Wall clock time and date at job start Tue Mar 31 2020 05:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 119.99920 * 2 1 4 4 C 1.50701 * 119.99944 * 179.97438 * 2 1 3 5 5 O 1.42904 * 109.47186 * 0.02562 * 4 2 1 6 6 C 1.42893 * 113.99983 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47223 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.47199 * 64.99906 * 7 6 5 9 9 C 1.34770 * 119.99997 * 179.97438 * 8 7 6 10 10 O 1.21583 * 120.00460 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99918 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99942 * 180.27587 * 11 9 8 13 13 C 1.53005 * 109.46942 * 178.21726 * 12 11 9 14 14 C 1.50697 * 115.54927 * 65.12975 * 13 12 11 15 15 H 1.08000 * 119.99825 * 265.41127 * 14 13 12 16 16 C 1.37870 * 120.00191 * 85.40713 * 14 13 12 17 17 N 1.31511 * 120.00139 * 353.55966 * 16 14 13 18 18 Si 1.86796 * 120.00125 * 173.55888 * 16 14 13 19 19 H 1.48501 * 109.46996 * 90.00080 * 18 16 14 20 20 H 1.48505 * 109.47390 * 209.99972 * 18 16 14 21 21 H 1.48503 * 109.47242 * 330.00261 * 18 16 14 22 22 C 1.53005 * 117.49892 * 279.45811 * 13 12 11 23 23 C 1.52995 * 117.49601 * 210.80112 * 13 12 11 24 24 H 1.07999 * 120.00096 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99935 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46897 * 269.99279 * 3 2 1 27 27 H 1.09004 * 109.47377 * 29.99666 * 3 2 1 28 28 H 1.09006 * 109.46995 * 149.99654 * 3 2 1 29 29 H 1.08998 * 109.47186 * 240.00354 * 4 2 1 30 30 H 1.08993 * 109.46946 * 120.00462 * 4 2 1 31 31 H 1.09005 * 109.47158 * 60.00502 * 6 5 4 32 32 H 1.08995 * 109.47321 * 300.00186 * 6 5 4 33 33 H 1.09009 * 109.47181 * 305.00415 * 7 6 5 34 34 H 1.08997 * 109.47575 * 185.00271 * 7 6 5 35 35 H 0.96999 * 119.99285 * 0.02562 * 8 7 6 36 36 H 0.96998 * 119.99939 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.47336 * 298.21717 * 12 11 9 38 38 H 1.09001 * 109.46683 * 58.22047 * 12 11 9 39 39 H 0.97003 * 120.00760 * 185.06462 * 17 16 14 40 40 H 1.09006 * 117.49485 * 359.97438 * 22 13 12 41 41 H 1.08992 * 117.49885 * 145.01646 * 22 13 12 42 42 H 1.09009 * 117.49505 * 214.98214 * 23 13 12 43 43 H 1.08997 * 117.50195 * 359.97126 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 8 1.1349 -2.3913 0.0005 6 6 1.7494 -3.6813 0.0004 7 6 0.6665 -4.7621 -0.0004 8 7 -0.0910 -4.6936 -1.2525 9 6 -1.1019 -5.5562 -1.4766 10 8 -1.3857 -6.3910 -0.6394 11 7 -1.7984 -5.4935 -2.6288 12 6 -2.9012 -6.4273 -2.8698 13 6 -3.5475 -6.1153 -4.2211 14 6 -2.6705 -6.3340 -5.4269 15 1 -2.1111 -5.5098 -5.8443 16 6 -2.5822 -7.5861 -5.9972 17 7 -3.1604 -8.6151 -5.4172 18 14 -1.6412 -7.8210 -7.5937 19 1 -0.2211 -8.1316 -7.2901 20 1 -2.2402 -8.9426 -8.3609 21 1 -1.7143 -6.5756 -8.3992 22 6 -4.5481 -4.9591 -4.2756 23 6 -5.0422 -6.4046 -4.3728 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 2.2453 1.6197 -1.0277 27 1 1.4744 2.0648 0.5138 28 1 3.0159 1.1747 0.5139 29 1 2.6901 -1.3625 0.8906 30 1 2.6902 -1.3632 -0.8893 31 1 2.3695 -3.7885 0.8905 32 1 2.3696 -3.7883 -0.8895 33 1 -0.0075 -4.6018 0.8412 34 1 1.1324 -5.7434 0.0892 35 1 0.1357 -4.0278 -1.9205 36 1 -1.5718 -4.8278 -3.2968 37 1 -2.5183 -7.4478 -2.8771 38 1 -3.6443 -6.3237 -2.0791 39 1 -3.0373 -9.5073 -5.7775 40 1 -4.7462 -4.4209 -3.3485 41 1 -4.5722 -4.3568 -5.1836 42 1 -5.3913 -6.7527 -5.3451 43 1 -5.5650 -6.8175 -3.5102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430855580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:46 Heat of formation + Delta-G solvation = -62.460782 kcal Electronic energy + Delta-G solvation = -21864.496103 eV Core-core repulsion = 18524.120391 eV Total energy + Delta-G solvation = -3340.375712 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.93694 -39.36280 -38.52351 -36.40030 -35.15670 -34.86756 -33.94955 -30.59036 -28.09742 -27.87900 -27.19965 -26.68668 -23.47829 -22.93798 -21.80203 -21.22031 -19.56114 -19.20819 -18.12902 -17.68937 -17.36071 -16.69905 -16.57106 -16.33346 -16.27432 -15.72152 -15.23441 -15.00908 -14.69675 -14.40057 -14.13889 -13.93405 -13.65755 -13.51105 -13.37515 -13.02483 -12.90095 -12.82437 -12.55644 -12.33239 -12.05021 -12.03298 -11.90845 -11.51544 -11.28662 -10.83798 -10.74081 -10.45009 -10.27013 -10.03029 -9.83842 -9.55509 -8.07990 -6.21336 1.34732 1.43039 1.45604 1.54268 1.87783 2.26745 2.43861 2.61925 3.19939 3.36733 3.65451 3.86331 4.07200 4.22453 4.26634 4.28969 4.44594 4.49541 4.55036 4.57552 4.66302 4.67561 4.74276 4.76583 4.86876 4.89350 5.00491 5.05483 5.14273 5.18414 5.28289 5.55595 5.60365 5.62847 5.72362 5.73647 5.80346 5.87019 6.17281 6.34176 6.38688 6.85466 7.25715 7.47900 7.70889 8.99685 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.003300 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.982462 B = 8482.716528 C = 8554.883001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.147 4.147 3 C -0.112 4.112 4 C 0.092 3.908 5 O -0.403 6.403 6 C 0.060 3.940 7 C 0.140 3.860 8 N -0.730 5.730 9 C 0.694 3.306 10 O -0.648 6.648 11 N -0.716 5.716 12 C 0.200 3.800 13 C 0.007 3.993 14 C -0.504 4.504 15 H 0.064 0.936 16 C 0.024 3.976 17 N -0.909 5.909 18 Si 0.952 3.048 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.263 1.263 22 C -0.177 4.177 23 C -0.158 4.158 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.409 0.591 36 H 0.406 0.594 37 H 0.026 0.974 38 H 0.030 0.970 39 H 0.259 0.741 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.879 17.349 9.218 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.147 4.147 3 C -0.169 4.169 4 C 0.016 3.984 5 O -0.324 6.324 6 C -0.016 4.016 7 C 0.016 3.984 8 N -0.387 5.387 9 C 0.394 3.606 10 O -0.531 6.531 11 N -0.369 5.369 12 C 0.075 3.925 13 C 0.006 3.994 14 C -0.542 4.542 15 H 0.082 0.918 16 C -0.177 4.177 17 N -0.546 5.546 18 Si 0.778 3.222 19 H -0.206 1.206 20 H -0.216 1.216 21 H -0.187 1.187 22 C -0.214 4.214 23 C -0.197 4.197 24 H 0.121 0.879 25 H 0.108 0.892 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.245 0.755 36 H 0.241 0.759 37 H 0.045 0.955 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.345 16.437 9.921 22.826 hybrid contribution 0.464 -0.328 -1.358 1.472 sum 12.809 16.109 8.562 22.291 Atomic orbital electron populations 1.23726 0.96119 1.01835 1.01011 1.21920 0.95829 0.95505 1.01439 1.20789 1.00382 0.92743 1.02938 1.21420 0.90980 0.84203 1.01785 1.87907 1.34405 1.14301 1.95738 1.22765 0.94181 0.81474 1.03203 1.21278 0.93220 0.98455 0.85437 1.44887 1.34716 1.36927 1.22193 1.16224 0.80276 0.81747 0.82363 1.90832 1.72516 1.41881 1.47912 1.44911 1.35427 1.38311 1.18265 1.20391 0.86436 0.90771 0.94931 1.19052 0.89018 0.98815 0.92528 1.20649 1.27403 0.95104 1.11038 0.91820 1.25721 0.96072 0.96076 0.99827 1.70108 1.43981 0.99015 1.41496 0.85658 0.78434 0.77821 0.80321 1.20558 1.21585 1.18747 1.23000 1.06228 0.90677 1.01500 1.22435 0.98972 0.98144 1.00112 0.87868 0.89212 0.90712 0.91122 0.90556 0.90709 0.90923 0.89093 0.90868 0.92591 0.90284 0.75547 0.75920 0.95548 0.95164 0.93226 0.89526 0.89485 0.91667 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.63 13.67 67.78 0.93 -2.71 16 2 C -0.15 -2.32 6.05 -16.49 -0.10 -2.42 16 3 C -0.11 -1.16 10.03 71.23 0.71 -0.45 16 4 C 0.09 1.32 6.34 71.24 0.45 1.77 16 5 O -0.40 -7.80 8.68 -148.98 -1.29 -9.09 16 6 C 0.06 0.95 6.07 71.98 0.44 1.39 16 7 C 0.14 3.36 6.06 86.38 0.52 3.89 16 8 N -0.73 -21.18 5.51 -478.53 -2.64 -23.81 16 9 C 0.69 27.71 8.57 179.05 1.53 29.25 16 10 O -0.65 -31.47 16.34 -3.98 -0.06 -31.53 16 11 N -0.72 -29.00 5.48 -478.53 -2.62 -31.62 16 12 C 0.20 9.56 5.50 86.38 0.48 10.03 16 13 C 0.01 0.32 1.38 -52.93 -0.07 0.25 16 14 C -0.50 -26.01 8.63 25.60 0.22 -25.79 16 15 H 0.06 3.16 7.82 -2.91 -0.02 3.13 16 16 C 0.02 1.27 5.39 84.65 0.46 1.72 16 17 N -0.91 -52.02 12.91 21.44 0.28 -51.74 16 18 Si 0.95 42.39 29.55 68.60 2.03 44.41 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 C -0.18 -7.20 9.96 30.62 0.30 -6.89 16 23 C -0.16 -7.35 9.42 30.62 0.29 -7.07 16 24 H 0.10 1.70 8.04 -2.91 -0.02 1.68 16 25 H 0.09 2.11 6.84 -2.91 -0.02 2.09 16 26 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.07 0.68 8.06 -2.38 -0.02 0.67 16 28 H 0.08 0.58 8.12 -2.38 -0.02 0.56 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.52 8.14 -2.38 -0.02 1.51 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.41 9.86 8.49 -92.71 -0.79 9.08 16 36 H 0.41 14.62 8.38 -92.71 -0.78 13.84 16 37 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.03 1.44 8.09 -2.39 -0.02 1.43 16 39 H 0.26 14.29 8.32 -92.71 -0.77 13.52 16 40 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 41 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 42 H 0.06 3.24 8.14 -2.38 -0.02 3.22 16 43 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -68.09 366.71 1.28 -66.81 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: -0.57 Total: 33.61 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 6.16 Total: 2.97 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -4.98 Total: -107.17 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -1.36 Total: -40.63 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -68.09 1.28 -66.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430855580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.351 kcal (2) G-P(sol) polarization free energy of solvation -68.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds