Wall clock time and date at job start Tue Mar 31 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46928 * 2 1 4 4 H 1.08996 * 109.47412 * 305.00353 * 3 2 1 5 5 C 1.53008 * 109.46991 * 65.00243 * 3 2 1 6 6 C 1.53003 * 109.47153 * 184.99893 * 3 2 1 7 7 H 1.08998 * 110.65127 * 61.46185 * 6 3 2 8 8 N 1.47314 * 110.59942 * 298.55121 * 6 3 2 9 9 C 1.34525 * 106.61631 * 241.47323 * 8 6 3 10 10 O 1.21543 * 123.77052 * 180.02562 * 9 8 6 11 11 N 1.33794 * 112.45990 * 359.97438 * 9 8 6 12 12 C 1.46504 * 124.17848 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47189 * 90.02281 * 12 11 9 14 14 C 1.53002 * 109.47083 * 60.00433 * 13 12 11 15 15 C 1.52998 * 109.47458 * 300.00203 * 13 12 11 16 16 C 1.50706 * 109.46930 * 179.97438 * 13 12 11 17 17 H 1.07997 * 120.00045 * 4.79857 * 16 13 12 18 18 C 1.37875 * 119.99994 * 184.79266 * 16 13 12 19 19 N 1.31522 * 120.00057 * 351.80130 * 18 16 13 20 20 Si 1.86796 * 119.99876 * 171.79807 * 18 16 13 21 21 H 1.48497 * 109.47171 * 90.00456 * 20 18 16 22 22 H 1.48495 * 109.47254 * 330.00034 * 20 18 16 23 23 H 1.48509 * 109.47130 * 210.00489 * 20 18 16 24 24 C 1.34767 * 111.64482 * 0.23000 * 11 9 8 25 25 O 1.21226 * 127.16146 * 179.73130 * 24 11 9 26 26 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46883 * 299.99753 * 1 2 3 28 28 H 1.08998 * 109.47396 * 59.99743 * 1 2 3 29 29 H 1.08998 * 109.47226 * 239.99941 * 2 1 3 30 30 H 1.08997 * 109.47035 * 119.99862 * 2 1 3 31 31 H 1.08996 * 109.46953 * 59.99829 * 5 3 2 32 32 H 1.09006 * 109.46573 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47094 * 299.99566 * 5 3 2 34 34 H 0.96998 * 126.69391 * 61.49912 * 8 6 3 35 35 H 1.08998 * 109.47066 * 330.01861 * 12 11 9 36 36 H 1.08994 * 109.46815 * 210.02791 * 12 11 9 37 37 H 1.08997 * 109.47018 * 172.69595 * 14 13 12 38 38 H 1.09003 * 109.46545 * 292.68917 * 14 13 12 39 39 H 1.08997 * 109.47568 * 52.68532 * 14 13 12 40 40 H 1.09004 * 109.46744 * 307.55063 * 15 13 12 41 41 H 1.08994 * 109.47206 * 67.55078 * 15 13 12 42 42 H 1.08997 * 109.47071 * 187.55344 * 15 13 12 43 43 H 0.97001 * 119.99444 * 5.69854 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3075 6 6 3.5648 1.4444 -0.1257 7 1 3.8738 0.9838 -1.0640 8 7 4.1801 0.7511 1.0192 9 6 4.9452 1.6584 1.6525 10 8 5.5987 1.4144 2.6478 11 7 4.9073 2.8592 1.0636 12 6 5.6436 4.0329 1.5396 13 6 7.0229 4.0722 0.8787 14 6 6.8585 4.1548 -0.6402 15 6 7.7977 2.8032 1.2396 16 6 7.7801 5.2799 1.3679 17 1 7.3551 5.9090 2.1360 18 6 9.0153 5.5816 0.8349 19 7 9.6050 4.7337 0.0206 20 14 9.8513 7.1946 1.2693 21 1 10.6948 7.0055 2.4768 22 1 8.8208 8.2284 1.5423 23 1 10.7029 7.6323 0.1341 24 6 4.1037 2.8572 -0.0182 25 8 3.8626 3.7906 -0.7532 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0698 1.5875 2.1492 32 1 1.9989 3.1541 1.3076 33 1 0.5489 2.1252 1.3970 34 1 4.0578 -0.1785 1.2678 35 1 5.7607 3.9742 2.6217 36 1 5.0916 4.9369 1.2825 37 1 7.8325 4.3132 -1.1030 38 1 6.4275 3.2244 -1.0100 39 1 6.1983 4.9854 -0.8896 40 1 7.7993 2.6740 2.3219 41 1 7.3219 1.9416 0.7714 42 1 8.8239 2.8902 0.8826 43 1 9.1370 3.9355 -0.2704 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420081845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:57 Heat of formation + Delta-G solvation = -53.543248 kcal Electronic energy + Delta-G solvation = -24133.191640 eV Core-core repulsion = 20793.202620 eV Total energy + Delta-G solvation = -3339.989019 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.31220 -38.26236 -37.58915 -36.27689 -35.18948 -33.42151 -30.62409 -30.14923 -27.37674 -26.45151 -25.94845 -24.92906 -24.07447 -22.44594 -20.51633 -20.20148 -18.71867 -17.61003 -17.33309 -16.57351 -16.09548 -15.57051 -15.09661 -14.88787 -14.61862 -14.09272 -13.82007 -13.71550 -13.50411 -12.97672 -12.85093 -12.65445 -12.46248 -12.29321 -11.91622 -11.53161 -11.37707 -11.24393 -11.10240 -10.96772 -10.73562 -10.61956 -10.54256 -10.39144 -10.28186 -10.01396 -9.76922 -9.66819 -9.33914 -8.88315 -8.45535 -8.13727 -6.20862 -4.05238 1.93605 2.60873 3.33196 3.41887 3.46036 3.49723 3.64833 4.11035 4.32162 4.52204 4.55278 4.69976 4.90809 5.16913 5.21696 5.30644 5.33256 5.38004 5.49513 5.65526 5.67927 5.73434 5.75691 5.98950 6.01860 6.08090 6.09509 6.11416 6.30101 6.60180 6.71141 6.87076 6.89497 6.93756 7.19147 7.23713 7.47626 7.55779 7.73201 7.79645 8.22819 8.43014 8.48267 8.87942 9.65973 11.04917 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035344 B = 0.004627 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.016668 B = 6049.434060 C = 6277.012888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.088 4.088 4 H 0.094 0.906 5 C -0.154 4.154 6 C 0.094 3.906 7 H 0.121 0.879 8 N -0.730 5.730 9 C 0.702 3.298 10 O -0.538 6.538 11 N -0.563 5.563 12 C 0.136 3.864 13 C 0.039 3.961 14 C -0.138 4.138 15 C -0.134 4.134 16 C -0.587 4.587 17 H 0.052 0.948 18 C 0.027 3.973 19 N -0.916 5.916 20 Si 1.068 2.932 21 H -0.289 1.289 22 H -0.288 1.288 23 H -0.285 1.285 24 C 0.525 3.475 25 O -0.468 6.468 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.433 0.567 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.007 0.993 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.007 0.993 42 H 0.065 0.935 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.960 -9.679 -0.911 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.108 4.108 4 H 0.113 0.887 5 C -0.211 4.211 6 C -0.016 4.016 7 H 0.138 0.862 8 N -0.396 5.396 9 C 0.403 3.597 10 O -0.411 6.411 11 N -0.308 5.308 12 C 0.017 3.983 13 C 0.038 3.962 14 C -0.196 4.196 15 C -0.192 4.192 16 C -0.625 4.625 17 H 0.070 0.930 18 C -0.178 4.178 19 N -0.556 5.556 20 Si 0.897 3.103 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.311 3.689 25 O -0.338 6.338 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.277 0.723 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.026 0.974 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.026 0.974 42 H 0.084 0.916 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.273 -8.304 -0.954 17.411 hybrid contribution -1.426 -1.371 0.253 1.995 sum -16.699 -9.676 -0.701 19.313 Atomic orbital electron populations 1.21803 0.95290 1.01721 1.02193 1.21543 0.96478 0.95166 1.02340 1.21373 0.91159 0.97874 1.00356 0.88748 1.21933 1.01956 1.00537 0.96721 1.22179 0.95340 0.91690 0.92367 0.86188 1.45520 1.50453 1.13179 1.30412 1.15900 0.79983 0.80895 0.82950 1.90998 1.44725 1.80325 1.25091 1.46561 1.43789 1.12809 1.27626 1.22102 0.93712 0.82812 0.99715 1.18639 0.89753 0.95554 0.92228 1.21999 1.01823 0.97454 0.98365 1.22005 1.01708 0.95512 1.00001 1.21705 1.06084 1.10338 1.24395 0.92976 1.25666 0.94596 1.02668 0.94827 1.70819 1.38842 1.12433 1.33515 0.83567 0.75629 0.74904 0.76214 1.21550 1.21456 1.21069 1.20601 0.78069 0.89908 0.80273 1.90778 1.58865 1.40278 1.43840 0.92651 0.92349 0.92516 0.91463 0.91664 0.92118 0.92629 0.91546 0.72312 0.89849 0.89963 0.91166 0.97352 0.93979 0.93841 0.97352 0.91605 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.67 37.16 0.36 -0.58 16 2 C -0.12 -0.79 5.19 -26.73 -0.14 -0.93 16 3 C -0.09 -0.79 2.36 -90.61 -0.21 -1.01 16 4 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 5 C -0.15 -1.55 8.43 37.16 0.31 -1.23 16 6 C 0.09 1.08 3.49 -68.20 -0.24 0.84 16 7 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 8 N -0.73 -8.84 5.13 -59.19 -0.30 -9.15 16 9 C 0.70 12.17 7.11 -88.02 -0.63 11.55 16 10 O -0.54 -11.20 16.14 5.33 0.09 -11.12 16 11 N -0.56 -10.33 2.16 -120.73 -0.26 -10.59 16 12 C 0.14 2.92 4.67 -4.04 -0.02 2.90 16 13 C 0.04 0.97 0.57 -155.66 -0.09 0.89 16 14 C -0.14 -3.39 6.92 37.16 0.26 -3.14 16 15 C -0.13 -3.36 6.89 37.16 0.26 -3.10 16 16 C -0.59 -16.10 8.00 -34.44 -0.28 -16.37 16 17 H 0.05 1.41 7.76 -52.49 -0.41 1.01 16 18 C 0.03 0.75 5.07 -17.82 -0.09 0.66 16 19 N -0.92 -26.96 12.16 55.43 0.67 -26.29 16 20 Si 1.07 25.07 29.91 -169.99 -5.08 19.99 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.53 8.67 4.71 -10.55 -0.05 8.62 16 25 O -0.47 -8.87 16.80 5.60 0.09 -8.78 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.42 7.44 -51.93 -0.39 0.03 16 31 H 0.06 0.64 7.62 -51.93 -0.40 0.24 16 32 H 0.05 0.68 7.14 -51.93 -0.37 0.31 16 33 H 0.07 0.55 6.57 -51.93 -0.34 0.21 16 34 H 0.43 4.00 8.39 -40.82 -0.34 3.66 16 35 H 0.08 1.81 7.86 -51.93 -0.41 1.40 16 36 H 0.08 1.74 8.00 -51.93 -0.42 1.33 16 37 H 0.07 1.88 5.17 -51.93 -0.27 1.61 16 38 H 0.01 0.17 6.81 -51.93 -0.35 -0.18 16 39 H 0.04 1.03 7.87 -51.93 -0.41 0.62 16 40 H 0.04 1.11 7.70 -51.93 -0.40 0.71 16 41 H 0.01 0.18 6.79 -51.93 -0.35 -0.17 16 42 H 0.07 1.78 5.30 -51.93 -0.28 1.51 16 43 H 0.28 8.17 3.59 -40.82 -0.15 8.02 16 LS Contribution 327.98 15.07 4.94 4.94 Total: -1.00 -32.24 327.98 -6.93 -39.17 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.52 Total: 2.73 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -0.55 Total: -0.91 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.11 Total: -46.03 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.18 Total: -19.90 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.99 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.24 -6.93 -39.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420081845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.373 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds