Wall clock time and date at job start Tue Mar 31 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47367 * 2 1 4 4 N 1.46502 * 109.47405 * 179.97438 * 3 2 1 5 5 C 1.34528 * 126.68909 * 269.97611 * 4 3 2 6 6 O 1.21528 * 123.77610 * 0.02562 * 5 4 3 7 7 N 1.33800 * 112.45125 * 180.02562 * 5 4 3 8 8 C 1.46495 * 124.17255 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47370 * 269.96300 * 8 7 5 10 10 C 1.52992 * 109.47396 * 300.00236 * 9 8 7 11 11 C 1.53004 * 109.46877 * 60.00530 * 9 8 7 12 12 C 1.50700 * 109.47212 * 179.97438 * 9 8 7 13 13 H 1.07997 * 120.00485 * 1.20785 * 12 9 8 14 14 C 1.37878 * 119.99706 * 181.20072 * 12 9 8 15 15 N 1.31517 * 119.99731 * 194.17809 * 14 12 9 16 16 Si 1.86799 * 120.00267 * 14.18140 * 14 12 9 17 17 H 1.48494 * 109.47247 * 84.53574 * 16 14 12 18 18 H 1.48498 * 109.47038 * 204.53410 * 16 14 12 19 19 H 1.48500 * 109.47104 * 324.53251 * 16 14 12 20 20 C 1.34764 * 111.64710 * 0.02562 * 7 5 4 21 21 O 1.21229 * 127.15699 * 179.97438 * 20 7 5 22 22 C 1.47311 * 126.68656 * 89.99854 * 4 3 2 23 23 H 1.08998 * 110.60185 * 298.51099 * 22 4 3 24 24 C 1.53001 * 110.59662 * 61.45703 * 22 4 3 25 25 H 1.08998 * 109.47053 * 59.99764 * 1 2 3 26 26 H 1.08992 * 109.47259 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46650 * 299.99832 * 1 2 3 28 28 H 1.08996 * 109.47236 * 239.99746 * 2 1 3 29 29 H 1.09007 * 109.46854 * 120.00020 * 2 1 3 30 30 H 1.09004 * 109.46926 * 59.99953 * 3 2 1 31 31 H 1.08998 * 109.47226 * 300.00129 * 3 2 1 32 32 H 1.09004 * 109.47563 * 29.96523 * 8 7 5 33 33 H 1.09007 * 109.47086 * 149.96602 * 8 7 5 34 34 H 1.09006 * 109.47145 * 69.50527 * 10 9 8 35 35 H 1.09004 * 109.47850 * 189.50411 * 10 9 8 36 36 H 1.08999 * 109.47153 * 309.50593 * 10 9 8 37 37 H 1.08997 * 109.47656 * 59.99716 * 11 9 8 38 38 H 1.09000 * 109.47070 * 179.97438 * 11 9 8 39 39 H 1.09006 * 109.46760 * 299.99793 * 11 9 8 40 40 H 0.97006 * 119.99866 * 180.02562 * 15 14 12 41 41 H 1.09009 * 109.46643 * 175.62702 * 24 22 4 42 42 H 1.08996 * 109.46964 * 295.62279 * 24 22 4 43 43 H 1.09002 * 109.47190 * 55.62800 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.3084 1.4431 1.0797 6 8 3.9016 1.4433 2.2249 7 7 5.6055 1.4435 0.7512 8 6 6.7007 1.4436 1.7241 9 6 7.0823 2.8862 2.0623 10 6 7.5307 3.6070 0.7895 11 6 5.8715 3.6078 2.6575 12 6 8.2086 2.8863 3.0636 13 1 8.6250 1.9513 3.4081 14 6 8.7075 4.0802 3.5398 15 7 9.8530 4.1033 4.1854 16 14 7.7564 5.6647 3.2679 17 1 6.7352 5.8184 4.3350 18 1 8.6922 6.8170 3.3088 19 1 7.0857 5.6186 1.9438 20 6 5.7798 1.4437 -0.5851 21 8 6.8326 1.4445 -1.1862 22 6 4.3857 1.4423 -1.1803 23 1 4.2246 0.5456 -1.7787 24 6 4.1588 2.7003 -2.0211 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 6.3813 0.9301 2.6310 33 1 7.5634 0.9295 1.3001 34 1 6.6721 3.7563 0.1348 35 1 7.9602 4.5739 1.0515 36 1 8.2793 3.0043 0.2752 37 1 5.5520 3.0943 3.5643 38 1 6.1434 4.6353 2.8989 39 1 5.0565 3.6077 1.9336 40 1 10.2038 4.9432 4.5208 41 1 4.8717 2.7196 -2.8456 42 1 3.1439 2.6935 -2.4184 43 1 4.2995 3.5838 -1.3984 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420084343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:28 Heat of formation + Delta-G solvation = -53.923236 kcal Electronic energy + Delta-G solvation = -24159.657251 eV Core-core repulsion = 20819.651755 eV Total energy + Delta-G solvation = -3340.005497 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.49482 -39.67766 -38.70490 -37.37518 -36.26448 -34.52570 -33.55928 -31.50223 -29.08194 -28.16266 -27.19448 -26.54885 -25.54581 -23.24259 -22.32746 -21.67306 -20.54643 -18.46820 -18.30055 -18.04673 -17.49279 -16.98561 -16.74376 -16.14702 -15.60891 -15.49053 -15.39302 -15.07592 -14.75908 -14.72394 -14.44856 -14.09858 -13.84014 -13.76092 -13.32405 -13.21371 -12.93956 -12.79348 -12.73251 -12.60696 -12.48670 -12.21600 -12.04440 -11.81567 -11.77807 -11.52949 -11.19547 -11.03428 -11.01102 -10.64448 -10.30264 -9.91824 -8.35744 -6.35573 0.66599 1.15040 1.28408 1.30960 1.41381 1.99592 2.08329 2.28166 2.99844 3.02387 3.66034 3.91490 4.01857 4.04006 4.08596 4.15301 4.26219 4.36098 4.43310 4.48662 4.62590 4.64847 4.68609 4.73655 4.76254 4.79981 4.80650 4.88110 4.94732 5.04745 5.15932 5.19128 5.24105 5.32594 5.33353 5.40481 5.57750 5.62245 5.68989 6.21930 6.23573 6.44317 6.66574 7.10633 7.28803 8.80818 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.005518 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.856550 B = 5073.011224 C = 5430.278240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.146 3.854 4 N -0.615 5.615 5 C 0.691 3.309 6 O -0.575 6.575 7 N -0.577 5.577 8 C 0.148 3.852 9 C 0.023 3.977 10 C -0.124 4.124 11 C -0.126 4.126 12 C -0.513 4.513 13 H 0.042 0.958 14 C 0.027 3.973 15 N -0.937 5.937 16 Si 0.937 3.063 17 H -0.284 1.284 18 H -0.306 1.306 19 H -0.225 1.225 20 C 0.512 3.488 21 O -0.494 6.494 22 C 0.101 3.899 23 H 0.160 0.840 24 C -0.145 4.145 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.030 0.970 39 H 0.041 0.959 40 H 0.266 0.734 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.493 -5.208 -16.373 26.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.026 3.974 4 N -0.353 5.353 5 C 0.394 3.606 6 O -0.451 6.451 7 N -0.321 5.321 8 C 0.027 3.973 9 C 0.021 3.979 10 C -0.182 4.182 11 C -0.183 4.183 12 C -0.551 4.551 13 H 0.060 0.940 14 C -0.171 4.171 15 N -0.576 5.576 16 Si 0.767 3.233 17 H -0.212 1.212 18 H -0.235 1.235 19 H -0.149 1.149 20 C 0.301 3.699 21 O -0.365 6.365 22 C -0.005 4.005 23 H 0.177 0.823 24 C -0.203 4.203 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.142 0.858 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.131 0.869 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.096 -5.124 -15.958 26.168 hybrid contribution 0.515 0.638 0.976 1.275 sum -19.581 -4.486 -14.982 25.060 Atomic orbital electron populations 1.21659 0.93353 1.02553 1.02705 1.21918 0.97468 0.96229 1.02193 1.21687 0.72625 0.98140 1.04914 1.47984 1.06930 1.76228 1.04181 1.16125 0.81041 0.77664 0.85787 1.90936 1.77403 1.56327 1.20428 1.46625 1.08188 1.67404 1.09855 1.21540 0.86646 0.98509 0.90593 1.18799 0.93149 0.92196 0.93759 1.22092 0.99204 1.00045 0.96833 1.22129 0.97419 0.98595 1.00134 1.20917 1.16281 0.93370 1.24549 0.93951 1.25661 0.94743 1.02120 0.94610 1.70071 1.19169 1.28085 1.40285 0.86424 0.77593 0.78736 0.80554 1.21154 1.23468 1.14945 1.21584 0.92636 0.73781 0.81875 1.90772 1.32259 1.46980 1.66512 1.22314 0.83965 1.05345 0.88893 0.82326 1.21977 1.05894 0.93133 0.99262 0.90540 0.92079 0.93000 0.90225 0.94200 0.90811 0.85798 0.90361 0.89839 0.94600 0.93856 0.93636 0.93741 0.95129 0.94017 0.92482 0.89126 0.86895 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.91 71.98 0.71 -0.69 16 2 C -0.14 -1.86 6.26 30.59 0.19 -1.67 16 3 C 0.15 2.16 6.02 86.38 0.52 2.68 16 4 N -0.61 -13.40 2.74 -817.78 -2.24 -15.64 16 5 C 0.69 22.70 6.74 179.44 1.21 23.91 16 6 O -0.57 -23.04 15.99 -3.81 -0.06 -23.10 16 7 N -0.58 -20.12 2.16 -773.12 -1.67 -21.78 16 8 C 0.15 6.24 4.66 86.38 0.40 6.64 16 9 C 0.02 1.07 0.57 -52.93 -0.03 1.04 16 10 C -0.12 -5.58 6.58 71.98 0.47 -5.11 16 11 C -0.13 -5.79 6.57 71.98 0.47 -5.32 16 12 C -0.51 -29.43 8.62 25.60 0.22 -29.21 16 13 H 0.04 2.65 7.99 -2.91 -0.02 2.63 16 14 C 0.03 1.60 5.32 84.65 0.45 2.05 16 15 N -0.94 -59.08 13.96 21.45 0.30 -58.78 16 16 Si 0.94 46.28 22.79 68.60 1.56 47.85 16 17 H -0.28 -13.91 7.10 99.48 0.71 -13.20 16 18 H -0.31 -15.06 7.11 99.48 0.71 -14.36 16 19 H -0.22 -10.10 4.65 99.48 0.46 -9.63 16 20 C 0.51 15.32 6.17 87.94 0.54 15.86 16 21 O -0.49 -17.36 16.69 -2.87 -0.05 -17.41 16 22 C 0.10 1.85 4.05 44.37 0.18 2.03 16 23 H 0.16 1.80 8.14 -2.39 -0.02 1.78 16 24 C -0.14 -1.95 9.39 71.98 0.68 -1.27 16 25 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.07 1.35 8.03 -2.38 -0.02 1.34 16 31 H 0.12 0.87 7.48 -2.39 -0.02 0.85 16 32 H 0.08 3.41 7.86 -2.38 -0.02 3.39 16 33 H 0.08 3.53 8.01 -2.38 -0.02 3.52 16 34 H 0.04 1.42 6.99 -2.38 -0.02 1.41 16 35 H 0.04 2.01 4.31 -2.39 -0.01 2.00 16 36 H 0.04 2.08 7.71 -2.39 -0.02 2.06 16 37 H 0.04 2.13 8.10 -2.39 -0.02 2.11 16 38 H 0.03 1.43 2.26 -2.39 -0.01 1.43 16 39 H 0.04 1.74 6.18 -2.38 -0.01 1.73 16 40 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 41 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.11 0.70 7.60 -2.39 -0.02 0.68 16 43 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -74.67 329.97 4.62 -70.05 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.75 Total: 7.86 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 6.02 Total: 10.95 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -3.61 Total: -96.20 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -0.11 Total: -40.50 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.56 Total: 47.85 kcal Total: -74.67 4.62 -70.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420084343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.129 kcal (2) G-P(sol) polarization free energy of solvation -74.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds