Wall clock time and date at job start Tue Mar 31 2020 05:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 119.99920 * 2 1 4 4 C 1.50701 * 119.99944 * 179.97438 * 2 1 3 5 5 O 1.42904 * 109.47186 * 0.02562 * 4 2 1 6 6 C 1.42893 * 113.99983 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47223 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.47199 * 64.99906 * 7 6 5 9 9 C 1.34770 * 119.99997 * 179.97438 * 8 7 6 10 10 O 1.21583 * 120.00460 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99918 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99942 * 180.27587 * 11 9 8 13 13 C 1.53005 * 109.46942 * 178.21726 * 12 11 9 14 14 C 1.50697 * 115.54927 * 65.12975 * 13 12 11 15 15 H 1.08000 * 119.99825 * 265.41127 * 14 13 12 16 16 C 1.37870 * 120.00191 * 85.40713 * 14 13 12 17 17 N 1.31511 * 120.00139 * 353.55966 * 16 14 13 18 18 Si 1.86796 * 120.00125 * 173.55888 * 16 14 13 19 19 H 1.48501 * 109.46996 * 90.00080 * 18 16 14 20 20 H 1.48505 * 109.47390 * 209.99972 * 18 16 14 21 21 H 1.48503 * 109.47242 * 330.00261 * 18 16 14 22 22 C 1.53005 * 117.49892 * 279.45811 * 13 12 11 23 23 C 1.52995 * 117.49601 * 210.80112 * 13 12 11 24 24 H 1.07999 * 120.00096 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99935 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46897 * 269.99279 * 3 2 1 27 27 H 1.09004 * 109.47377 * 29.99666 * 3 2 1 28 28 H 1.09006 * 109.46995 * 149.99654 * 3 2 1 29 29 H 1.08998 * 109.47186 * 240.00354 * 4 2 1 30 30 H 1.08993 * 109.46946 * 120.00462 * 4 2 1 31 31 H 1.09005 * 109.47158 * 60.00502 * 6 5 4 32 32 H 1.08995 * 109.47321 * 300.00186 * 6 5 4 33 33 H 1.09009 * 109.47181 * 305.00415 * 7 6 5 34 34 H 1.08997 * 109.47575 * 185.00271 * 7 6 5 35 35 H 0.96999 * 119.99285 * 0.02562 * 8 7 6 36 36 H 0.96998 * 119.99939 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.47336 * 298.21717 * 12 11 9 38 38 H 1.09001 * 109.46683 * 58.22047 * 12 11 9 39 39 H 0.97003 * 120.00760 * 185.06462 * 17 16 14 40 40 H 1.09006 * 117.49485 * 359.97438 * 22 13 12 41 41 H 1.08992 * 117.49885 * 145.01646 * 22 13 12 42 42 H 1.09009 * 117.49505 * 214.98214 * 23 13 12 43 43 H 1.08997 * 117.50195 * 359.97126 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 8 1.1349 -2.3913 0.0005 6 6 1.7494 -3.6813 0.0004 7 6 0.6665 -4.7621 -0.0004 8 7 -0.0910 -4.6936 -1.2525 9 6 -1.1019 -5.5562 -1.4766 10 8 -1.3857 -6.3910 -0.6394 11 7 -1.7984 -5.4935 -2.6288 12 6 -2.9012 -6.4273 -2.8698 13 6 -3.5475 -6.1153 -4.2211 14 6 -2.6705 -6.3340 -5.4269 15 1 -2.1111 -5.5098 -5.8443 16 6 -2.5822 -7.5861 -5.9972 17 7 -3.1604 -8.6151 -5.4172 18 14 -1.6412 -7.8210 -7.5937 19 1 -0.2211 -8.1316 -7.2901 20 1 -2.2402 -8.9426 -8.3609 21 1 -1.7143 -6.5756 -8.3992 22 6 -4.5481 -4.9591 -4.2756 23 6 -5.0422 -6.4046 -4.3728 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 2.2453 1.6197 -1.0277 27 1 1.4744 2.0648 0.5138 28 1 3.0159 1.1747 0.5139 29 1 2.6901 -1.3625 0.8906 30 1 2.6902 -1.3632 -0.8893 31 1 2.3695 -3.7885 0.8905 32 1 2.3696 -3.7883 -0.8895 33 1 -0.0075 -4.6018 0.8412 34 1 1.1324 -5.7434 0.0892 35 1 0.1357 -4.0278 -1.9205 36 1 -1.5718 -4.8278 -3.2968 37 1 -2.5183 -7.4478 -2.8771 38 1 -3.6443 -6.3237 -2.0791 39 1 -3.0373 -9.5073 -5.7775 40 1 -4.7462 -4.4209 -3.3485 41 1 -4.5722 -4.3568 -5.1836 42 1 -5.3913 -6.7527 -5.3451 43 1 -5.5650 -6.8175 -3.5102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430855580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:47 Heat of formation + Delta-G solvation = -41.712448 kcal Electronic energy + Delta-G solvation = -21863.596388 eV Core-core repulsion = 18524.120391 eV Total energy + Delta-G solvation = -3339.475997 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.42159 -38.51623 -36.74239 -35.51780 -34.00377 -33.15291 -31.93968 -29.52210 -27.42433 -26.52550 -25.95318 -24.97345 -22.46754 -21.16026 -20.24894 -19.33643 -18.84443 -17.68215 -16.95024 -16.51265 -16.11854 -15.58694 -15.23642 -14.94839 -14.61298 -14.11609 -13.89561 -13.77242 -13.55932 -13.21652 -13.03384 -12.75138 -12.58308 -12.32836 -11.88961 -11.66795 -11.54084 -11.27844 -11.23384 -10.98321 -10.89896 -10.50611 -10.23032 -10.07770 -9.68399 -9.46765 -9.17620 -8.92854 -8.76319 -8.46382 -8.20940 -7.89753 -6.04784 -4.13202 2.03553 3.25370 3.26985 3.34751 3.36083 3.36908 3.89045 4.37247 4.56156 4.81069 4.85457 4.94431 5.02177 5.06014 5.10701 5.17765 5.22100 5.23464 5.37393 5.41683 5.62643 5.68138 5.85077 5.90702 6.08234 6.39204 6.43637 6.52007 6.53922 6.65417 6.74228 6.83514 6.91168 7.01645 7.13034 7.40128 7.47051 7.52072 7.67401 7.84189 8.37930 8.74378 8.87520 9.28741 9.53184 11.03082 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.003300 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.982462 B = 8482.716528 C = 8554.883001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.151 4.151 3 C -0.113 4.113 4 C 0.098 3.902 5 O -0.380 6.380 6 C 0.051 3.949 7 C 0.145 3.855 8 N -0.750 5.750 9 C 0.698 3.302 10 O -0.606 6.606 11 N -0.720 5.720 12 C 0.182 3.818 13 C 0.028 3.972 14 C -0.499 4.499 15 H 0.059 0.941 16 C 0.074 3.926 17 N -0.874 5.874 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.211 4.211 23 C -0.148 4.148 24 H 0.095 0.905 25 H 0.112 0.888 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.396 0.604 36 H 0.395 0.605 37 H 0.069 0.931 38 H 0.034 0.966 39 H 0.261 0.739 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.985 15.184 9.508 21.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.170 4.170 4 C 0.022 3.978 5 O -0.300 6.300 6 C -0.026 4.026 7 C 0.020 3.980 8 N -0.407 5.407 9 C 0.398 3.602 10 O -0.486 6.486 11 N -0.373 5.373 12 C 0.059 3.941 13 C 0.028 3.972 14 C -0.537 4.537 15 H 0.077 0.923 16 C -0.131 4.131 17 N -0.510 5.510 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.248 4.248 23 C -0.186 4.186 24 H 0.113 0.887 25 H 0.131 0.869 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.229 0.771 36 H 0.229 0.771 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.410 14.206 10.222 20.363 hybrid contribution 1.020 0.302 -1.508 1.845 sum 11.429 14.508 8.714 20.421 Atomic orbital electron populations 1.23787 0.95450 1.02450 0.98533 1.21559 0.95941 0.94159 1.03495 1.20746 0.99981 0.94016 1.02209 1.21215 0.91136 0.85129 1.00298 1.87927 1.33064 1.13500 1.95472 1.22811 0.95605 0.82973 1.01170 1.21083 0.92841 0.96747 0.87291 1.44985 1.36385 1.38240 1.21116 1.16033 0.79601 0.81518 0.83072 1.90863 1.71169 1.39925 1.46672 1.45126 1.35840 1.38622 1.17667 1.20835 0.85911 0.92313 0.95059 1.19038 0.88836 0.96295 0.93078 1.20331 1.27569 0.95115 1.10682 0.92274 1.24982 0.94952 0.96146 0.96972 1.69976 1.42308 0.98779 1.39965 0.86637 0.79868 0.77850 0.83909 1.20724 1.21187 1.19851 1.23018 1.09808 0.91830 1.00135 1.22489 0.99226 0.96041 1.00843 0.88694 0.86933 0.91424 0.91541 0.92018 0.92472 0.92352 0.91723 0.92465 0.91130 0.90343 0.77059 0.77120 0.91259 0.94786 0.92873 0.91625 0.90426 0.89853 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 13.67 29.01 0.40 -1.24 16 2 C -0.15 -1.34 6.05 -101.07 -0.61 -1.95 16 3 C -0.11 -0.73 10.03 36.00 0.36 -0.37 16 4 C 0.10 0.84 6.34 36.01 0.23 1.07 16 5 O -0.38 -4.05 8.68 -35.23 -0.31 -4.35 16 6 C 0.05 0.47 6.07 37.16 0.23 0.70 16 7 C 0.15 1.82 6.06 -4.04 -0.02 1.80 16 8 N -0.75 -11.23 5.51 -65.22 -0.36 -11.59 16 9 C 0.70 13.93 8.57 -86.92 -0.74 13.18 16 10 O -0.61 -14.43 16.34 5.29 0.09 -14.35 16 11 N -0.72 -14.64 5.48 -65.22 -0.36 -15.00 16 12 C 0.18 4.29 5.50 -4.04 -0.02 4.27 16 13 C 0.03 0.68 1.38 -155.66 -0.21 0.46 16 14 C -0.50 -12.99 8.63 -34.44 -0.30 -13.28 16 15 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 16 C 0.07 1.97 5.39 -17.82 -0.10 1.87 16 17 N -0.87 -24.55 12.91 55.43 0.72 -23.83 16 18 Si 0.89 20.69 29.55 -169.99 -5.02 15.66 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 C -0.21 -4.47 9.96 -26.69 -0.27 -4.73 16 23 C -0.15 -3.43 9.42 -26.70 -0.25 -3.68 16 24 H 0.09 0.81 8.04 -52.49 -0.42 0.38 16 25 H 0.11 1.31 6.84 -52.49 -0.36 0.95 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.39 8.06 -51.93 -0.42 -0.02 16 28 H 0.06 0.33 8.12 -51.93 -0.42 -0.09 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.40 5.11 8.49 -40.82 -0.35 4.76 16 36 H 0.40 7.33 8.38 -40.82 -0.34 6.99 16 37 H 0.07 1.87 8.14 -51.93 -0.42 1.45 16 38 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 39 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.08 2.04 8.14 -51.92 -0.42 1.62 16 43 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 366.71 15.07 5.53 5.53 Total: -1.00 -31.22 366.71 -8.38 -39.61 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -7.35 Total: 10.23 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.32 Total: -1.91 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.00 Total: -50.41 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.22 Total: -18.70 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.22 -8.38 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430855580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.107 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds