Wall clock time and date at job start Tue Mar 31 2020 06:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46684 * 2 1 4 4 H 1.08999 * 109.47217 * 55.00441 * 3 2 1 5 5 C 1.52999 * 109.47339 * 294.99680 * 3 2 1 6 6 C 1.53004 * 109.46921 * 174.99689 * 3 2 1 7 7 H 1.09000 * 110.53600 * 61.37377 * 6 3 2 8 8 N 1.47319 * 110.59929 * 298.54802 * 6 3 2 9 9 C 1.34524 * 106.61652 * 241.47196 * 8 6 3 10 10 O 1.21544 * 123.77220 * 179.97438 * 9 8 6 11 11 N 1.33789 * 112.46067 * 359.97438 * 9 8 6 12 12 C 1.46506 * 124.17931 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47050 * 90.02618 * 12 11 9 14 14 C 1.52999 * 109.47119 * 59.99698 * 13 12 11 15 15 C 1.53003 * 109.46968 * 300.00218 * 13 12 11 16 16 C 1.50697 * 109.47051 * 179.97438 * 13 12 11 17 17 H 1.08006 * 119.99992 * 357.70112 * 16 13 12 18 18 C 1.37875 * 120.00093 * 177.70689 * 16 13 12 19 19 N 1.31517 * 119.99809 * 6.26590 * 18 16 13 20 20 Si 1.86795 * 119.99992 * 186.27286 * 18 16 13 21 21 H 1.48500 * 109.47128 * 85.03576 * 20 18 16 22 22 H 1.48498 * 109.47402 * 325.03024 * 20 18 16 23 23 H 1.48505 * 109.47275 * 205.03162 * 20 18 16 24 24 C 1.34767 * 111.64603 * 0.22867 * 11 9 8 25 25 O 1.21233 * 127.16147 * 179.73344 * 24 11 9 26 26 H 1.09002 * 109.47006 * 60.00654 * 1 2 3 27 27 H 1.09000 * 109.46712 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47203 * 300.00125 * 1 2 3 29 29 H 1.08996 * 109.47624 * 239.99744 * 2 1 3 30 30 H 1.09002 * 109.47006 * 119.99346 * 2 1 3 31 31 H 1.09000 * 109.46867 * 300.00350 * 5 3 2 32 32 H 1.09002 * 109.46549 * 59.99636 * 5 3 2 33 33 H 1.08996 * 109.46766 * 180.02562 * 5 3 2 34 34 H 0.96996 * 126.68851 * 61.43585 * 8 6 3 35 35 H 1.08994 * 109.47086 * 330.02153 * 12 11 9 36 36 H 1.09004 * 109.47062 * 210.02478 * 12 11 9 37 37 H 1.08995 * 109.46989 * 179.97438 * 14 13 12 38 38 H 1.09001 * 109.47348 * 300.00414 * 14 13 12 39 39 H 1.09004 * 109.47021 * 60.00122 * 14 13 12 40 40 H 1.09004 * 109.46489 * 305.85798 * 15 13 12 41 41 H 1.08992 * 109.47480 * 65.85747 * 15 13 12 42 42 H 1.08993 * 109.46657 * 185.86284 * 15 13 12 43 43 H 0.97002 * 119.99668 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4445 0.1258 7 1 4.0190 0.9301 -0.7211 8 7 3.9810 0.8216 1.3943 9 6 4.6364 1.7678 2.0906 10 8 5.1162 1.5852 3.1924 11 7 4.7012 2.9322 1.4350 12 6 5.3553 4.1350 1.9563 13 6 6.8244 4.1425 1.5289 14 6 6.9112 4.1360 0.0014 15 6 7.5235 2.9001 2.0847 16 6 7.4970 5.3800 2.0646 17 1 6.9245 6.1085 2.6196 18 6 8.8432 5.5823 1.8461 19 7 9.5138 4.7611 1.0679 20 14 9.7147 7.0227 2.6556 21 1 10.1408 6.6373 4.0249 22 1 8.7890 8.1813 2.7329 23 1 10.9071 7.3946 1.8524 24 6 4.0856 2.8636 0.2381 25 8 3.9727 3.7518 -0.5793 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.0699 1.5876 -2.1491 32 1 0.5489 2.1251 -1.3969 33 1 1.9989 3.1541 -1.3075 34 1 3.8144 -0.0923 1.6732 35 1 5.2933 4.1396 3.0444 36 1 4.8572 5.0200 1.5603 37 1 7.9578 4.1418 -0.3030 38 1 6.4245 3.2411 -0.3864 39 1 6.4131 5.0210 -0.3946 40 1 7.3723 2.8502 3.1630 41 1 7.1056 2.0085 1.6175 42 1 8.5904 2.9570 1.8696 43 1 10.4610 4.9033 0.9145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420081842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:49 Heat of formation + Delta-G solvation = -79.543755 kcal Electronic energy + Delta-G solvation = -23940.437200 eV Core-core repulsion = 20599.320714 eV Total energy + Delta-G solvation = -3341.116486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.49472 -39.62728 -38.63238 -37.50768 -36.46801 -34.68503 -32.81593 -30.98777 -28.24701 -27.71050 -27.55722 -27.09600 -25.02571 -23.58019 -21.99738 -21.18592 -20.29939 -18.87883 -18.37196 -17.80442 -17.50134 -16.65266 -16.40416 -16.24795 -16.06930 -15.40240 -15.16034 -15.01466 -14.51876 -14.46890 -14.13930 -14.01253 -13.41257 -13.26869 -13.09069 -12.79625 -12.69871 -12.60032 -12.54278 -12.33674 -12.28290 -12.15435 -11.95297 -11.88674 -11.63868 -11.46388 -11.43795 -10.91612 -10.76038 -10.51124 -10.37288 -10.26765 -8.03001 -6.20278 0.69064 1.34059 1.44082 1.45943 1.53966 2.08607 2.26332 2.45947 3.01853 3.20086 3.55656 3.79303 4.05035 4.13100 4.27524 4.41656 4.51439 4.56528 4.60262 4.64294 4.66811 4.72365 4.86348 4.92519 4.97163 5.08595 5.11011 5.13764 5.16938 5.25079 5.26558 5.44622 5.48099 5.57536 5.57877 5.63602 5.89042 6.02499 6.12186 6.24186 6.37410 6.51747 6.84346 7.21658 7.47065 8.96453 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034291 B = 0.004580 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.334613 B = 6112.534409 C = 6478.504732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.080 4.080 4 H 0.069 0.931 5 C -0.154 4.154 6 C 0.106 3.894 7 H 0.149 0.851 8 N -0.705 5.705 9 C 0.696 3.304 10 O -0.577 6.577 11 N -0.573 5.573 12 C 0.138 3.862 13 C 0.047 3.953 14 C -0.104 4.104 15 C -0.101 4.101 16 C -0.528 4.528 17 H 0.056 0.944 18 C 0.024 3.976 19 N -0.904 5.904 20 Si 0.952 3.048 21 H -0.278 1.278 22 H -0.269 1.269 23 H -0.285 1.285 24 C 0.515 3.485 25 O -0.488 6.488 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.450 0.550 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.010 0.990 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.009 0.991 42 H 0.054 0.946 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.036 -11.092 -4.515 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.099 4.099 4 H 0.088 0.912 5 C -0.212 4.212 6 C -0.002 4.002 7 H 0.166 0.834 8 N -0.371 5.371 9 C 0.397 3.603 10 O -0.453 6.453 11 N -0.317 5.317 12 C 0.017 3.983 13 C 0.045 3.955 14 C -0.161 4.161 15 C -0.159 4.159 16 C -0.566 4.566 17 H 0.074 0.926 18 C -0.176 4.176 19 N -0.542 5.542 20 Si 0.778 3.222 21 H -0.204 1.204 22 H -0.194 1.194 23 H -0.211 1.211 24 C 0.303 3.697 25 O -0.359 6.359 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.298 0.702 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.029 0.971 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.028 0.972 42 H 0.073 0.927 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.620 -10.635 -4.423 20.221 hybrid contribution 0.915 0.620 0.656 1.285 sum -15.704 -10.015 -3.767 19.003 Atomic orbital electron populations 1.21801 0.94794 1.02344 1.02059 1.21558 0.96852 0.93273 1.03377 1.21336 0.88817 0.99636 1.00144 0.91238 1.21948 1.02653 1.00714 0.95877 1.22345 0.99073 0.89281 0.89533 0.83393 1.45413 1.58935 1.14152 1.18600 1.16054 0.79136 0.81205 0.83916 1.90968 1.52513 1.81801 1.20061 1.46535 1.51751 1.13609 1.19813 1.21800 0.94363 0.83303 0.98790 1.18494 0.89418 0.94482 0.93059 1.21564 1.01234 0.96167 0.97170 1.21485 1.01864 0.95252 0.97267 1.21242 0.94593 1.05734 1.35030 0.92597 1.25576 0.98084 0.98736 0.95192 1.69968 1.08748 1.38701 1.36798 0.85660 0.78065 0.79980 0.78445 1.20401 1.19365 1.21057 1.21388 0.76533 0.91390 0.80382 1.90743 1.56318 1.45311 1.43526 0.91927 0.91642 0.93287 0.89865 0.91151 0.90993 0.90258 0.93336 0.70242 0.90618 0.90203 0.92225 0.97116 0.96152 0.96184 0.97213 0.92717 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.67 71.98 0.70 -0.80 16 2 C -0.11 -1.18 5.34 30.60 0.16 -1.02 16 3 C -0.08 -1.28 2.16 -10.79 -0.02 -1.31 16 4 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 5 C -0.15 -2.52 8.71 71.98 0.63 -1.90 16 6 C 0.11 2.26 3.21 44.37 0.14 2.40 16 7 H 0.15 2.49 8.14 -2.39 -0.02 2.47 16 8 N -0.71 -16.09 5.86 -459.58 -2.69 -18.78 16 9 C 0.70 24.20 7.15 179.44 1.28 25.48 16 10 O -0.58 -24.39 16.19 -3.85 -0.06 -24.45 16 11 N -0.57 -21.26 2.14 -773.11 -1.65 -22.91 16 12 C 0.14 6.04 4.67 86.38 0.40 6.44 16 13 C 0.05 2.34 0.57 -52.93 -0.03 2.31 16 14 C -0.10 -5.21 7.30 71.98 0.53 -4.69 16 15 C -0.10 -5.19 7.03 71.98 0.51 -4.69 16 16 C -0.53 -28.86 8.01 25.60 0.20 -28.66 16 17 H 0.06 3.00 7.75 -2.91 -0.02 2.97 16 18 C 0.02 1.29 5.10 84.65 0.43 1.73 16 19 N -0.90 -51.16 9.38 21.45 0.20 -50.96 16 20 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 C 0.51 16.71 5.77 87.94 0.51 17.21 16 25 O -0.49 -18.12 14.94 -2.88 -0.04 -18.16 16 26 H 0.06 0.58 6.57 -2.39 -0.02 0.57 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.66 7.00 -2.39 -0.02 0.64 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.03 6.56 -2.39 -0.02 1.02 16 33 H 0.05 1.10 6.08 -2.39 -0.01 1.08 16 34 H 0.45 7.27 8.13 -92.71 -0.75 6.52 16 35 H 0.08 3.36 7.86 -2.39 -0.02 3.34 16 36 H 0.08 3.43 8.00 -2.38 -0.02 3.41 16 37 H 0.06 3.31 6.02 -2.39 -0.01 3.29 16 38 H 0.01 0.47 6.21 -2.39 -0.01 0.45 16 39 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.02 1.02 7.81 -2.38 -0.02 1.00 16 41 H 0.01 0.44 6.69 -2.39 -0.02 0.42 16 42 H 0.05 3.07 5.99 -2.39 -0.01 3.06 16 43 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -67.33 330.03 3.47 -63.86 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.26 Total: 13.15 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 5.44 Total: 12.51 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -4.14 Total: -92.65 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -0.11 Total: -42.61 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -67.33 3.47 -63.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420081842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.684 kcal (2) G-P(sol) polarization free energy of solvation -67.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds