Wall clock time and date at job start Tue Mar 31 2020 06:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46928 * 2 1 4 4 H 1.08996 * 109.47412 * 305.00353 * 3 2 1 5 5 C 1.53008 * 109.46991 * 65.00243 * 3 2 1 6 6 C 1.53003 * 109.47153 * 184.99893 * 3 2 1 7 7 H 1.08998 * 110.65127 * 61.46185 * 6 3 2 8 8 N 1.47314 * 110.59942 * 298.55121 * 6 3 2 9 9 C 1.34525 * 106.61631 * 241.47323 * 8 6 3 10 10 O 1.21543 * 123.77052 * 180.02562 * 9 8 6 11 11 N 1.33794 * 112.45990 * 359.97438 * 9 8 6 12 12 C 1.46504 * 124.17848 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47189 * 90.02281 * 12 11 9 14 14 C 1.53002 * 109.47083 * 60.00433 * 13 12 11 15 15 C 1.52998 * 109.47458 * 300.00203 * 13 12 11 16 16 C 1.50706 * 109.46930 * 179.97438 * 13 12 11 17 17 H 1.07997 * 120.00045 * 4.79857 * 16 13 12 18 18 C 1.37875 * 119.99994 * 184.79266 * 16 13 12 19 19 N 1.31522 * 120.00057 * 351.80130 * 18 16 13 20 20 Si 1.86796 * 119.99876 * 171.79807 * 18 16 13 21 21 H 1.48497 * 109.47171 * 90.00456 * 20 18 16 22 22 H 1.48495 * 109.47254 * 330.00034 * 20 18 16 23 23 H 1.48509 * 109.47130 * 210.00489 * 20 18 16 24 24 C 1.34767 * 111.64482 * 0.23000 * 11 9 8 25 25 O 1.21226 * 127.16146 * 179.73130 * 24 11 9 26 26 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46883 * 299.99753 * 1 2 3 28 28 H 1.08998 * 109.47396 * 59.99743 * 1 2 3 29 29 H 1.08998 * 109.47226 * 239.99941 * 2 1 3 30 30 H 1.08997 * 109.47035 * 119.99862 * 2 1 3 31 31 H 1.08996 * 109.46953 * 59.99829 * 5 3 2 32 32 H 1.09006 * 109.46573 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47094 * 299.99566 * 5 3 2 34 34 H 0.96998 * 126.69391 * 61.49912 * 8 6 3 35 35 H 1.08998 * 109.47066 * 330.01861 * 12 11 9 36 36 H 1.08994 * 109.46815 * 210.02791 * 12 11 9 37 37 H 1.08997 * 109.47018 * 172.69595 * 14 13 12 38 38 H 1.09003 * 109.46545 * 292.68917 * 14 13 12 39 39 H 1.08997 * 109.47568 * 52.68532 * 14 13 12 40 40 H 1.09004 * 109.46744 * 307.55063 * 15 13 12 41 41 H 1.08994 * 109.47206 * 67.55078 * 15 13 12 42 42 H 1.08997 * 109.47071 * 187.55344 * 15 13 12 43 43 H 0.97001 * 119.99444 * 5.69854 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3075 6 6 3.5648 1.4444 -0.1257 7 1 3.8738 0.9838 -1.0640 8 7 4.1801 0.7511 1.0192 9 6 4.9452 1.6584 1.6525 10 8 5.5987 1.4144 2.6478 11 7 4.9073 2.8592 1.0636 12 6 5.6436 4.0329 1.5396 13 6 7.0229 4.0722 0.8787 14 6 6.8585 4.1548 -0.6402 15 6 7.7977 2.8032 1.2396 16 6 7.7801 5.2799 1.3679 17 1 7.3551 5.9090 2.1360 18 6 9.0153 5.5816 0.8349 19 7 9.6050 4.7337 0.0206 20 14 9.8513 7.1946 1.2693 21 1 10.6948 7.0055 2.4768 22 1 8.8208 8.2284 1.5423 23 1 10.7029 7.6323 0.1341 24 6 4.1037 2.8572 -0.0182 25 8 3.8626 3.7906 -0.7532 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0698 1.5875 2.1492 32 1 1.9989 3.1541 1.3076 33 1 0.5489 2.1252 1.3970 34 1 4.0578 -0.1785 1.2678 35 1 5.7607 3.9742 2.6217 36 1 5.0916 4.9369 1.2825 37 1 7.8325 4.3132 -1.1030 38 1 6.4275 3.2244 -1.0100 39 1 6.1983 4.9854 -0.8896 40 1 7.7993 2.6740 2.3219 41 1 7.3219 1.9416 0.7714 42 1 8.8239 2.8902 0.8826 43 1 9.1370 3.9355 -0.2704 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420081845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:56 Heat of formation + Delta-G solvation = -74.114464 kcal Electronic energy + Delta-G solvation = -24134.083674 eV Core-core repulsion = 20793.202620 eV Total energy + Delta-G solvation = -3340.881054 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.62701 -39.65577 -38.98277 -37.81104 -36.48868 -34.79285 -32.54221 -30.86371 -28.57111 -28.03650 -27.96912 -26.81910 -25.09890 -23.65495 -21.99508 -21.03656 -20.45584 -19.12866 -18.92329 -18.04929 -17.41688 -16.59373 -16.57914 -15.94197 -15.70374 -15.60504 -15.36686 -15.01356 -14.72844 -14.70799 -14.52461 -14.29132 -13.45927 -13.26280 -13.18779 -12.98673 -12.67774 -12.64333 -12.55456 -12.43663 -12.30890 -12.12829 -12.01375 -11.87183 -11.69829 -11.60809 -11.50280 -11.08477 -10.72355 -10.53073 -10.33679 -10.23961 -8.41516 -6.27365 0.62875 1.27612 1.55935 1.63809 1.80994 2.02398 2.22420 2.60239 2.96085 3.23342 3.47451 3.75581 3.97847 3.99054 4.17349 4.27577 4.35363 4.45500 4.50137 4.52429 4.56649 4.68350 4.69012 4.70979 4.75542 4.87902 4.90460 4.99832 5.09122 5.09767 5.11244 5.18875 5.24605 5.40057 5.50878 5.52287 5.71498 5.84948 6.10225 6.16314 6.27433 6.43853 6.68488 7.16091 7.51082 8.84795 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035344 B = 0.004627 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.016668 B = 6049.434060 C = 6277.012888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.080 4.080 4 H 0.101 0.899 5 C -0.154 4.154 6 C 0.105 3.895 7 H 0.153 0.847 8 N -0.701 5.701 9 C 0.697 3.303 10 O -0.578 6.578 11 N -0.573 5.573 12 C 0.148 3.852 13 C 0.031 3.969 14 C -0.120 4.120 15 C -0.114 4.114 16 C -0.601 4.601 17 H 0.049 0.951 18 C -0.019 4.019 19 N -0.939 5.939 20 Si 1.111 2.889 21 H -0.278 1.278 22 H -0.272 1.272 23 H -0.285 1.285 24 C 0.516 3.484 25 O -0.496 6.496 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.027 0.973 33 H 0.084 0.916 34 H 0.451 0.549 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.022 0.978 39 H 0.034 0.966 40 H 0.029 0.971 41 H 0.020 0.980 42 H 0.041 0.959 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.671 -10.928 -1.459 21.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.100 4.100 4 H 0.119 0.881 5 C -0.211 4.211 6 C -0.003 4.003 7 H 0.171 0.829 8 N -0.367 5.367 9 C 0.398 3.602 10 O -0.455 6.455 11 N -0.317 5.317 12 C 0.026 3.974 13 C 0.030 3.970 14 C -0.178 4.178 15 C -0.172 4.172 16 C -0.639 4.639 17 H 0.067 0.933 18 C -0.218 4.218 19 N -0.580 5.580 20 Si 0.934 3.066 21 H -0.204 1.204 22 H -0.197 1.197 23 H -0.211 1.211 24 C 0.305 3.695 25 O -0.368 6.368 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.103 0.897 34 H 0.298 0.702 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.041 0.959 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.039 0.961 42 H 0.060 0.940 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.041 -9.613 -1.519 19.624 hybrid contribution -0.974 -1.008 0.414 1.461 sum -18.015 -10.621 -1.105 20.942 Atomic orbital electron populations 1.21805 0.94750 1.02353 1.02137 1.21538 0.96869 0.93119 1.03470 1.21412 0.88821 0.99810 0.99940 0.88080 1.21939 1.03144 0.98859 0.97172 1.22386 0.96810 0.88015 0.93077 0.82937 1.45362 1.48601 1.13208 1.29551 1.16024 0.80300 0.81150 0.82705 1.90975 1.46689 1.80903 1.26885 1.46523 1.44065 1.12490 1.28607 1.21624 0.92424 0.84385 0.98919 1.18670 0.91332 0.94492 0.92546 1.21770 1.00184 0.97810 0.98000 1.21765 1.00337 0.96183 0.98912 1.22054 1.06496 1.11193 1.24206 0.93314 1.26943 0.95651 1.04874 0.94367 1.70903 1.39338 1.12927 1.34842 0.83008 0.75342 0.71978 0.76263 1.20441 1.19723 1.21106 1.21443 0.77256 0.91741 0.79034 1.90761 1.59608 1.41858 1.44538 0.91715 0.92705 0.92343 0.89802 0.91096 0.92703 0.95355 0.89707 0.70173 0.90702 0.90202 0.93557 0.95869 0.94718 0.95159 0.96128 0.94005 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.67 71.98 0.70 -0.65 16 2 C -0.11 -1.05 5.19 30.59 0.16 -0.89 16 3 C -0.08 -1.20 2.36 -10.79 -0.03 -1.23 16 4 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 5 C -0.15 -2.80 8.43 71.98 0.61 -2.19 16 6 C 0.11 2.11 3.49 44.37 0.16 2.27 16 7 H 0.15 2.29 8.14 -2.39 -0.02 2.27 16 8 N -0.70 -15.15 5.13 -459.59 -2.36 -17.51 16 9 C 0.70 23.50 7.11 179.44 1.28 24.77 16 10 O -0.58 -23.97 16.14 -3.85 -0.06 -24.03 16 11 N -0.57 -20.75 2.16 -773.13 -1.67 -22.42 16 12 C 0.15 6.43 4.67 86.38 0.40 6.83 16 13 C 0.03 1.54 0.57 -52.93 -0.03 1.51 16 14 C -0.12 -5.92 6.92 71.98 0.50 -5.42 16 15 C -0.11 -5.78 6.89 71.98 0.50 -5.29 16 16 C -0.60 -33.48 8.00 25.60 0.20 -33.28 16 17 H 0.05 2.68 7.76 -2.91 -0.02 2.66 16 18 C -0.02 -1.09 5.07 84.65 0.43 -0.66 16 19 N -0.94 -56.20 12.16 21.45 0.26 -55.94 16 20 Si 1.11 50.58 29.91 68.60 2.05 52.63 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 24 C 0.52 16.40 4.71 87.94 0.41 16.82 16 25 O -0.50 -18.48 16.80 -2.86 -0.05 -18.53 16 26 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 27 H 0.05 0.52 6.56 -2.39 -0.02 0.51 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.61 7.44 -2.39 -0.02 0.59 16 31 H 0.05 1.05 7.62 -2.39 -0.02 1.04 16 32 H 0.03 0.66 7.14 -2.38 -0.02 0.65 16 33 H 0.08 1.22 6.57 -2.39 -0.02 1.20 16 34 H 0.45 6.80 8.39 -92.71 -0.78 6.02 16 35 H 0.07 3.34 7.86 -2.39 -0.02 3.33 16 36 H 0.08 3.46 8.00 -2.39 -0.02 3.44 16 37 H 0.05 2.51 5.17 -2.39 -0.01 2.50 16 38 H 0.02 1.02 6.81 -2.39 -0.02 1.01 16 39 H 0.03 1.71 7.87 -2.39 -0.02 1.69 16 40 H 0.03 1.56 7.70 -2.39 -0.02 1.54 16 41 H 0.02 0.94 6.79 -2.39 -0.02 0.93 16 42 H 0.04 2.31 5.30 -2.39 -0.01 2.30 16 43 H 0.27 16.33 3.59 -92.71 -0.33 16.00 16 Total: -1.00 -71.20 327.98 4.13 -67.08 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.67 Total: 16.11 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 5.28 Total: 2.62 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -3.77 Total: -95.87 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -0.11 Total: -42.56 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.05 Total: 52.63 kcal Total: -71.20 4.13 -67.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420081845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.039 kcal (2) G-P(sol) polarization free energy of solvation -71.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds