * 300.00125 * 1 2 3 29 29 H 1.08996 * 109.47624 * 239.99744 * 2 1 3 30 30 H 1.09002 * 109.47006 * 119.99346 * 2 1 3 31 31 H 1.09000 * 109.46867 * 300.00350 * 5 3 2 32 32 H 1.09002 * 109.46549 * 59.99636 * 5 3 2 33 33 H 1.08996 * 109.46766 * 180.02562 * 5 3 2 34 34 H 0.96996 * 126.68851 * 61.43585 * 8 6 3 35 35 H 1.08994 * 109.47086 * 330.02153 * 12 11 9 36 36 H 1.09004 * 109.47062 * 210.02478 * 12 11 9 37 37 H 1.08995 * 109.46989 * 179.97438 * 14 13 12 38 38 H 1.09001 * 109.47348 * 300.00414 * 14 13 12 39 39 H 1.09004 * 109.47021 * 60.00122 * 14 13 12 40 40 H 1.09004 * 109.46489 * 305.85798 * 15 13 12 41 41 H 1.08992 * 109.47480 * 65.85747 * 15 13 12 42 42 H 1.08993 * 109.46657 * 185.86284 * 15 13 12 43 43 H 0.97002 * 119.99668 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4445 0.1258 7 1 4.0190 0.9301 -0.7211 8 7 3.9810 0.8216 1.3943 9 6 4.6364 1.7678 2.0906 10 8 5.1162 1.5852 3.1924 11 7 4.7012 2.9322 1.4350 12 6 5.3553 4.1350 1.9563 13 6 6.8244 4.1425 1.5289 14 6 6.9112 4.1360 0.0014 15 6 7.5235 2.9001 2.0847 16 6 7.4970 5.3800 2.0646 17 1 6.9245 6.1085 2.6196 18 6 8.8432 5.5823 1.8461 19 7 9.5138 4.7611 1.0679 20 14 9.7147 7.0227 2.6556 21 1 10.1408 6.6373 4.0249 22 1 8.7890 8.1813 2.7329 23 1 10.9071 7.3946 1.8524 24 6 4.0856 2.8636 0.2381 25 8 3.9727 3.7518 -0.5793 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.0699 1.5876 -2.1491 32 1 0.5489 2.1251 -1.3969 33 1 1.9989 3.1541 -1.3075 34 1 3.8144 -0.0923 1.6732 35 1 5.2933 4.1396 3.0444 36 1 4.8572 5.0200 1.5603 37 1 7.9578 4.1418 -0.3030 38 1 6.4245 3.2411 -0.3864 39 1 6.4131 5.0210 -0.3946 40 1 7.3723 2.8502 3.1630 41 1 7.1056 2.0085 1.6175 42 1 8.5904 2.9570 1.8696 43 1 10.4610 4.9033 0.9145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420081842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:50 Heat of formation + Delta-G solvation = -60.161806 kcal Electronic energy + Delta-G solvation = -23939.596736 eV Core-core repulsion = 20599.320714 eV Total energy + Delta-G solvation = -3340.276021 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.15365 -38.23548 -37.36288 -35.90151 -35.17465 -33.20506 -30.90881 -30.26942 -26.93888 -26.18889 -25.61459 -25.09954 -24.11892 -22.28454 -20.54036 -20.39716 -18.57529 -17.53123 -16.91427 -16.27479 -15.85759 -15.26813 -15.08251 -14.82177 -14.65974 -14.19509 -14.05396 -13.63335 -13.27453 -12.84058 -12.69300 -12.63383 -12.22865 -12.03720 -11.89852 -11.52275 -11.24070 -11.11768 -11.06947 -10.90834 -10.72802 -10.64418 -10.41632 -10.25795 -10.15572 -10.02838 -9.58231 -9.42149 -9.26930 -8.76689 -8.62095 -8.28540 -5.95231 -4.05957 2.01758 2.69135 3.33051 3.38667 3.39396 3.42911 3.50787 4.19363 4.41771 4.44744 4.57724 4.79859 4.97953 5.17831 5.29465 5.30618 5.37293 5.44198 5.57462 5.71947 5.75901 5.79576 5.89708 6.07071 6.12275 6.19145 6.27268 6.32476 6.49021 6.87809 6.97724 7.00368 7.12314 7.18357 7.50751 7.56968 7.69344 7.76035 7.82490 8.13591 8.20407 8.45180 8.56397 8.93454 9.58740 11.05727 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034291 B = 0.004580 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.334613 B = 6112.534409 C = 6478.504732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.087 4.087 4 H 0.079 0.921 5 C -0.157 4.157 6 C 0.094 3.906 7 H 0.120 0.880 8 N -0.733 5.733 9 C 0.701 3.299 10 O -0.538 6.538 11 N -0.562 5.562 12 C 0.128 3.872 13 C 0.054 3.946 14 C -0.123 4.123 15 C -0.121 4.121 16 C -0.507 4.507 17 H 0.057 0.943 18 C 0.068 3.932 19 N -0.882 5.882 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.275 1.275 23 H -0.288 1.288 24 C 0.525 3.475 25 O -0.464 6.464 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.433 0.567 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.084 0.916 38 H -0.003 1.003 39 H 0.029 0.971 40 H 0.031 0.969 41 H 0.001 0.999 42 H 0.079 0.921 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.623 -9.815 -3.903 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.107 4.107 4 H 0.097 0.903 5 C -0.214 4.214 6 C -0.015 4.015 7 H 0.138 0.862 8 N -0.398 5.398 9 C 0.402 3.598 10 O -0.411 6.411 11 N -0.306 5.306 12 C 0.008 3.992 13 C 0.053 3.947 14 C -0.180 4.180 15 C -0.179 4.179 16 C -0.546 4.546 17 H 0.075 0.925 18 C -0.134 4.134 19 N -0.521 5.521 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.200 1.200 23 H -0.214 1.214 24 C 0.311 3.689 25 O -0.334 6.334 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.276 0.724 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.016 0.984 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.020 0.980 42 H 0.097 0.903 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.164 -9.313 -3.782 18.193 hybrid contribution 0.525 0.232 0.513 0.770 sum -14.639 -9.080 -3.269 17.534 Atomic orbital electron populations 1.21798 0.95351 1.01663 1.02166 1.21558 0.96436 0.95292 1.02237 1.21333 0.91230 0.97766 1.00365 0.90277 1.21971 1.01511 1.02359 0.95585 1.22169 0.97231 0.92739 0.89402 0.86239 1.45566 1.60792 1.14283 1.19204 1.15911 0.78880 0.80802 0.84181 1.90993 1.50588 1.81176 1.18334 1.46536 1.51418 1.13930 1.18723 1.22244 0.96091 0.81717 0.99110 1.18477 0.87455 0.95458 0.93324 1.21803 1.03073 0.96110 0.97036 1.21726 1.03488 0.94567 0.98107 1.20914 0.93991 1.04867 1.34783 0.92466 1.24872 0.97411 0.96363 0.94759 1.69844 1.08666 1.37442 1.36111 0.86594 0.79149 0.82673 0.79467 1.20610 1.19975 1.21358 1.20572 0.77230 0.89560 0.81539 1.90751 1.55674 1.43903 1.43085 0.92223 0.92692 0.92696 0.91408 0.91861 0.92205 0.91933 0.90503 0.72362 0.89989 0.90170 0.89716 0.98367 0.95200 0.94992 0.97989 0.90257 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.67 37.16 0.36 -0.64 16 2 C -0.12 -0.84 5.34 -26.73 -0.14 -0.98 16 3 C -0.09 -0.82 2.16 -90.62 -0.20 -1.02 16 4 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 5 C -0.16 -1.47 8.71 37.16 0.32 -1.15 16 6 C 0.09 1.12 3.21 -68.20 -0.22 0.91 16 7 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 8 N -0.73 -9.27 5.86 -59.18 -0.35 -9.61 16 9 C 0.70 12.52 7.15 -88.02 -0.63 11.89 16 10 O -0.54 -11.41 16.19 5.33 0.09 -11.32 16 11 N -0.56 -10.54 2.14 -120.72 -0.26 -10.80 16 12 C 0.13 2.75 4.67 -4.04 -0.02 2.73 16 13 C 0.05 1.34 0.57 -155.66 -0.09 1.25 16 14 C -0.12 -3.05 7.30 37.16 0.27 -2.78 16 15 C -0.12 -3.07 7.03 37.16 0.26 -2.81 16 16 C -0.51 -13.68 8.01 -34.44 -0.28 -13.96 16 17 H 0.06 1.51 7.75 -52.48 -0.41 1.11 16 18 C 0.07 1.84 5.10 -17.82 -0.09 1.75 16 19 N -0.88 -24.64 9.38 55.43 0.52 -24.12 16 20 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 24 C 0.52 8.79 5.77 -10.55 -0.06 8.73 16 25 O -0.46 -8.72 14.94 5.60 0.08 -8.63 16 26 H 0.06 0.38 6.57 -51.93 -0.34 0.03 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.43 7.00 -51.93 -0.36 0.06 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 33 H 0.08 0.92 6.08 -51.93 -0.32 0.60 16 34 H 0.43 4.19 8.13 -40.82 -0.33 3.86 16 35 H 0.08 1.78 7.86 -51.93 -0.41 1.37 16 36 H 0.08 1.69 8.00 -51.93 -0.42 1.28 16 37 H 0.08 2.31 6.02 -51.93 -0.31 2.00 16 38 H 0.00 -0.06 6.21 -51.93 -0.32 -0.39 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.03 0.81 7.81 -51.93 -0.41 0.41 16 41 H 0.00 0.03 6.69 -51.93 -0.35 -0.32 16 42 H 0.08 2.19 5.99 -51.93 -0.31 1.88 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 330.03 15.07 4.97 4.97 Total: -1.00 -30.76 330.03 -7.19 -37.94 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.72 Total: 1.48 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -0.51 Total: 3.91 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.08 Total: -44.52 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.17 Total: -19.96 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.76 -7.19 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420081842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.219 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds