Wall clock time and date at job start Tue Mar 31 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47745 * 2 1 4 4 C 1.50707 * 109.46768 * 120.00346 * 2 1 3 5 5 O 1.21282 * 119.99870 * 354.03523 * 4 2 1 6 6 N 1.34772 * 119.99900 * 174.04699 * 4 2 1 7 7 C 1.46935 * 120.63387 * 6.12292 * 6 4 2 8 8 C 1.53188 * 108.77622 * 233.63749 * 7 6 4 9 9 C 1.53041 * 109.31242 * 305.35846 * 8 7 6 10 10 C 1.53047 * 109.53260 * 61.36988 * 9 8 7 11 11 C 1.46924 * 120.63142 * 186.15413 * 6 4 2 12 12 H 1.09005 * 109.70514 * 246.22134 * 11 6 4 13 13 C 1.50700 * 109.58621 * 6.57448 * 11 6 4 14 14 O 1.21280 * 119.99668 * 61.11925 * 13 11 6 15 15 N 1.34779 * 119.99791 * 241.11660 * 13 11 6 16 16 C 1.46498 * 119.99378 * 180.02562 * 15 13 11 17 17 C 1.50702 * 109.46964 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99828 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00182 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00074 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00243 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47536 * 270.00820 * 21 19 17 23 23 H 1.48504 * 109.47072 * 150.00323 * 21 19 17 24 24 H 1.48509 * 109.46719 * 30.00856 * 21 19 17 25 25 H 1.08994 * 109.46842 * 300.00307 * 1 2 3 26 26 H 1.09000 * 109.46999 * 59.99977 * 1 2 3 27 27 H 1.09001 * 109.47314 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46834 * 239.99385 * 2 1 3 29 29 H 1.08994 * 109.47479 * 174.33731 * 3 2 1 30 30 H 1.09004 * 109.46873 * 294.34139 * 3 2 1 31 31 H 1.09009 * 109.46805 * 54.33093 * 3 2 1 32 32 H 1.09002 * 109.58507 * 113.84284 * 7 6 4 33 33 H 1.08999 * 109.58230 * 353.42396 * 7 6 4 34 34 H 1.09004 * 109.49271 * 185.41418 * 8 7 6 35 35 H 1.09000 * 109.52810 * 65.33219 * 8 7 6 36 36 H 1.08994 * 109.46013 * 301.35117 * 9 8 7 37 37 H 1.08998 * 109.46029 * 181.38944 * 9 8 7 38 38 H 1.09006 * 109.49088 * 178.67778 * 10 9 8 39 39 H 1.09004 * 109.52086 * 58.60439 * 10 9 8 40 40 H 0.96996 * 120.00398 * 0.02562 * 15 13 11 41 41 H 1.08995 * 109.47705 * 60.00039 * 16 15 13 42 42 H 1.09002 * 109.47386 * 299.99485 * 16 15 13 43 43 H 0.97003 * 119.99688 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 1.2494 -1.0760 2.0817 6 7 3.3514 -0.9396 1.3851 7 6 4.3239 -0.3873 0.4321 8 6 5.2003 -1.5280 -0.0948 9 6 5.8297 -2.2698 1.0866 10 6 4.7260 -2.8722 1.9593 11 6 3.8443 -1.7468 2.5094 12 1 4.4292 -1.1205 3.1830 13 6 2.6769 -2.3389 3.2562 14 8 1.9144 -3.0932 2.6900 15 7 2.4803 -2.0302 4.5534 16 6 1.3458 -2.6063 5.2795 17 6 1.3523 -2.1051 6.7007 18 1 2.1245 -1.4258 7.0302 19 6 0.3723 -2.5138 7.5803 20 7 -0.5678 -3.3414 7.1793 21 14 0.3808 -1.8931 9.3422 22 1 1.1778 -2.8169 10.1887 23 1 -1.0126 -1.8322 9.8522 24 1 0.9838 -0.5367 9.3862 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1254 1.4440 0.1014 30 1 1.7619 1.9262 -0.9364 31 1 1.5963 1.9847 0.8350 32 1 4.9485 0.3515 0.9343 33 1 3.7960 0.0814 -0.3983 34 1 5.9872 -1.1191 -0.7285 35 1 4.5887 -2.2194 -0.6745 36 1 6.4215 -1.5726 1.6795 37 1 6.4733 -3.0666 0.7138 38 1 5.1756 -3.4202 2.7874 39 1 4.1184 -3.5511 1.3610 40 1 3.0899 -1.4268 5.0061 41 1 1.4267 -3.6932 5.2768 42 1 0.4157 -2.3100 4.7944 43 1 -0.5719 -3.6640 6.2644 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427633390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:10 Heat of formation + Delta-G solvation = -80.049366 kcal Electronic energy + Delta-G solvation = -23710.325900 eV Core-core repulsion = 20369.187489 eV Total energy + Delta-G solvation = -3341.138411 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.80520 -38.16210 -37.29590 -34.66173 -34.09776 -32.76174 -32.26472 -31.24511 -27.25922 -27.02269 -25.71976 -23.84843 -23.25262 -22.24786 -20.47264 -19.94436 -18.77483 -17.59510 -16.79072 -16.11235 -15.81098 -15.35553 -14.90125 -14.49389 -14.30781 -14.12155 -13.90732 -13.70442 -13.64177 -13.09172 -12.89821 -12.54995 -12.39594 -12.28816 -12.05258 -11.97492 -11.58432 -11.52834 -11.32254 -11.12396 -11.08771 -10.96215 -10.86547 -10.70333 -10.67908 -10.11332 -9.19118 -8.89408 -8.63672 -8.58488 -8.49370 -7.72668 -6.39979 -4.11477 2.77373 2.88563 3.42575 3.47252 3.62688 3.79754 4.03600 4.49510 4.55265 4.56590 4.65665 4.78088 4.81496 4.90274 5.00637 5.10635 5.20855 5.26118 5.35393 5.39216 5.48118 5.54212 5.58765 5.61936 5.69430 5.71894 5.80627 5.84279 5.89702 5.92504 6.08395 6.23228 6.32236 6.51869 7.21844 7.45616 7.47175 7.59197 7.83460 8.39994 8.43609 8.66137 8.87997 9.29882 9.62946 11.00387 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019503 B = 0.004828 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.365830 B = 5798.574452 C = 6597.777866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.108 4.108 3 C -0.154 4.154 4 C 0.504 3.496 5 O -0.481 6.481 6 N -0.607 5.607 7 C 0.103 3.897 8 C -0.138 4.138 9 C -0.117 4.117 10 C -0.122 4.122 11 C 0.127 3.873 12 H 0.080 0.920 13 C 0.522 3.478 14 O -0.543 6.543 15 N -0.706 5.706 16 C 0.248 3.752 17 C -0.619 4.619 18 H 0.055 0.945 19 C 0.021 3.979 20 N -0.905 5.905 21 Si 1.079 2.921 22 H -0.287 1.287 23 H -0.283 1.283 24 H -0.289 1.289 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.386 0.614 41 H 0.011 0.989 42 H 0.018 0.982 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.754 9.070 -17.301 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.130 4.130 3 C -0.212 4.212 4 C 0.291 3.709 5 O -0.353 6.353 6 N -0.345 5.345 7 C -0.020 4.020 8 C -0.176 4.176 9 C -0.154 4.154 10 C -0.160 4.160 11 C 0.020 3.980 12 H 0.098 0.902 13 C 0.307 3.693 14 O -0.421 6.421 15 N -0.354 5.354 16 C 0.127 3.873 17 C -0.657 4.657 18 H 0.073 0.927 19 C -0.185 4.185 20 N -0.540 5.540 21 Si 0.906 3.094 22 H -0.214 1.214 23 H -0.208 1.208 24 H -0.215 1.215 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.218 0.782 41 H 0.029 0.971 42 H 0.036 0.964 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.882 8.228 -15.767 21.389 hybrid contribution 1.313 0.393 -1.305 1.893 sum 13.195 8.622 -17.072 23.235 Atomic orbital electron populations 1.21610 0.92364 1.03092 1.01958 1.21236 0.98452 0.96899 0.96401 1.22062 1.01695 0.94427 1.02978 1.20792 0.81599 0.79806 0.88712 1.90895 1.54010 1.48246 1.42109 1.47939 1.06075 1.52893 1.27597 1.21990 0.91388 0.95752 0.92823 1.21967 0.99333 0.98143 0.98172 1.21505 0.97375 0.99958 0.96595 1.21807 0.96675 0.97133 1.00422 1.21202 0.95138 0.93142 0.88475 0.90208 1.19629 0.84997 0.82089 0.82612 1.90621 1.45845 1.38343 1.67333 1.46065 1.30905 1.48313 1.10128 1.19040 0.84194 0.93170 0.90914 1.22115 1.15453 1.32490 0.95688 0.92726 1.25850 0.92291 0.94913 1.05422 1.70706 1.33037 1.29716 1.20545 0.83420 0.76323 0.75553 0.74077 1.21359 1.20848 1.21475 0.91679 0.92300 0.91862 0.89074 0.91406 0.91519 0.91832 0.91300 0.88664 0.90704 0.91275 0.91646 0.91338 0.90459 0.90338 0.78180 0.97141 0.96372 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 8.50 37.16 0.32 -1.41 16 2 C -0.11 -1.30 2.43 -91.77 -0.22 -1.53 16 3 C -0.15 -1.38 8.69 37.16 0.32 -1.06 16 4 C 0.50 8.48 6.74 -10.98 -0.07 8.40 16 5 O -0.48 -11.01 11.74 -19.14 -0.22 -11.23 16 6 N -0.61 -8.55 2.97 -166.53 -0.49 -9.05 16 7 C 0.10 0.92 5.04 -3.71 -0.02 0.90 16 8 C -0.14 -1.10 6.08 -26.61 -0.16 -1.26 16 9 C -0.12 -1.05 5.88 -26.69 -0.16 -1.20 16 10 C -0.12 -1.59 5.32 -26.61 -0.14 -1.74 16 11 C 0.13 2.01 3.31 -68.76 -0.23 1.78 16 12 H 0.08 1.10 7.92 -51.93 -0.41 0.68 16 13 C 0.52 11.58 4.39 -10.98 -0.05 11.54 16 14 O -0.54 -14.35 14.59 -19.14 -0.28 -14.63 16 15 N -0.71 -16.74 5.55 -61.47 -0.34 -17.08 16 16 C 0.25 7.18 4.74 -5.19 -0.02 7.15 16 17 C -0.62 -18.18 9.28 -34.44 -0.32 -18.50 16 18 H 0.05 1.52 7.60 -52.49 -0.40 1.12 16 19 C 0.02 0.61 5.46 -17.82 -0.10 0.52 16 20 N -0.91 -28.87 13.65 55.43 0.76 -28.11 16 21 Si 1.08 25.66 29.90 -169.99 -5.08 20.58 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 25 H 0.06 0.96 8.03 -51.93 -0.42 0.54 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.09 0.91 7.67 -51.93 -0.40 0.51 16 29 H 0.07 0.51 5.10 -51.93 -0.26 0.25 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.68 4.42 -51.93 -0.23 0.45 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.20 7.94 -51.93 -0.41 0.79 16 40 H 0.39 8.07 8.16 -40.82 -0.33 7.74 16 41 H 0.01 0.33 8.01 -51.93 -0.42 -0.08 16 42 H 0.02 0.59 8.01 -51.93 -0.42 0.18 16 43 H 0.27 8.91 7.22 -40.82 -0.29 8.62 16 LS Contribution 337.09 15.07 5.08 5.08 Total: -1.00 -38.11 337.09 -8.46 -46.56 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.02 Total: 4.30 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -0.85 Total: 3.59 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.08 Total: -54.25 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.50 Total: -25.86 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.08 Total: 20.58 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -38.11 -8.46 -46.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427633390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.485 kcal (2) G-P(sol) polarization free energy of solvation -38.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds