Wall clock time and date at job start Tue Mar 31 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47367 * 2 1 4 4 N 1.46502 * 109.47405 * 179.97438 * 3 2 1 5 5 C 1.34528 * 126.68909 * 269.97611 * 4 3 2 6 6 O 1.21528 * 123.77610 * 0.02562 * 5 4 3 7 7 N 1.33800 * 112.45125 * 180.02562 * 5 4 3 8 8 C 1.46495 * 124.17255 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47370 * 269.96300 * 8 7 5 10 10 C 1.52992 * 109.47396 * 300.00236 * 9 8 7 11 11 C 1.53004 * 109.46877 * 60.00530 * 9 8 7 12 12 C 1.50700 * 109.47212 * 179.97438 * 9 8 7 13 13 H 1.07997 * 120.00485 * 1.20785 * 12 9 8 14 14 C 1.37878 * 119.99706 * 181.20072 * 12 9 8 15 15 N 1.31517 * 119.99731 * 194.17809 * 14 12 9 16 16 Si 1.86799 * 120.00267 * 14.18140 * 14 12 9 17 17 H 1.48494 * 109.47247 * 84.53574 * 16 14 12 18 18 H 1.48498 * 109.47038 * 204.53410 * 16 14 12 19 19 H 1.48500 * 109.47104 * 324.53251 * 16 14 12 20 20 C 1.34764 * 111.64710 * 0.02562 * 7 5 4 21 21 O 1.21229 * 127.15699 * 179.97438 * 20 7 5 22 22 C 1.47311 * 126.68656 * 89.99854 * 4 3 2 23 23 H 1.08998 * 110.60185 * 298.51099 * 22 4 3 24 24 C 1.53001 * 110.59662 * 61.45703 * 22 4 3 25 25 H 1.08998 * 109.47053 * 59.99764 * 1 2 3 26 26 H 1.08992 * 109.47259 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46650 * 299.99832 * 1 2 3 28 28 H 1.08996 * 109.47236 * 239.99746 * 2 1 3 29 29 H 1.09007 * 109.46854 * 120.00020 * 2 1 3 30 30 H 1.09004 * 109.46926 * 59.99953 * 3 2 1 31 31 H 1.08998 * 109.47226 * 300.00129 * 3 2 1 32 32 H 1.09004 * 109.47563 * 29.96523 * 8 7 5 33 33 H 1.09007 * 109.47086 * 149.96602 * 8 7 5 34 34 H 1.09006 * 109.47145 * 69.50527 * 10 9 8 35 35 H 1.09004 * 109.47850 * 189.50411 * 10 9 8 36 36 H 1.08999 * 109.47153 * 309.50593 * 10 9 8 37 37 H 1.08997 * 109.47656 * 59.99716 * 11 9 8 38 38 H 1.09000 * 109.47070 * 179.97438 * 11 9 8 39 39 H 1.09006 * 109.46760 * 299.99793 * 11 9 8 40 40 H 0.97006 * 119.99866 * 180.02562 * 15 14 12 41 41 H 1.09009 * 109.46643 * 175.62702 * 24 22 4 42 42 H 1.08996 * 109.46964 * 295.62279 * 24 22 4 43 43 H 1.09002 * 109.47190 * 55.62800 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.3084 1.4431 1.0797 6 8 3.9016 1.4433 2.2249 7 7 5.6055 1.4435 0.7512 8 6 6.7007 1.4436 1.7241 9 6 7.0823 2.8862 2.0623 10 6 7.5307 3.6070 0.7895 11 6 5.8715 3.6078 2.6575 12 6 8.2086 2.8863 3.0636 13 1 8.6250 1.9513 3.4081 14 6 8.7075 4.0802 3.5398 15 7 9.8530 4.1033 4.1854 16 14 7.7564 5.6647 3.2679 17 1 6.7352 5.8184 4.3350 18 1 8.6922 6.8170 3.3088 19 1 7.0857 5.6186 1.9438 20 6 5.7798 1.4437 -0.5851 21 8 6.8326 1.4445 -1.1862 22 6 4.3857 1.4423 -1.1803 23 1 4.2246 0.5456 -1.7787 24 6 4.1588 2.7003 -2.0211 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 6.3813 0.9301 2.6310 33 1 7.5634 0.9295 1.3001 34 1 6.6721 3.7563 0.1348 35 1 7.9602 4.5739 1.0515 36 1 8.2793 3.0043 0.2752 37 1 5.5520 3.0943 3.5643 38 1 6.1434 4.6353 2.8989 39 1 5.0565 3.6077 1.9336 40 1 10.2038 4.9432 4.5208 41 1 4.8717 2.7196 -2.8456 42 1 3.1439 2.6935 -2.4184 43 1 4.2995 3.5838 -1.3984 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420084343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:29 Heat of formation + Delta-G solvation = -31.983800 kcal Electronic energy + Delta-G solvation = -24158.705886 eV Core-core repulsion = 20819.651755 eV Total energy + Delta-G solvation = -3339.054131 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.23888 -38.37360 -37.19132 -35.96793 -35.06897 -33.32580 -31.57616 -30.64680 -27.80848 -26.27646 -25.67408 -24.89423 -24.34138 -22.36127 -21.21396 -20.41947 -18.92496 -17.07502 -16.94869 -16.34990 -15.96122 -15.68821 -15.18769 -14.94394 -14.71547 -14.33159 -14.17560 -13.57908 -13.17871 -13.06125 -12.80029 -12.75172 -12.60181 -12.49714 -12.28928 -12.05232 -11.90215 -11.84268 -11.60345 -11.01627 -10.99424 -10.93522 -10.60280 -10.15400 -10.08470 -9.88832 -9.75775 -9.39165 -9.05421 -8.94892 -8.49146 -8.38222 -6.10878 -4.07454 1.89990 2.32088 3.13782 3.31181 3.35329 3.39997 3.43571 4.12375 4.41909 4.51770 4.66348 4.75418 4.84567 4.97847 5.07091 5.21377 5.30378 5.36605 5.47250 5.50098 5.58090 5.74189 5.84667 5.84951 5.87969 5.97038 5.98209 6.14500 6.17836 6.46292 6.49705 6.57837 6.64734 6.71443 6.80574 7.06632 7.24019 7.43215 7.55483 7.68693 7.77976 8.38686 8.47561 8.91949 9.54101 11.02024 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.005518 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.856550 B = 5073.011224 C = 5430.278240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.152 3.848 4 N -0.630 5.630 5 C 0.699 3.301 6 O -0.535 6.535 7 N -0.567 5.567 8 C 0.138 3.862 9 C 0.026 3.974 10 C -0.135 4.135 11 C -0.137 4.137 12 C -0.511 4.511 13 H 0.077 0.923 14 C 0.078 3.922 15 N -0.891 5.891 16 Si 0.885 3.115 17 H -0.285 1.285 18 H -0.305 1.305 19 H -0.251 1.251 20 C 0.522 3.478 21 O -0.466 6.466 22 C 0.089 3.911 23 H 0.119 0.881 24 C -0.149 4.149 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.013 0.987 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.036 0.964 39 H 0.023 0.977 40 H 0.264 0.736 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.401 -5.757 -13.218 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.031 3.969 4 N -0.370 5.370 5 C 0.402 3.598 6 O -0.408 6.408 7 N -0.311 5.311 8 C 0.019 3.981 9 C 0.024 3.976 10 C -0.193 4.193 11 C -0.193 4.193 12 C -0.549 4.549 13 H 0.095 0.905 14 C -0.124 4.124 15 N -0.528 5.528 16 Si 0.718 3.282 17 H -0.213 1.213 18 H -0.234 1.234 19 H -0.177 1.177 20 C 0.308 3.692 21 O -0.335 6.335 22 C -0.019 4.019 23 H 0.136 0.864 24 C -0.207 4.207 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.948 -5.660 -12.739 21.945 hybrid contribution -0.456 0.939 0.005 1.044 sum -17.404 -4.721 -12.735 22.076 Atomic orbital electron populations 1.21681 0.94859 1.02078 1.02021 1.21973 0.96256 0.97197 1.02918 1.21319 0.74888 0.97108 1.03562 1.47787 1.05937 1.78061 1.05246 1.15920 0.81056 0.77583 0.85244 1.90963 1.76934 1.54315 1.18581 1.46642 1.08337 1.66780 1.09345 1.22014 0.85508 1.00664 0.89917 1.18840 0.94335 0.89987 0.94430 1.22257 0.98682 1.01108 0.97219 1.22273 0.97314 0.99483 1.00260 1.20648 1.15452 0.94729 1.24078 0.90519 1.24914 0.94116 0.98767 0.94623 1.69950 1.17363 1.27119 1.38367 0.87294 0.78778 0.82785 0.79366 1.21318 1.23423 1.17741 1.20696 0.90789 0.74982 0.82703 1.90785 1.30581 1.45873 1.66304 1.22076 0.88050 1.02263 0.89474 0.86365 1.21914 1.03223 0.95610 0.99957 0.92595 0.92379 0.92318 0.91751 0.91205 0.89415 0.89945 0.89252 0.89310 0.96770 0.92783 0.92926 0.92432 0.94554 0.95807 0.92588 0.89901 0.90818 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.59 16 2 C -0.14 -1.19 6.26 -26.73 -0.17 -1.36 16 3 C 0.15 1.42 6.02 -4.04 -0.02 1.39 16 4 N -0.63 -7.89 2.74 -172.40 -0.47 -8.36 16 5 C 0.70 11.93 6.74 -88.01 -0.59 11.34 16 6 O -0.53 -10.73 15.99 5.34 0.09 -10.65 16 7 N -0.57 -10.14 2.16 -120.73 -0.26 -10.40 16 8 C 0.14 2.85 4.66 -4.04 -0.02 2.83 16 9 C 0.03 0.61 0.57 -155.66 -0.09 0.52 16 10 C -0.14 -3.10 6.58 37.15 0.24 -2.86 16 11 C -0.14 -3.19 6.57 37.16 0.24 -2.95 16 12 C -0.51 -14.19 8.62 -34.44 -0.30 -14.49 16 13 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 14 C 0.08 2.26 5.32 -17.82 -0.09 2.17 16 15 N -0.89 -27.23 13.96 55.43 0.77 -26.46 16 16 Si 0.88 22.46 22.79 -169.99 -3.87 18.59 16 17 H -0.29 -7.25 7.10 56.52 0.40 -6.85 16 18 H -0.31 -7.80 7.11 56.52 0.40 -7.40 16 19 H -0.25 -6.01 4.65 56.52 0.26 -5.75 16 20 C 0.52 8.35 6.17 -10.56 -0.07 8.28 16 21 O -0.47 -8.53 16.69 5.60 0.09 -8.43 16 22 C 0.09 1.00 4.05 -68.20 -0.28 0.73 16 23 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 24 C -0.15 -1.38 9.39 37.16 0.35 -1.04 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.91 8.03 -51.93 -0.42 0.50 16 31 H 0.08 0.54 7.48 -51.93 -0.39 0.15 16 32 H 0.09 1.86 7.86 -51.93 -0.41 1.45 16 33 H 0.09 1.81 8.01 -51.92 -0.42 1.40 16 34 H 0.01 0.29 6.99 -51.93 -0.36 -0.08 16 35 H 0.05 1.30 4.31 -51.93 -0.22 1.08 16 36 H 0.05 1.21 7.71 -51.93 -0.40 0.81 16 37 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 38 H 0.04 0.88 2.26 -51.93 -0.12 0.76 16 39 H 0.02 0.51 6.18 -51.93 -0.32 0.19 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 42 H 0.07 0.48 7.60 -51.93 -0.39 0.09 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 329.97 15.07 4.97 4.97 Total: -1.00 -32.91 329.97 -6.04 -38.95 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.94 Total: -2.20 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -0.42 Total: 3.98 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.04 Total: -45.22 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.18 Total: -19.08 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -3.87 Total: 18.59 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.91 -6.04 -38.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420084343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.969 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds