Wall clock time and date at job start Tue Mar 31 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47210 * 2 1 4 4 H 1.08999 * 109.47391 * 54.99366 * 3 2 1 5 5 C 1.53004 * 109.47049 * 294.99785 * 3 2 1 6 6 C 1.53000 * 109.47342 * 174.99989 * 3 2 1 7 7 H 1.08999 * 110.65278 * 307.91083 * 6 3 2 8 8 N 1.47316 * 110.60002 * 70.82724 * 6 3 2 9 9 C 1.34524 * 106.62027 * 118.30328 * 8 6 3 10 10 O 1.21540 * 123.76910 * 180.20668 * 9 8 6 11 11 N 1.33792 * 112.45792 * 0.38365 * 9 8 6 12 12 C 1.46502 * 124.17849 * 179.86299 * 11 9 8 13 13 C 1.53005 * 109.46923 * 269.69767 * 12 11 9 14 14 C 1.53000 * 109.46973 * 60.00386 * 13 12 11 15 15 C 1.52995 * 109.47264 * 299.99825 * 13 12 11 16 16 C 1.50703 * 109.46834 * 179.97438 * 13 12 11 17 17 H 1.08000 * 119.99826 * 359.85211 * 16 13 12 18 18 C 1.37876 * 119.99535 * 179.85359 * 16 13 12 19 19 N 1.31515 * 120.00308 * 1.53033 * 18 16 13 20 20 Si 1.86803 * 119.99569 * 181.53358 * 18 16 13 21 21 H 1.48505 * 109.46793 * 269.99838 * 20 18 16 22 22 H 1.48501 * 109.47348 * 150.00145 * 20 18 16 23 23 H 1.48500 * 109.47501 * 29.99668 * 20 18 16 24 24 C 1.34769 * 111.64264 * 359.59405 * 11 9 8 25 25 O 1.21242 * 127.15469 * 180.26341 * 24 11 9 26 26 H 1.09001 * 109.46904 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47071 * 299.99828 * 1 2 3 28 28 H 1.08999 * 109.47163 * 60.00410 * 1 2 3 29 29 H 1.09002 * 109.47627 * 239.99699 * 2 1 3 30 30 H 1.09004 * 109.47195 * 120.00057 * 2 1 3 31 31 H 1.09005 * 109.46947 * 60.00013 * 5 3 2 32 32 H 1.09001 * 109.47306 * 179.97438 * 5 3 2 33 33 H 1.08994 * 109.47321 * 300.00298 * 5 3 2 34 34 H 0.97002 * 126.68737 * 298.55896 * 8 6 3 35 35 H 1.08996 * 109.47023 * 149.70028 * 12 11 9 36 36 H 1.09000 * 109.47196 * 29.69673 * 12 11 9 37 37 H 1.09001 * 109.47321 * 172.47914 * 14 13 12 38 38 H 1.09007 * 109.47060 * 292.47104 * 14 13 12 39 39 H 1.08999 * 109.47853 * 52.47096 * 14 13 12 40 40 H 1.08994 * 109.47563 * 307.69599 * 15 13 12 41 41 H 1.09004 * 109.46743 * 67.69808 * 15 13 12 42 42 H 1.08995 * 109.47285 * 187.69188 * 15 13 12 43 43 H 0.96992 * 119.99884 * 356.81399 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 1 3.8811 0.8417 0.9772 8 7 4.1879 0.9544 -1.1160 9 6 4.9360 1.9644 -1.5956 10 8 5.5871 1.8957 -2.6195 11 7 4.8863 3.0515 -0.8173 12 6 5.6060 4.2968 -1.0959 13 6 6.9853 4.2473 -0.4354 14 6 7.7771 3.0643 -0.9961 15 6 6.8211 4.0806 1.0765 16 6 7.7259 5.5281 -0.7226 17 1 7.2603 6.2990 -1.3187 18 6 8.9977 5.7154 -0.2243 19 7 9.5762 4.7646 0.4762 20 14 9.8990 7.3201 -0.5441 21 1 10.6774 7.2080 -1.8039 22 1 10.8218 7.6030 0.5844 23 1 8.9144 8.4249 -0.6673 24 6 4.0878 2.8615 0.2516 25 8 3.8390 3.6585 1.1307 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 0.5489 2.1252 -1.3970 32 1 1.9982 3.1543 -1.3073 33 1 2.0698 1.5875 -2.1492 34 1 4.0770 0.0762 -1.5127 35 1 5.0419 5.1396 -0.6965 36 1 5.7230 4.4156 -2.1731 37 1 8.8022 3.1059 -0.6279 38 1 7.3133 2.1316 -0.6747 39 1 7.7799 3.1122 -2.0851 40 1 6.1444 4.8465 1.4552 41 1 6.4097 3.0942 1.2906 42 1 7.7922 4.1821 1.5608 43 1 9.0913 3.9501 0.6816 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420081844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:53 Heat of formation + Delta-G solvation = -53.345257 kcal Electronic energy + Delta-G solvation = -24106.305784 eV Core-core repulsion = 20766.325351 eV Total energy + Delta-G solvation = -3339.980434 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.30375 -38.25327 -37.59897 -36.28771 -35.19969 -33.43557 -30.62326 -30.07798 -27.47122 -26.43142 -25.94709 -24.90970 -24.07667 -22.40838 -20.54262 -20.22795 -18.72416 -17.60405 -17.31616 -16.54955 -16.11643 -15.58351 -15.08799 -14.84244 -14.63515 -14.13962 -13.82219 -13.71899 -13.49623 -12.97469 -12.85218 -12.64841 -12.42058 -12.33058 -11.94611 -11.50673 -11.35608 -11.27034 -11.09778 -10.96059 -10.73482 -10.61682 -10.54534 -10.39702 -10.28068 -10.01354 -9.76745 -9.66995 -9.34090 -8.87525 -8.36426 -8.23758 -6.20392 -4.05770 1.93030 2.60800 3.33075 3.41697 3.46457 3.49393 3.64732 4.11354 4.32824 4.52591 4.55531 4.68096 4.91440 5.17323 5.21592 5.31466 5.33426 5.38922 5.48991 5.65597 5.67933 5.74109 5.75066 5.99033 6.02120 6.07111 6.09455 6.11576 6.30008 6.59879 6.71425 6.87065 6.89617 6.93851 7.19340 7.23525 7.47538 7.56219 7.72950 7.79851 8.22411 8.42430 8.48184 8.87564 9.65904 11.05334 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035736 B = 0.004587 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.336732 B = 6102.418428 C = 6315.964139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.089 4.089 4 H 0.094 0.906 5 C -0.152 4.152 6 C 0.094 3.906 7 H 0.121 0.879 8 N -0.730 5.730 9 C 0.702 3.298 10 O -0.538 6.538 11 N -0.563 5.563 12 C 0.136 3.864 13 C 0.039 3.961 14 C -0.136 4.136 15 C -0.138 4.138 16 C -0.585 4.585 17 H 0.052 0.948 18 C 0.026 3.974 19 N -0.917 5.917 20 Si 1.069 2.931 21 H -0.288 1.288 22 H -0.285 1.285 23 H -0.289 1.289 24 C 0.524 3.476 25 O -0.468 6.468 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.433 0.567 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.008 0.992 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.007 0.993 42 H 0.068 0.932 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.801 -9.968 -0.635 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.109 4.109 4 H 0.112 0.888 5 C -0.209 4.209 6 C -0.015 4.015 7 H 0.138 0.862 8 N -0.395 5.395 9 C 0.403 3.597 10 O -0.411 6.411 11 N -0.308 5.308 12 C 0.016 3.984 13 C 0.038 3.962 14 C -0.194 4.194 15 C -0.196 4.196 16 C -0.624 4.624 17 H 0.070 0.930 18 C -0.178 4.178 19 N -0.557 5.557 20 Si 0.898 3.102 21 H -0.215 1.215 22 H -0.211 1.211 23 H -0.215 1.215 24 C 0.310 3.690 25 O -0.338 6.338 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.277 0.723 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.027 0.973 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.026 0.974 42 H 0.087 0.913 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.078 -8.649 -0.465 17.389 hybrid contribution -1.467 -1.274 -0.369 1.978 sum -16.545 -9.923 -0.834 19.311 Atomic orbital electron populations 1.21805 0.95313 1.01718 1.02200 1.21557 0.96469 0.95108 1.02340 1.21390 0.91159 0.97932 1.00416 0.88750 1.21901 1.01814 1.00500 0.96712 1.22173 0.95300 0.94282 0.89785 0.86167 1.45507 1.51109 1.16186 1.26720 1.15890 0.79942 0.80626 0.83244 1.90997 1.44553 1.81690 1.23874 1.46557 1.44294 1.16162 1.23758 1.22104 0.94031 0.80411 1.01804 1.18642 0.89733 0.96103 0.91708 1.21995 1.01999 0.95303 1.00109 1.22012 1.01711 0.96925 0.98909 1.21718 1.02994 1.01148 1.36548 0.92991 1.25668 0.94980 1.03263 0.93886 1.70814 1.40155 1.07948 1.36821 0.83555 0.75654 0.74605 0.76432 1.21514 1.21099 1.21489 1.20633 0.78042 0.88979 0.81313 1.90781 1.58362 1.50311 1.34300 0.92654 0.92509 0.92349 0.91721 0.91444 0.91637 0.92795 0.91970 0.72321 0.90016 0.89783 0.91335 0.97334 0.93840 0.93994 0.97369 0.91314 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.67 37.16 0.36 -0.58 16 2 C -0.12 -0.78 5.31 -26.73 -0.14 -0.92 16 3 C -0.09 -0.81 2.27 -90.62 -0.21 -1.01 16 4 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 5 C -0.15 -1.48 8.38 37.16 0.31 -1.17 16 6 C 0.09 1.08 3.39 -68.20 -0.23 0.85 16 7 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 8 N -0.73 -8.82 5.01 -59.19 -0.30 -9.12 16 9 C 0.70 12.17 7.05 -88.02 -0.62 11.54 16 10 O -0.54 -11.19 16.18 5.33 0.09 -11.10 16 11 N -0.56 -10.33 2.16 -120.73 -0.26 -10.59 16 12 C 0.14 2.92 4.66 -4.04 -0.02 2.90 16 13 C 0.04 0.97 0.57 -155.66 -0.09 0.88 16 14 C -0.14 -3.41 6.87 37.16 0.26 -3.15 16 15 C -0.14 -3.37 6.93 37.16 0.26 -3.11 16 16 C -0.59 -16.07 8.01 -34.44 -0.28 -16.34 16 17 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 18 C 0.03 0.73 5.10 -17.82 -0.09 0.64 16 19 N -0.92 -27.01 12.12 55.43 0.67 -26.34 16 20 Si 1.07 25.09 29.90 -169.99 -5.08 20.01 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.52 8.66 5.18 -10.56 -0.05 8.60 16 25 O -0.47 -8.89 16.75 5.59 0.09 -8.79 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 29 H 0.06 0.40 7.91 -51.93 -0.41 -0.01 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 32 H 0.05 0.64 7.44 -51.93 -0.39 0.26 16 33 H 0.06 0.62 7.41 -51.93 -0.38 0.24 16 34 H 0.43 3.98 8.76 -40.82 -0.36 3.63 16 35 H 0.08 1.73 8.00 -51.93 -0.42 1.32 16 36 H 0.08 1.83 7.85 -51.93 -0.41 1.42 16 37 H 0.07 1.86 5.19 -51.93 -0.27 1.60 16 38 H 0.01 0.18 6.81 -51.93 -0.35 -0.17 16 39 H 0.04 1.11 7.71 -51.93 -0.40 0.71 16 40 H 0.04 1.03 7.83 -51.93 -0.41 0.62 16 41 H 0.01 0.17 6.82 -51.93 -0.35 -0.19 16 42 H 0.07 1.84 5.25 -51.93 -0.27 1.56 16 43 H 0.28 8.18 3.57 -40.82 -0.15 8.03 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -32.25 328.99 -6.94 -39.19 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.56 Total: 2.66 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.55 Total: -0.87 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.11 Total: -46.05 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.18 Total: -19.90 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.01 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.25 -6.94 -39.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420081844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.152 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds