Wall clock time and date at job start Tue Mar 31 2020 05:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47161 * 239.99614 * 2 1 3 5 5 H 1.07999 * 120.00196 * 240.00130 * 4 2 1 6 6 C 1.37884 * 119.99751 * 60.00265 * 4 2 1 7 7 N 1.31514 * 119.99981 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99783 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46970 * 60.00291 * 8 6 4 10 10 H 1.48503 * 109.46851 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47412 * 300.00257 * 8 6 4 12 12 C 1.52999 * 109.47283 * 120.00159 * 2 1 3 13 13 N 1.46506 * 109.47082 * 300.00093 * 12 2 1 14 14 C 1.34777 * 120.00271 * 180.02562 * 13 12 2 15 15 O 1.21351 * 119.99897 * 359.97438 * 14 13 12 16 16 C 1.49446 * 119.99877 * 179.97438 * 14 13 12 17 17 O 1.21351 * 120.00227 * 359.97438 * 16 14 13 18 18 N 1.34777 * 119.99872 * 179.97438 * 16 14 13 19 19 C 1.46506 * 119.99873 * 179.97438 * 18 16 14 20 20 C 1.54268 * 110.03351 * 272.90833 * 19 18 16 21 21 C 1.54960 * 104.16081 * 217.13577 * 20 19 18 22 22 C 1.54894 * 102.77798 * 37.89146 * 21 20 19 23 23 C 1.53876 * 110.02735 * 155.69309 * 19 18 16 24 24 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 26 26 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47289 * 299.99700 * 3 2 1 29 29 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 30 30 H 0.96991 * 120.00232 * 180.02562 * 7 6 4 31 31 H 1.08993 * 109.47839 * 179.97438 * 12 2 1 32 32 H 1.09000 * 109.47160 * 59.99549 * 12 2 1 33 33 H 0.96999 * 119.99685 * 359.97438 * 13 12 2 34 34 H 0.96995 * 120.00018 * 0.27608 * 18 16 14 35 35 H 1.08996 * 110.01518 * 34.30257 * 19 18 16 36 36 H 1.09004 * 110.48628 * 335.78894 * 20 19 18 37 37 H 1.09007 * 110.48293 * 98.42755 * 20 19 18 38 38 H 1.08999 * 110.72063 * 279.58023 * 21 20 19 39 39 H 1.09000 * 110.91947 * 156.29644 * 21 20 19 40 40 H 1.09000 * 110.48739 * 203.40857 * 22 21 20 41 41 H 1.09000 * 110.59948 * 80.80998 * 22 21 20 42 42 H 1.08997 * 110.03107 * 238.56635 * 23 19 18 43 43 H 1.08992 * 110.03504 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1197 -4.0080 9 1 1.8279 -2.5200 -4.0081 10 1 1.8269 -0.4201 -5.2205 11 1 3.8074 -1.1192 -4.0077 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4908 3.6696 15 8 2.5753 -1.4774 3.7809 16 6 1.3799 0.2140 4.8897 17 8 0.6826 1.2009 4.7784 18 7 1.7055 -0.2464 6.1139 19 6 1.2180 0.4449 7.3100 20 6 2.1900 1.5781 7.6985 21 6 2.1938 1.5597 9.2480 22 6 2.1263 0.0467 9.5729 23 6 1.1771 -0.5283 8.5013 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7089 1.1613 -3.4844 31 1 3.1299 -0.7217 1.2491 32 1 1.6766 -1.7489 1.2492 33 1 0.9942 0.7582 2.3564 34 1 2.2661 -1.0329 6.2029 35 1 0.2239 0.8523 7.1264 36 1 3.1885 1.3733 7.3122 37 1 1.8259 2.5366 7.3284 38 1 1.3200 2.0787 9.6420 39 1 3.1113 1.9985 9.6402 40 1 1.7160 -0.1114 10.5703 41 1 3.1138 -0.4075 9.4910 42 1 0.1633 -0.5925 8.8963 43 1 1.5204 -1.5147 8.1895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420619528.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:54 Heat of formation + Delta-G solvation = -92.054873 kcal Electronic energy + Delta-G solvation = -22416.837293 eV Core-core repulsion = 19075.178285 eV Total energy + Delta-G solvation = -3341.659008 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.51859 -38.87209 -37.61558 -36.46599 -34.00742 -33.13365 -30.88621 -29.05232 -28.26936 -26.11855 -25.72036 -25.23486 -23.29673 -21.04295 -20.57125 -20.20759 -18.98339 -18.14035 -16.93026 -16.06774 -15.74455 -15.58560 -15.56087 -14.81772 -14.69779 -14.33091 -13.86425 -13.68710 -13.46052 -12.92975 -12.74884 -12.33925 -12.21329 -11.84761 -11.49519 -11.45993 -11.39415 -11.36356 -11.17912 -11.02824 -10.95147 -10.86175 -10.74088 -10.39525 -10.20096 -9.64968 -9.53503 -9.27523 -9.20053 -8.80871 -8.59424 -8.36784 -6.02488 -4.13446 1.67573 2.61298 3.29736 3.34396 3.37466 3.48775 3.93947 4.22813 4.31171 4.39377 4.57998 4.82915 5.07839 5.14089 5.19303 5.22562 5.24002 5.32858 5.48323 5.58379 5.72880 5.83670 5.91527 6.00072 6.11830 6.23766 6.30773 6.47275 6.63813 6.83225 6.85379 6.94430 7.00567 7.14575 7.33649 7.55299 7.67545 7.73929 7.99398 8.00241 8.13159 8.33146 8.41968 8.86596 9.52396 10.98926 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046550 B = 0.003029 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.361331 B = 9242.719547 C = 9465.822937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.057 3.943 3 C -0.134 4.134 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.128 3.872 13 N -0.680 5.680 14 C 0.495 3.505 15 O -0.537 6.537 16 C 0.508 3.492 17 O -0.521 6.521 18 N -0.701 5.701 19 C 0.137 3.863 20 C -0.137 4.137 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.132 4.132 24 H 0.008 0.992 25 H 0.087 0.913 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.087 0.913 29 H 0.008 0.992 30 H 0.261 0.739 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.411 0.589 34 H 0.411 0.589 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 0.336 20.860 20.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.056 3.944 3 C -0.191 4.191 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.006 3.994 13 N -0.332 5.332 14 C 0.274 3.726 15 O -0.415 6.415 16 C 0.289 3.711 17 O -0.396 6.396 18 N -0.355 5.355 19 C 0.033 3.967 20 C -0.176 4.176 21 C -0.162 4.162 22 C -0.162 4.162 23 C -0.170 4.170 24 H 0.027 0.973 25 H 0.106 0.894 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.106 0.894 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.248 0.752 34 H 0.248 0.752 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.502 0.464 20.659 20.671 hybrid contribution 0.333 -0.472 -0.876 1.050 sum 0.835 -0.008 19.783 19.800 Atomic orbital electron populations 1.21857 0.97604 0.99290 1.00396 1.18369 0.92961 0.92847 0.90241 1.21859 0.98613 0.98269 1.00396 1.20921 1.31771 1.12207 0.89807 0.92402 1.24883 0.94815 0.94903 0.98862 1.69795 1.36450 1.22627 1.23417 0.86613 0.79212 0.79759 0.82142 1.20277 1.21313 1.20273 1.21942 0.98537 0.96038 0.82892 1.46226 1.50397 1.31378 1.05174 1.20002 0.82384 0.85228 0.84979 1.90719 1.37985 1.25996 1.86804 1.20505 0.80871 0.84649 0.85105 1.90746 1.36622 1.25365 1.86852 1.45978 1.52697 1.32145 1.04663 1.21762 0.98913 0.92486 0.83530 1.22836 0.99983 0.98964 0.95781 1.22486 1.02086 0.96276 0.95313 1.22365 0.99662 0.95773 0.98405 1.22452 1.00907 0.98850 0.94825 0.97263 0.89436 0.95343 0.95354 0.89426 0.97273 0.92871 0.92020 0.92020 0.75192 0.75224 0.88767 0.90912 0.90788 0.91219 0.91264 0.91353 0.91341 0.90509 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.08 37.15 0.30 -2.78 16 2 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -3.08 8.08 37.16 0.30 -2.78 16 4 C -0.51 -13.24 8.01 -34.43 -0.28 -13.52 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.88 -23.67 9.35 55.43 0.52 -23.15 16 8 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.13 2.69 4.50 -4.04 -0.02 2.68 16 13 N -0.68 -12.78 4.95 -60.73 -0.30 -13.08 16 14 C 0.49 8.77 7.89 -11.59 -0.09 8.68 16 15 O -0.54 -10.34 16.48 5.50 0.09 -10.25 16 16 C 0.51 7.86 7.88 -11.59 -0.09 7.76 16 17 O -0.52 -9.06 16.14 5.50 0.09 -8.97 16 18 N -0.70 -8.33 5.03 -53.15 -0.27 -8.60 16 19 C 0.14 1.35 3.23 -66.81 -0.22 1.13 16 20 C -0.14 -1.25 6.54 -25.03 -0.16 -1.42 16 21 C -0.12 -0.85 6.91 -24.70 -0.17 -1.02 16 22 C -0.12 -0.78 6.83 -25.07 -0.17 -0.95 16 23 C -0.13 -0.95 6.57 -25.61 -0.17 -1.12 16 24 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 25 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 29 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.41 7.61 5.63 -40.82 -0.23 7.38 16 34 H 0.41 4.42 7.78 -40.82 -0.32 4.11 16 35 H 0.09 1.04 7.59 -51.93 -0.39 0.64 16 36 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 37 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.51 7.61 -51.93 -0.40 0.12 16 LS Contribution 342.99 15.07 5.17 5.17 Total: -1.00 -28.24 342.99 -7.53 -35.76 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.87 Total: 7.92 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -0.94 Total: -0.41 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -0.05 Total: -44.83 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.18 Total: -19.22 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.24 -7.53 -35.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420619528.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.293 kcal (2) G-P(sol) polarization free energy of solvation -28.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds