Wall clock time and date at job start Tue Mar 31 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47210 * 2 1 4 4 H 1.08999 * 109.47391 * 54.99366 * 3 2 1 5 5 C 1.53004 * 109.47049 * 294.99785 * 3 2 1 6 6 C 1.53000 * 109.47342 * 174.99989 * 3 2 1 7 7 H 1.08999 * 110.65278 * 307.91083 * 6 3 2 8 8 N 1.47316 * 110.60002 * 70.82724 * 6 3 2 9 9 C 1.34524 * 106.62027 * 118.30328 * 8 6 3 10 10 O 1.21540 * 123.76910 * 180.20668 * 9 8 6 11 11 N 1.33792 * 112.45792 * 0.38365 * 9 8 6 12 12 C 1.46502 * 124.17849 * 179.86299 * 11 9 8 13 13 C 1.53005 * 109.46923 * 269.69767 * 12 11 9 14 14 C 1.53000 * 109.46973 * 60.00386 * 13 12 11 15 15 C 1.52995 * 109.47264 * 299.99825 * 13 12 11 16 16 C 1.50703 * 109.46834 * 179.97438 * 13 12 11 17 17 H 1.08000 * 119.99826 * 359.85211 * 16 13 12 18 18 C 1.37876 * 119.99535 * 179.85359 * 16 13 12 19 19 N 1.31515 * 120.00308 * 1.53033 * 18 16 13 20 20 Si 1.86803 * 119.99569 * 181.53358 * 18 16 13 21 21 H 1.48505 * 109.46793 * 269.99838 * 20 18 16 22 22 H 1.48501 * 109.47348 * 150.00145 * 20 18 16 23 23 H 1.48500 * 109.47501 * 29.99668 * 20 18 16 24 24 C 1.34769 * 111.64264 * 359.59405 * 11 9 8 25 25 O 1.21242 * 127.15469 * 180.26341 * 24 11 9 26 26 H 1.09001 * 109.46904 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47071 * 299.99828 * 1 2 3 28 28 H 1.08999 * 109.47163 * 60.00410 * 1 2 3 29 29 H 1.09002 * 109.47627 * 239.99699 * 2 1 3 30 30 H 1.09004 * 109.47195 * 120.00057 * 2 1 3 31 31 H 1.09005 * 109.46947 * 60.00013 * 5 3 2 32 32 H 1.09001 * 109.47306 * 179.97438 * 5 3 2 33 33 H 1.08994 * 109.47321 * 300.00298 * 5 3 2 34 34 H 0.97002 * 126.68737 * 298.55896 * 8 6 3 35 35 H 1.08996 * 109.47023 * 149.70028 * 12 11 9 36 36 H 1.09000 * 109.47196 * 29.69673 * 12 11 9 37 37 H 1.09001 * 109.47321 * 172.47914 * 14 13 12 38 38 H 1.09007 * 109.47060 * 292.47104 * 14 13 12 39 39 H 1.08999 * 109.47853 * 52.47096 * 14 13 12 40 40 H 1.08994 * 109.47563 * 307.69599 * 15 13 12 41 41 H 1.09004 * 109.46743 * 67.69808 * 15 13 12 42 42 H 1.08995 * 109.47285 * 187.69188 * 15 13 12 43 43 H 0.96992 * 119.99884 * 356.81399 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 1 3.8811 0.8417 0.9772 8 7 4.1879 0.9544 -1.1160 9 6 4.9360 1.9644 -1.5956 10 8 5.5871 1.8957 -2.6195 11 7 4.8863 3.0515 -0.8173 12 6 5.6060 4.2968 -1.0959 13 6 6.9853 4.2473 -0.4354 14 6 7.7771 3.0643 -0.9961 15 6 6.8211 4.0806 1.0765 16 6 7.7259 5.5281 -0.7226 17 1 7.2603 6.2990 -1.3187 18 6 8.9977 5.7154 -0.2243 19 7 9.5762 4.7646 0.4762 20 14 9.8990 7.3201 -0.5441 21 1 10.6774 7.2080 -1.8039 22 1 10.8218 7.6030 0.5844 23 1 8.9144 8.4249 -0.6673 24 6 4.0878 2.8615 0.2516 25 8 3.8390 3.6585 1.1307 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 0.5489 2.1252 -1.3970 32 1 1.9982 3.1543 -1.3073 33 1 2.0698 1.5875 -2.1492 34 1 4.0770 0.0762 -1.5127 35 1 5.0419 5.1396 -0.6965 36 1 5.7230 4.4156 -2.1731 37 1 8.8022 3.1059 -0.6279 38 1 7.3133 2.1316 -0.6747 39 1 7.7799 3.1122 -2.0851 40 1 6.1444 4.8465 1.4552 41 1 6.4097 3.0942 1.2906 42 1 7.7922 4.1821 1.5608 43 1 9.0913 3.9501 0.6816 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420081844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:53 Heat of formation + Delta-G solvation = -73.856153 kcal Electronic energy + Delta-G solvation = -24107.195204 eV Core-core repulsion = 20766.325351 eV Total energy + Delta-G solvation = -3340.869853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.62068 -39.65030 -38.99017 -37.82202 -36.49708 -34.80443 -32.53865 -30.79085 -28.64101 -28.03762 -27.97881 -26.80426 -25.08814 -23.61354 -22.02264 -21.05653 -20.46698 -19.12766 -18.92095 -18.01961 -17.43395 -16.60538 -16.58656 -15.87236 -15.69119 -15.59988 -15.38682 -15.05450 -14.76397 -14.69605 -14.54613 -14.26743 -13.44311 -13.27998 -13.13286 -13.00098 -12.67655 -12.65290 -12.56960 -12.43815 -12.27677 -12.12817 -12.01537 -11.87271 -11.70242 -11.61168 -11.48998 -11.08328 -10.70129 -10.47703 -10.36794 -10.29289 -8.41128 -6.27920 0.62072 1.27417 1.56105 1.63743 1.80828 2.02221 2.22184 2.60528 2.95940 3.24245 3.47942 3.75456 3.97724 3.98976 4.16969 4.28415 4.35117 4.45280 4.50434 4.53377 4.57097 4.68335 4.69948 4.71314 4.75317 4.87738 4.90590 5.00740 5.09653 5.10386 5.11797 5.18752 5.25090 5.40723 5.50935 5.52606 5.71643 5.85099 6.09658 6.16174 6.27015 6.43281 6.68080 7.16131 7.51011 8.85221 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035736 B = 0.004587 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.336732 B = 6102.418428 C = 6315.964139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.081 4.081 4 H 0.096 0.904 5 C -0.152 4.152 6 C 0.106 3.894 7 H 0.153 0.847 8 N -0.701 5.701 9 C 0.698 3.302 10 O -0.578 6.578 11 N -0.573 5.573 12 C 0.147 3.853 13 C 0.031 3.969 14 C -0.116 4.116 15 C -0.119 4.119 16 C -0.600 4.600 17 H 0.049 0.951 18 C -0.020 4.020 19 N -0.940 5.940 20 Si 1.112 2.888 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.272 1.272 24 C 0.515 3.485 25 O -0.496 6.496 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.026 0.974 33 H 0.060 0.940 34 H 0.451 0.549 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.020 0.980 39 H 0.029 0.971 40 H 0.034 0.966 41 H 0.022 0.978 42 H 0.044 0.956 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.448 -11.331 -0.385 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.101 4.101 4 H 0.114 0.886 5 C -0.209 4.209 6 C -0.002 4.002 7 H 0.170 0.830 8 N -0.367 5.367 9 C 0.399 3.601 10 O -0.454 6.454 11 N -0.317 5.317 12 C 0.026 3.974 13 C 0.030 3.970 14 C -0.174 4.174 15 C -0.177 4.177 16 C -0.638 4.638 17 H 0.067 0.933 18 C -0.219 4.219 19 N -0.581 5.581 20 Si 0.935 3.065 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.197 1.197 24 C 0.304 3.696 25 O -0.368 6.368 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.298 0.702 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.783 -10.073 -0.206 19.575 hybrid contribution -1.036 -0.876 -0.436 1.425 sum -17.818 -10.949 -0.642 20.924 Atomic orbital electron populations 1.21809 0.94817 1.02355 1.02109 1.21551 0.96819 0.93021 1.03539 1.21414 0.88805 0.99887 0.99987 0.88571 1.21912 1.03004 0.98862 0.97137 1.22373 0.96798 0.90867 0.90171 0.82980 1.45344 1.49274 1.15685 1.26362 1.16010 0.80236 0.81165 0.82725 1.90975 1.46517 1.82390 1.25526 1.46520 1.44583 1.15653 1.24916 1.21629 0.92705 0.82210 1.00828 1.18671 0.91324 0.94965 0.92090 1.21756 1.00633 0.96062 0.98929 1.21782 1.00052 0.97440 0.98404 1.22070 1.03441 1.02159 1.36155 0.93295 1.26946 0.96191 1.05429 0.93333 1.70898 1.40573 1.08410 1.38259 0.82997 0.75133 0.71826 0.76571 1.20433 1.21147 1.19727 1.21481 0.77212 0.90816 0.80105 1.90764 1.59118 1.51780 1.35113 0.91685 0.92560 0.92559 0.90793 0.90012 0.89854 0.95518 0.92125 0.70160 0.90241 0.90623 0.93734 0.96122 0.95167 0.94708 0.95895 0.93720 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.67 71.98 0.70 -0.66 16 2 C -0.11 -1.03 5.31 30.59 0.16 -0.87 16 3 C -0.08 -1.22 2.27 -10.79 -0.02 -1.25 16 4 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 5 C -0.15 -2.66 8.38 71.98 0.60 -2.06 16 6 C 0.11 2.13 3.39 44.37 0.15 2.29 16 7 H 0.15 2.30 8.14 -2.39 -0.02 2.28 16 8 N -0.70 -15.11 5.01 -459.61 -2.30 -17.41 16 9 C 0.70 23.48 7.05 179.44 1.27 24.74 16 10 O -0.58 -23.91 16.18 -3.84 -0.06 -23.98 16 11 N -0.57 -20.75 2.16 -773.11 -1.67 -22.42 16 12 C 0.15 6.42 4.66 86.38 0.40 6.82 16 13 C 0.03 1.54 0.57 -52.93 -0.03 1.51 16 14 C -0.12 -5.89 6.87 71.98 0.49 -5.39 16 15 C -0.12 -5.87 6.93 71.98 0.50 -5.37 16 16 C -0.60 -33.40 8.01 25.60 0.21 -33.19 16 17 H 0.05 2.69 7.74 -2.91 -0.02 2.66 16 18 C -0.02 -1.13 5.10 84.65 0.43 -0.70 16 19 N -0.94 -56.29 12.12 21.45 0.26 -56.03 16 20 Si 1.11 50.62 29.90 68.60 2.05 52.67 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 C 0.52 16.39 5.18 87.94 0.46 16.84 16 25 O -0.50 -18.52 16.75 -2.91 -0.05 -18.57 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.52 6.56 -2.39 -0.02 0.51 16 29 H 0.07 0.58 7.91 -2.39 -0.02 0.56 16 30 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.08 1.16 6.57 -2.38 -0.02 1.14 16 32 H 0.03 0.61 7.44 -2.39 -0.02 0.59 16 33 H 0.06 1.08 7.41 -2.39 -0.02 1.06 16 34 H 0.45 6.75 8.76 -92.71 -0.81 5.94 16 35 H 0.08 3.44 8.00 -2.39 -0.02 3.42 16 36 H 0.08 3.38 7.85 -2.39 -0.02 3.36 16 37 H 0.04 2.47 5.19 -2.39 -0.01 2.46 16 38 H 0.02 0.95 6.81 -2.38 -0.02 0.93 16 39 H 0.03 1.56 7.71 -2.39 -0.02 1.54 16 40 H 0.03 1.72 7.83 -2.39 -0.02 1.70 16 41 H 0.02 1.01 6.82 -2.38 -0.02 1.00 16 42 H 0.04 2.42 5.25 -2.39 -0.01 2.41 16 43 H 0.27 16.35 3.57 -92.71 -0.33 16.02 16 Total: -1.00 -71.16 328.99 4.18 -66.98 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.64 Total: 16.04 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 5.31 Total: 2.72 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -3.71 Total: -95.86 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -0.11 Total: -42.55 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.05 Total: 52.67 kcal Total: -71.16 4.18 -66.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420081844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.873 kcal (2) G-P(sol) polarization free energy of solvation -71.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds