Wall clock time and date at job start Tue Mar 31 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46874 * 2 1 4 4 N 1.46495 * 109.47039 * 180.02562 * 3 2 1 5 5 C 1.34537 * 126.68810 * 270.22550 * 4 3 2 6 6 O 1.21534 * 123.77063 * 0.02562 * 5 4 3 7 7 N 1.33798 * 112.45462 * 180.19822 * 5 4 3 8 8 C 1.46498 * 124.17515 * 179.86406 * 7 5 4 9 9 C 1.53006 * 109.46958 * 269.69374 * 8 7 5 10 10 C 1.53005 * 109.46886 * 60.00206 * 9 8 7 11 11 C 1.52992 * 109.47143 * 300.00462 * 9 8 7 12 12 C 1.50695 * 109.46955 * 180.02562 * 9 8 7 13 13 H 1.08001 * 120.00374 * 357.22008 * 12 9 8 14 14 C 1.37881 * 119.99708 * 177.22601 * 12 9 8 15 15 N 1.31510 * 120.00441 * 4.85393 * 14 12 9 16 16 Si 1.86805 * 119.99840 * 184.86012 * 14 12 9 17 17 H 1.48503 * 109.47050 * 265.05947 * 16 14 12 18 18 H 1.48494 * 109.47094 * 145.06173 * 16 14 12 19 19 H 1.48501 * 109.47247 * 25.05769 * 16 14 12 20 20 C 1.34764 * 111.64414 * 359.59080 * 7 5 4 21 21 O 1.21234 * 127.15838 * 180.26656 * 20 7 5 22 22 C 1.47309 * 126.69188 * 90.00077 * 4 3 2 23 23 H 1.08996 * 110.59746 * 61.43862 * 22 4 3 24 24 C 1.52998 * 110.73006 * 298.55309 * 22 4 3 25 25 H 1.08996 * 109.46981 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47055 * 300.00086 * 1 2 3 27 27 H 1.08998 * 109.47085 * 60.00139 * 1 2 3 28 28 H 1.08995 * 109.47347 * 240.00183 * 2 1 3 29 29 H 1.08998 * 109.47085 * 119.99861 * 2 1 3 30 30 H 1.09008 * 109.46973 * 60.00181 * 3 2 1 31 31 H 1.08998 * 109.47152 * 299.99820 * 3 2 1 32 32 H 1.08993 * 109.46886 * 149.69593 * 8 7 5 33 33 H 1.08998 * 109.47011 * 29.69475 * 8 7 5 34 34 H 1.09000 * 109.46810 * 174.00664 * 10 9 8 35 35 H 1.08999 * 109.47030 * 294.00812 * 10 9 8 36 36 H 1.08998 * 109.47195 * 54.00949 * 10 9 8 37 37 H 1.09006 * 109.47229 * 299.99761 * 11 9 8 38 38 H 1.08999 * 109.47614 * 59.99966 * 11 9 8 39 39 H 1.09001 * 109.47431 * 180.02562 * 11 9 8 40 40 H 0.96995 * 120.00537 * 179.97438 * 15 14 12 41 41 H 1.09005 * 109.46893 * 304.30000 * 24 22 4 42 42 H 1.09000 * 109.46898 * 64.29421 * 24 22 4 43 43 H 1.09001 * 109.47431 * 184.29816 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3092 1.4382 1.0779 6 8 3.9032 1.4331 2.2234 7 7 5.6060 1.4439 0.7484 8 6 6.7021 1.4438 1.7204 9 6 7.0838 2.8864 2.0586 10 6 5.8734 3.6078 2.6548 11 6 7.5311 3.6074 0.7855 12 6 8.2117 2.8863 3.0580 13 1 8.5858 1.9521 3.4501 14 6 8.7661 4.0790 3.4718 15 7 8.2493 5.2193 3.0689 16 14 10.2513 4.0753 4.6048 17 1 9.7995 4.2032 6.0136 18 1 11.1371 5.2172 4.2635 19 1 10.9979 2.8025 4.4381 20 6 5.7793 1.4436 -0.5881 21 8 6.8316 1.4435 -1.1900 22 6 4.3847 1.4428 -1.1822 23 1 4.2224 2.3390 -1.7809 24 6 4.1595 0.1860 -2.0252 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8901 31 1 1.6767 1.9563 -0.8900 32 1 7.5642 0.9298 1.2957 33 1 6.3833 0.9302 2.6274 34 1 6.1723 4.5999 2.9934 35 1 5.0964 3.7016 1.8962 36 1 5.4894 3.0360 3.4995 37 1 8.3934 3.0934 0.3607 38 1 6.7156 3.6074 0.0623 39 1 7.8035 4.6349 1.0264 40 1 8.6390 6.0583 3.3604 41 1 4.3022 -0.6984 -1.4042 42 1 3.1442 0.1916 -2.4217 43 1 4.8717 0.1695 -2.8502 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420084344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:32 Heat of formation + Delta-G solvation = -51.097660 kcal Electronic energy + Delta-G solvation = -24000.200092 eV Core-core repulsion = 20660.317122 eV Total energy + Delta-G solvation = -3339.882970 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.07846 -38.22141 -36.97015 -35.74414 -34.89556 -33.16862 -31.02852 -30.67074 -27.42169 -25.66144 -25.44918 -24.91468 -24.25081 -21.99891 -21.30391 -20.23834 -18.66300 -17.01883 -16.74363 -16.06876 -15.85494 -15.54853 -14.84063 -14.72033 -14.47833 -14.23717 -14.05063 -13.42367 -13.22576 -12.87447 -12.66611 -12.62457 -12.32002 -12.14234 -12.06090 -11.93181 -11.45115 -11.23277 -11.10061 -10.91620 -10.71980 -10.63504 -10.35631 -10.26605 -10.13774 -9.99040 -9.63307 -9.41338 -8.90604 -8.75772 -8.57246 -8.27851 -5.94338 -4.05380 2.04987 2.46209 3.27988 3.32301 3.39433 3.43362 3.51541 4.25025 4.44990 4.63046 4.71719 4.85129 4.94463 5.06841 5.16576 5.31404 5.38538 5.44355 5.47211 5.60015 5.69658 5.80028 5.86129 5.96583 6.08300 6.16100 6.29978 6.33328 6.49698 6.69945 6.88370 7.01238 7.13473 7.19814 7.51924 7.61599 7.71101 7.76213 7.83338 8.14613 8.20811 8.46194 8.56314 8.94127 9.59325 11.06524 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028533 B = 0.004869 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.084218 B = 5749.183435 C = 6267.950786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.154 3.846 4 N -0.631 5.631 5 C 0.701 3.299 6 O -0.536 6.536 7 N -0.562 5.562 8 C 0.128 3.872 9 C 0.054 3.946 10 C -0.121 4.121 11 C -0.122 4.122 12 C -0.506 4.506 13 H 0.057 0.943 14 C 0.067 3.933 15 N -0.883 5.883 16 Si 0.893 3.107 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.524 3.476 21 O -0.469 6.469 22 C 0.088 3.912 23 H 0.119 0.881 24 C -0.146 4.146 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.082 0.918 35 H -0.001 1.001 36 H 0.030 0.970 37 H 0.029 0.971 38 H -0.001 1.001 39 H 0.082 0.918 40 H 0.259 0.741 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.331 -8.415 -10.302 18.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C 0.032 3.968 4 N -0.371 5.371 5 C 0.404 3.596 6 O -0.409 6.409 7 N -0.306 5.306 8 C 0.009 3.991 9 C 0.053 3.947 10 C -0.178 4.178 11 C -0.180 4.180 12 C -0.544 4.544 13 H 0.075 0.925 14 C -0.134 4.134 15 N -0.521 5.521 16 Si 0.721 3.279 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.199 1.199 20 C 0.310 3.690 21 O -0.339 6.339 22 C -0.020 4.020 23 H 0.136 0.864 24 C -0.205 4.205 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.018 0.982 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.018 0.982 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.992 -8.210 -9.900 18.281 hybrid contribution 0.786 0.132 0.579 0.986 sum -12.206 -8.078 -9.320 17.352 Atomic orbital electron populations 1.21687 0.94989 1.01969 1.02007 1.22061 0.96154 0.97334 1.03011 1.21289 0.74983 0.97004 1.03483 1.47756 1.05857 1.78215 1.05244 1.15905 0.81074 0.77492 0.85177 1.90949 1.76995 1.54329 1.18590 1.46576 1.08280 1.66477 1.09244 1.22236 0.85067 1.02428 0.89413 1.18477 0.94409 0.87764 0.94065 1.21756 0.95028 1.03438 0.97615 1.21757 0.97029 1.03970 0.95248 1.20931 1.16472 0.92795 1.24241 0.92469 1.24875 0.96978 0.95490 0.96090 1.69836 1.40117 0.97199 1.44981 0.86567 0.82843 0.77682 0.80818 1.20814 1.21226 1.19856 1.20636 0.90677 0.74948 0.82762 1.90774 1.30676 1.46146 1.66308 1.22081 0.88247 1.02175 0.89466 0.86364 1.21953 1.03217 0.95510 0.99777 0.92469 0.92357 0.92610 0.91497 0.91296 0.89434 0.90060 0.90210 0.90055 0.89960 0.98191 0.95093 0.95170 0.98210 0.89959 0.93061 0.91676 0.90776 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.15 -1.31 6.14 -26.73 -0.16 -1.47 16 3 C 0.15 1.58 5.99 -4.04 -0.02 1.56 16 4 N -0.63 -8.67 2.75 -172.40 -0.47 -9.14 16 5 C 0.70 12.95 6.84 -88.00 -0.60 12.35 16 6 O -0.54 -11.52 15.90 5.34 0.08 -11.44 16 7 N -0.56 -10.88 2.14 -120.72 -0.26 -11.14 16 8 C 0.13 2.81 4.67 -4.04 -0.02 2.79 16 9 C 0.05 1.35 0.57 -155.66 -0.09 1.26 16 10 C -0.12 -3.10 7.07 37.16 0.26 -2.83 16 11 C -0.12 -3.08 7.23 37.15 0.27 -2.81 16 12 C -0.51 -13.76 8.01 -34.44 -0.28 -14.04 16 13 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 14 C 0.07 1.84 5.12 -17.82 -0.09 1.74 16 15 N -0.88 -24.79 9.35 55.43 0.52 -24.27 16 16 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.52 9.12 5.99 -10.55 -0.06 9.05 16 21 O -0.47 -9.25 16.87 5.60 0.09 -9.16 16 22 C 0.09 1.10 4.04 -68.20 -0.28 0.82 16 23 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 24 C -0.15 -1.34 8.59 37.16 0.32 -1.02 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.53 6.45 -51.93 -0.34 0.20 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 1.01 8.04 -51.92 -0.42 0.59 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.72 8.00 -51.93 -0.42 1.30 16 33 H 0.08 1.79 7.85 -51.93 -0.41 1.39 16 34 H 0.08 2.30 5.99 -51.93 -0.31 1.99 16 35 H 0.00 -0.02 6.72 -51.93 -0.35 -0.37 16 36 H 0.03 0.80 7.81 -51.93 -0.41 0.39 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.00 -0.03 6.19 -51.93 -0.32 -0.35 16 39 H 0.08 2.26 6.04 -51.93 -0.31 1.95 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.50 7.32 -51.93 -0.38 0.12 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 337.79 15.07 5.09 5.09 Total: -1.00 -31.44 337.79 -7.35 -38.79 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -7.00 Total: -1.72 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -0.38 Total: 6.73 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.21 Total: -44.55 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: 0.18 Total: -20.60 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.44 -7.35 -38.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420084344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.306 kcal (2) G-P(sol) polarization free energy of solvation -31.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds